Wall clock time and date at job start Sat Apr 11 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47435 * 2 1 4 4 S 1.81400 * 109.47077 * 120.00212 * 2 1 3 5 5 C 1.81405 * 103.00017 * 174.99597 * 4 2 1 6 6 C 1.50698 * 109.46943 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00225 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99793 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.63102 * 6.05244 * 8 6 5 10 10 C 1.53191 * 108.77615 * 233.60554 * 9 8 6 11 11 C 1.53038 * 109.31298 * 305.36718 * 10 9 8 12 12 C 1.53044 * 109.53881 * 61.36263 * 11 10 9 13 13 C 1.46922 * 120.63013 * 186.05030 * 8 6 5 14 14 H 1.09007 * 109.70422 * 246.25058 * 13 8 6 15 15 C 1.53004 * 109.58996 * 6.60520 * 13 8 6 16 16 H 1.09002 * 110.88128 * 304.49349 * 15 13 8 17 17 C 1.55153 * 111.00392 * 180.61047 * 15 13 8 18 18 C 1.54327 * 103.09846 * 206.33279 * 17 15 13 19 19 N 1.47493 * 107.03415 * 22.24462 * 18 17 15 20 20 C 1.36932 * 125.59107 * 181.00457 * 19 18 17 21 21 H 1.07996 * 119.99931 * 185.03331 * 20 19 18 22 22 C 1.38821 * 120.00235 * 5.02994 * 20 19 18 23 23 N 1.31622 * 119.99465 * 354.91025 * 22 20 19 24 24 Si 1.86791 * 120.00300 * 174.90774 * 22 20 19 25 25 H 1.48500 * 109.47375 * 94.99741 * 24 22 20 26 26 H 1.48499 * 109.47423 * 215.00292 * 24 22 20 27 27 H 1.48501 * 109.47279 * 335.00290 * 24 22 20 28 28 C 1.47422 * 108.75874 * 1.02221 * 19 18 17 29 29 H 1.08993 * 109.46630 * 299.99830 * 1 2 3 30 30 H 1.09001 * 109.46668 * 59.99701 * 1 2 3 31 31 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47088 * 239.99890 * 2 1 3 33 33 H 1.09002 * 109.47204 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46916 * 299.99888 * 3 2 1 35 35 H 1.09003 * 109.47072 * 59.99880 * 3 2 1 36 36 H 1.09001 * 109.46714 * 60.00231 * 5 4 2 37 37 H 1.08994 * 109.47321 * 300.00389 * 5 4 2 38 38 H 1.09004 * 109.58920 * 113.81984 * 9 8 6 39 39 H 1.09001 * 109.58436 * 353.39562 * 9 8 6 40 40 H 1.08994 * 109.49757 * 185.41030 * 10 9 8 41 41 H 1.09007 * 109.49670 * 65.31295 * 10 9 8 42 42 H 1.09004 * 109.46074 * 301.33958 * 11 10 9 43 43 H 1.08996 * 109.45958 * 181.38549 * 11 10 9 44 44 H 1.09007 * 109.49501 * 178.68476 * 12 11 10 45 45 H 1.08993 * 109.49674 * 58.59041 * 12 11 10 46 46 H 1.08994 * 110.72347 * 324.78420 * 17 15 13 47 47 H 1.09003 * 110.71932 * 87.88564 * 17 15 13 48 48 H 1.08998 * 109.88253 * 141.70017 * 18 17 15 49 49 H 1.08997 * 109.88575 * 262.86573 * 18 17 15 50 50 H 0.96996 * 119.99641 * 180.02562 * 23 22 20 51 51 H 1.09000 * 110.36445 * 217.05781 * 28 19 18 52 52 H 1.08995 * 110.45720 * 94.77869 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 3.9308 -0.8876 1.2289 6 6 4.5895 -1.5776 2.3956 7 8 3.9138 -2.0058 3.3071 8 7 5.9294 -1.7198 2.4254 9 6 6.7718 -1.0937 1.3972 10 6 7.6693 -2.1674 0.7741 11 6 8.4519 -2.8777 1.8809 12 6 7.4752 -3.5617 2.8402 13 6 6.5755 -2.5038 3.4868 14 1 7.1773 -1.8466 4.1146 15 6 5.5072 -3.1909 4.3397 16 1 4.7993 -2.4631 4.7364 17 6 6.1544 -4.0172 5.4823 18 6 5.1011 -5.1094 5.7640 19 7 4.2723 -5.2336 4.5503 20 6 3.2092 -6.0826 4.3947 21 1 2.7143 -6.1584 3.4378 22 6 2.7675 -6.8457 5.4669 23 7 3.4307 -6.8293 6.6037 24 14 1.2321 -7.8958 5.2964 25 1 1.6184 -9.2812 4.9267 26 1 0.4990 -7.9141 6.5877 27 1 0.3582 -7.3269 4.2391 28 6 4.7774 -4.2938 3.5330 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 4.3054 0.1332 1.1523 37 1 4.1591 -1.4282 0.3104 38 1 7.3900 -0.3200 1.8526 39 1 6.1400 -0.6527 0.6261 40 1 8.3660 -1.7002 0.0781 41 1 7.0534 -2.8922 0.2415 42 1 9.0487 -2.1486 2.4289 43 1 9.1096 -3.6256 1.4379 44 1 8.0339 -4.0869 3.6150 45 1 6.8612 -4.2733 2.2882 46 1 7.0929 -4.4625 5.1524 47 1 6.3125 -3.3972 6.3648 48 1 5.5969 -6.0567 5.9761 49 1 4.4801 -4.8161 6.6104 50 1 3.1224 -7.3628 7.3528 51 1 3.9496 -3.8655 2.9679 52 1 5.4738 -4.7967 2.8622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754538020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:56 Heat of formation + Delta-G solvation = 13.292102 kcal Electronic energy + Delta-G solvation = -29515.934751 eV Core-core repulsion = 25836.301753 eV Total energy + Delta-G solvation = -3679.632999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.69003 -37.44982 -36.75458 -34.95108 -33.24861 -32.76572 -31.06130 -29.75895 -28.83571 -27.44650 -26.94153 -25.09654 -24.22468 -22.98247 -22.09547 -21.06714 -20.12007 -19.63758 -18.48507 -16.99303 -16.62669 -16.31341 -15.73796 -15.55250 -15.07588 -14.91554 -14.52366 -14.50388 -14.35364 -14.00269 -13.72078 -13.54717 -13.48768 -13.26036 -12.91091 -12.71181 -12.51662 -12.15116 -11.97721 -11.69852 -11.61284 -11.51989 -11.49855 -11.38208 -11.18795 -11.03145 -10.79400 -10.77172 -10.62353 -10.41064 -9.94900 -9.87823 -9.71455 -9.70937 -9.55851 -9.42758 -8.62825 -8.35409 -8.30177 -7.61273 -6.51974 -5.49851 -2.79027 1.43585 2.49156 2.74205 3.06897 3.53200 3.58517 3.61764 4.40084 4.53952 4.60093 4.64197 4.70021 4.74186 4.85735 4.88862 5.00606 5.04580 5.09005 5.24197 5.26220 5.31549 5.40713 5.41439 5.51066 5.53377 5.58590 5.65172 5.72486 5.80910 5.83091 5.85062 5.85922 5.93514 5.94232 6.03584 6.12295 6.21724 6.39111 6.45118 6.57484 6.75542 6.83704 6.97433 7.15028 7.43497 7.52870 7.77032 7.88263 8.04227 8.40385 8.50170 9.45572 10.07599 10.76391 11.62738 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008430 B = 0.004500 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.733970 B = 6220.713041 C = 8899.479745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.147 4.147 4 S -0.168 6.168 5 C -0.128 4.128 6 C 0.518 3.482 7 O -0.473 6.473 8 N -0.607 5.607 9 C 0.109 3.891 10 C -0.135 4.135 11 C -0.119 4.119 12 C -0.141 4.141 13 C 0.164 3.836 14 H 0.067 0.933 15 C -0.106 4.106 16 H 0.115 0.885 17 C -0.148 4.148 18 C 0.182 3.818 19 N -0.603 5.603 20 C -0.213 4.213 21 H 0.074 0.926 22 C -0.013 4.013 23 N -0.925 5.925 24 Si 0.905 3.095 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.145 3.855 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.034 0.966 49 H 0.045 0.955 50 H 0.248 0.752 51 H 0.053 0.947 52 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 18.323 -15.954 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.215 4.215 3 C -0.205 4.205 4 S 0.058 5.942 5 C -0.279 4.279 6 C 0.303 3.697 7 O -0.346 6.346 8 N -0.343 5.343 9 C -0.015 4.015 10 C -0.174 4.174 11 C -0.156 4.156 12 C -0.179 4.179 13 C 0.061 3.939 14 H 0.085 0.915 15 C -0.125 4.125 16 H 0.133 0.867 17 C -0.187 4.187 18 C 0.057 3.943 19 N -0.328 5.328 20 C -0.342 4.342 21 H 0.091 0.909 22 C -0.208 4.208 23 N -0.574 5.574 24 Si 0.737 3.263 25 H -0.220 1.220 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.019 3.981 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.064 0.936 50 H 0.059 0.941 51 H 0.071 0.929 52 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 6.527 17.528 -14.472 23.649 hybrid contribution 0.202 -0.139 -1.250 1.274 sum 6.729 17.389 -15.722 24.389 Atomic orbital electron populations 1.21554 0.91671 1.03225 1.02535 1.23253 1.00198 0.98673 0.99406 1.22098 1.00789 0.94833 1.02828 1.87887 1.01174 1.76217 1.28874 1.23614 0.97749 1.04495 1.02079 1.19593 0.82186 0.80582 0.87305 1.90864 1.62917 1.45389 1.35429 1.47982 1.05108 1.52694 1.28525 1.21704 0.93797 0.95292 0.90667 1.21923 0.98751 0.98495 0.98207 1.21525 0.97775 0.99596 0.96724 1.22190 0.97652 0.98519 0.99506 1.21238 0.94130 0.91444 0.87042 0.91487 1.23011 0.95619 0.98197 0.95638 0.86693 1.23075 0.99227 0.98898 0.97509 1.21132 0.89568 0.93635 0.89928 1.44529 1.33940 1.43120 1.11249 1.19052 1.04677 1.14592 0.95867 0.90851 1.24761 0.99233 1.00848 0.95960 1.69980 1.39891 1.44531 1.02958 0.86172 0.83376 0.79999 0.76782 1.21998 1.21804 1.20712 1.21930 0.95615 0.88715 0.91840 0.91609 0.91375 0.91434 0.89789 0.92845 0.92036 0.91268 0.87980 0.87885 0.91388 0.90324 0.91059 0.91361 0.92103 0.91831 0.90369 0.90060 0.92931 0.92797 0.94779 0.93637 0.94123 0.92928 0.97592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.09 -0.80 3.38 -26.73 -0.09 -0.89 16 3 C -0.15 -1.09 9.10 37.16 0.34 -0.75 16 4 S -0.17 -2.31 20.29 -107.50 -2.18 -4.49 16 5 C -0.13 -1.46 4.48 36.00 0.16 -1.30 16 6 C 0.52 7.80 6.89 -10.98 -0.08 7.73 16 7 O -0.47 -9.48 9.52 5.56 0.05 -9.42 16 8 N -0.61 -7.78 2.96 -165.22 -0.49 -8.26 16 9 C 0.11 0.92 6.35 -3.71 -0.02 0.90 16 10 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 11 C -0.12 -1.14 5.88 -26.69 -0.16 -1.29 16 12 C -0.14 -1.86 4.72 -26.61 -0.13 -1.99 16 13 C 0.16 2.39 2.80 -67.60 -0.19 2.20 16 14 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 15 C -0.11 -2.07 2.13 -88.47 -0.19 -2.25 16 16 H 0.12 2.57 5.74 -52.87 -0.30 2.26 16 17 C -0.15 -3.02 6.31 -24.90 -0.16 -3.18 16 18 C 0.18 4.84 5.40 -2.80 -0.02 4.83 16 19 N -0.60 -16.98 3.41 -169.70 -0.58 -17.55 16 20 C -0.21 -6.50 10.27 -15.06 -0.15 -6.66 16 21 H 0.07 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.39 5.48 -17.43 -0.10 -0.49 16 23 N -0.92 -29.09 10.34 55.49 0.57 -28.52 16 24 Si 0.91 23.76 29.56 -169.99 -5.02 18.74 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.14 3.36 5.68 -2.53 -0.01 3.34 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.05 0.36 6.92 -51.93 -0.36 0.00 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.89 6.70 -51.92 -0.35 0.54 16 37 H 0.10 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.51 5.93 -51.93 -0.31 0.21 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 1.06 6.48 -51.93 -0.34 0.72 16 45 H 0.08 1.27 5.68 -51.93 -0.29 0.97 16 46 H 0.05 0.97 6.10 -51.93 -0.32 0.65 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.03 0.98 7.65 -51.93 -0.40 0.58 16 49 H 0.05 1.35 7.26 -51.93 -0.38 0.97 16 50 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 51 H 0.05 1.31 5.64 -51.93 -0.29 1.02 16 52 H 0.01 0.15 5.38 -51.93 -0.28 -0.13 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -35.52 390.94 -11.43 -46.95 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -9.07 Total: -1.44 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.61 Total: -1.88 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.49 Total: -54.34 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.05 Total: -9.42 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.02 Total: 18.74 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.18 Total: -4.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.52 -11.43 -46.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754538020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.238 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds