Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 S 1.81401 * 109.46977 * 119.99882 * 2 1 3 5 5 C 1.81400 * 102.99708 * 174.99881 * 4 2 1 6 6 C 1.50689 * 109.47181 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00343 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00617 * 180.02562 * 6 5 4 9 9 C 1.46926 * 120.62464 * 353.80015 * 8 6 5 10 10 C 1.53197 * 108.77421 * 126.41386 * 9 8 6 11 11 C 1.53043 * 109.30965 * 54.63431 * 10 9 8 12 12 C 1.53033 * 109.54178 * 298.63542 * 11 10 9 13 13 C 1.46920 * 120.63668 * 173.82817 * 8 6 5 14 14 H 1.08994 * 109.59174 * 113.79877 * 13 8 6 15 15 C 1.53003 * 109.58590 * 353.37094 * 13 8 6 16 16 H 1.08996 * 110.64052 * 57.12234 * 15 13 8 17 17 C 1.55155 * 110.71951 * 180.45855 * 15 13 8 18 18 C 1.54912 * 101.58203 * 153.86796 * 17 15 13 19 19 N 1.47425 * 104.82832 * 322.98999 * 18 17 15 20 20 C 1.36937 * 125.64543 * 204.09305 * 19 18 17 21 21 H 1.08000 * 119.99826 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00346 * 0.03916 * 20 19 18 23 23 N 1.31619 * 119.99739 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00151 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46997 * 60.00356 * 24 22 20 26 26 H 1.48501 * 109.46924 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47375 * 300.00223 * 24 22 20 28 28 C 1.47019 * 108.70496 * 24.12646 * 19 18 17 29 29 H 1.09005 * 109.46795 * 300.00376 * 1 2 3 30 30 H 1.08996 * 109.47110 * 59.99695 * 1 2 3 31 31 H 1.08994 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46627 * 240.00074 * 2 1 3 33 33 H 1.09000 * 109.47327 * 59.99692 * 3 2 1 34 34 H 1.08997 * 109.47206 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46918 * 300.00207 * 3 2 1 36 36 H 1.09000 * 109.47283 * 59.99847 * 5 4 2 37 37 H 1.09005 * 109.47029 * 299.99927 * 5 4 2 38 38 H 1.09004 * 109.59024 * 6.63187 * 9 8 6 39 39 H 1.08993 * 109.70946 * 246.27350 * 9 8 6 40 40 H 1.09002 * 109.49944 * 294.69040 * 10 9 8 41 41 H 1.08998 * 109.50010 * 174.58899 * 10 9 8 42 42 H 1.09000 * 109.45907 * 178.61508 * 11 10 9 43 43 H 1.08995 * 109.45781 * 58.66198 * 11 10 9 44 44 H 1.08992 * 109.50163 * 181.31585 * 12 11 10 45 45 H 1.09005 * 109.49682 * 301.41581 * 12 11 10 46 46 H 1.09001 * 111.00250 * 271.94031 * 17 15 13 47 47 H 1.09001 * 111.00807 * 35.79192 * 17 15 13 48 48 H 1.08998 * 110.36631 * 204.15537 * 18 17 15 49 49 H 1.08996 * 110.46219 * 81.87199 * 18 17 15 50 50 H 0.96994 * 119.99819 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.88459 * 239.52097 * 28 19 18 52 52 H 1.09009 * 110.00694 * 118.43303 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.9308 -0.8874 1.2290 6 6 4.5894 -1.5784 2.3950 7 8 3.9138 -2.0065 3.3067 8 7 5.9294 -1.7199 2.4253 9 6 6.7497 -1.3288 1.2708 10 6 7.8389 -0.3614 1.7449 11 6 8.6275 -1.0074 2.8863 12 6 7.6886 -1.2907 4.0611 13 6 6.5976 -2.2686 3.6132 14 1 7.0475 -3.2305 3.3677 15 6 5.5768 -2.4487 4.7386 16 1 4.7585 -3.0923 4.4157 17 6 6.2578 -3.0170 6.0116 18 6 5.3198 -2.4918 7.1269 19 7 4.9148 -1.1475 6.6773 20 6 4.4902 -0.1290 7.4882 21 1 4.2142 0.8231 7.0597 22 6 4.4149 -0.3202 8.8610 23 7 4.7520 -1.4803 9.3834 24 14 3.8364 1.0694 9.9673 25 1 2.4575 1.4658 9.5841 26 1 3.8463 0.6138 11.3806 27 1 4.7460 2.2335 9.8166 28 6 5.0414 -1.0817 5.2140 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 4.3054 0.1333 1.1522 37 1 4.1590 -1.4282 0.3105 38 1 6.1228 -0.8369 0.5269 39 1 7.2120 -2.2129 0.8320 40 1 7.3777 0.5610 2.0979 41 1 8.5127 -0.1385 0.9176 42 1 9.4190 -0.3310 3.2091 43 1 9.0680 -1.9422 2.5398 44 1 8.2553 -1.7293 4.8823 45 1 7.2288 -0.3595 4.3921 46 1 6.2717 -4.1068 5.9938 47 1 7.2651 -2.6169 6.1276 48 1 5.8548 -2.4297 8.0745 49 1 4.4472 -3.1374 7.2263 50 1 4.6998 -1.6138 10.3426 51 1 5.7411 -0.2929 4.9375 52 1 4.0678 -0.8879 4.7638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754538019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -6.262865 kcal Electronic energy + Delta-G solvation = -29556.344461 eV Core-core repulsion = 25875.863495 eV Total energy + Delta-G solvation = -3680.480966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.91234 -38.88719 -38.17006 -35.64303 -35.02213 -33.88304 -32.72808 -30.97871 -30.49477 -28.65898 -28.04355 -26.83004 -25.50849 -24.29084 -22.88180 -22.13412 -21.94809 -21.14145 -19.60683 -18.94936 -17.69943 -17.52094 -17.02636 -16.81258 -16.57700 -16.37319 -15.76324 -15.70840 -15.30791 -15.24334 -14.77423 -14.69198 -14.59570 -14.37162 -14.12399 -13.96759 -13.56931 -13.50974 -13.27353 -13.13400 -13.05342 -12.87815 -12.70504 -12.41139 -12.27970 -12.21055 -12.08518 -12.06424 -12.03899 -11.89828 -11.63338 -11.55536 -11.48514 -11.34667 -11.12703 -10.72010 -10.58049 -9.95664 -9.48652 -8.77392 -8.66581 -7.75947 -5.19223 0.53253 1.40771 1.46094 1.52443 1.62510 1.64564 2.06704 2.49425 3.30625 3.43715 3.74841 3.85014 3.87635 3.91736 3.95748 3.99622 4.05364 4.08325 4.17774 4.19924 4.31884 4.32374 4.35451 4.40116 4.60362 4.67769 4.72127 4.76488 4.78056 4.79056 4.85333 4.87439 4.94701 4.99427 5.06464 5.12012 5.18499 5.24798 5.25280 5.26954 5.29528 5.32860 5.42017 5.53926 5.61942 5.65610 5.77424 5.85477 6.31389 6.47232 7.12265 7.28331 7.82084 8.48700 9.25930 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.004151 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.346813 B = 6743.772947 C = 8735.918635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.147 4.147 4 S -0.273 6.273 5 C -0.101 4.101 6 C 0.506 3.494 7 O -0.536 6.536 8 N -0.604 5.604 9 C 0.102 3.898 10 C -0.132 4.132 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.170 3.830 14 H 0.092 0.908 15 C -0.084 4.084 16 H 0.087 0.913 17 C -0.133 4.133 18 C 0.159 3.841 19 N -0.626 5.626 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.069 4.069 23 N -0.950 5.950 24 Si 0.981 3.019 25 H -0.283 1.283 26 H -0.288 1.288 27 H -0.273 1.273 28 C 0.151 3.849 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.073 0.927 49 H -0.032 1.032 50 H 0.247 0.753 51 H 0.016 0.984 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 2.056 -28.231 28.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.189 4.189 3 C -0.205 4.205 4 S -0.047 6.047 5 C -0.252 4.252 6 C 0.294 3.706 7 O -0.413 6.413 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.170 4.170 11 C -0.150 4.150 12 C -0.173 4.173 13 C 0.067 3.933 14 H 0.110 0.890 15 C -0.103 4.103 16 H 0.105 0.895 17 C -0.172 4.172 18 C 0.034 3.966 19 N -0.352 5.352 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.809 3.191 25 H -0.209 1.209 26 H -0.214 1.214 27 H -0.199 1.199 28 C 0.027 3.973 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.090 0.910 49 H -0.014 1.014 50 H 0.056 0.944 51 H 0.034 0.966 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.604 1.474 -26.722 27.156 hybrid contribution -0.054 1.015 0.491 1.129 sum 4.551 2.489 -26.232 26.740 Atomic orbital electron populations 1.21603 0.91480 1.02807 1.03179 1.23276 1.00062 0.98878 0.96643 1.22090 1.01414 0.93880 1.03155 1.88201 1.04803 1.77772 1.33919 1.23468 0.94737 1.05725 1.01263 1.20243 0.82782 0.80346 0.87231 1.90800 1.64398 1.48666 1.37467 1.48089 1.05005 1.63605 1.17125 1.22099 0.93347 0.99804 0.86654 1.21931 0.97779 0.97978 0.99305 1.21506 0.97223 1.01911 0.94393 1.22084 0.96716 0.99203 0.99322 1.21103 0.91831 0.96877 0.83507 0.88984 1.22508 0.97139 0.97110 0.93523 0.89476 1.23073 0.98813 0.99856 0.95488 1.21624 0.93626 0.84017 0.97305 1.44874 1.77377 1.10682 1.02254 1.19368 1.36225 0.92227 0.88926 0.91243 1.25643 1.02777 0.99852 0.97838 1.70071 1.55576 1.23896 1.10507 0.85116 0.78121 0.78376 0.77519 1.20922 1.21350 1.19891 1.21792 0.96744 0.95684 0.83106 0.93113 0.88563 0.92245 0.87654 0.93003 0.91996 0.89590 0.85890 0.84381 0.87725 0.88825 0.92998 0.87606 0.91266 0.90031 0.91164 0.93483 0.90577 0.90981 0.90953 1.01360 0.94371 0.96645 0.96391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.20 71.98 0.66 -1.41 16 2 C -0.06 -0.98 3.38 30.60 0.10 -0.88 16 3 C -0.15 -2.04 9.10 71.98 0.66 -1.38 16 4 S -0.27 -7.43 20.29 -56.49 -1.15 -8.58 16 5 C -0.10 -2.10 4.48 71.23 0.32 -1.78 16 6 C 0.51 14.96 6.98 87.65 0.61 15.57 16 7 O -0.54 -22.06 9.27 -3.04 -0.03 -22.09 16 8 N -0.60 -14.42 2.95 -795.03 -2.34 -16.77 16 9 C 0.10 1.31 6.35 86.36 0.55 1.86 16 10 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 11 C -0.11 -1.90 5.88 30.62 0.18 -1.72 16 12 C -0.14 -3.62 4.77 30.67 0.15 -3.47 16 13 C 0.17 4.83 2.79 44.98 0.13 4.95 16 14 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.08 -3.38 2.09 -9.61 -0.02 -3.40 16 16 H 0.09 3.96 5.87 -8.95 -0.05 3.90 16 17 C -0.13 -5.64 6.43 31.99 0.21 -5.43 16 18 C 0.16 9.01 5.89 86.86 0.51 9.52 16 19 N -0.63 -37.14 3.39 -691.99 -2.35 -39.49 16 20 C -0.24 -15.02 10.27 84.03 0.86 -14.16 16 21 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 22 C -0.07 -4.28 5.49 84.86 0.47 -3.81 16 23 N -0.95 -61.30 10.09 21.65 0.22 -61.08 16 24 Si 0.98 49.40 29.55 68.60 2.03 51.43 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 28 C 0.15 7.48 5.46 86.73 0.47 7.95 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.76 6.92 -2.39 -0.02 0.75 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.12 2.07 6.94 -2.39 -0.02 2.05 16 37 H 0.14 1.82 7.69 -2.39 -0.02 1.80 16 38 H 0.10 0.82 5.93 -2.39 -0.01 0.81 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.98 6.44 -2.39 -0.02 1.96 16 45 H 0.05 1.59 5.65 -2.38 -0.01 1.58 16 46 H 0.08 2.83 8.14 -2.39 -0.02 2.82 16 47 H 0.07 2.83 6.04 -2.39 -0.01 2.82 16 48 H 0.07 4.49 5.87 -2.39 -0.01 4.48 16 49 H -0.03 -1.97 8.14 -2.39 -0.02 -1.99 16 50 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 51 H 0.02 0.77 5.33 -2.38 -0.01 0.76 16 52 H 0.02 1.01 5.74 -2.38 -0.01 1.00 16 Total: -1.00 -83.99 390.04 3.27 -80.72 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.85 Total: 14.99 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 6.04 Total: 0.86 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -4.47 Total: -117.33 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.03 Total: -22.09 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.15 Total: -8.58 kcal Total: -83.99 3.27 -80.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754538019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.461 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds