Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47148 * 2 1 4 4 S 1.81400 * 109.47011 * 119.99765 * 2 1 3 5 5 C 1.81401 * 102.99986 * 65.00320 * 4 2 1 6 6 C 1.50692 * 109.47340 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00132 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.46932 * 120.63294 * 355.38628 * 8 6 5 10 10 C 1.53186 * 108.77691 * 233.63289 * 9 8 6 11 11 C 1.53039 * 109.31319 * 305.36236 * 10 9 8 12 12 C 1.53033 * 109.53688 * 61.36766 * 11 10 9 13 13 C 1.46927 * 120.63149 * 175.41114 * 8 6 5 14 14 H 1.09001 * 109.58812 * 246.29916 * 13 8 6 15 15 C 1.52997 * 109.58800 * 6.58441 * 13 8 6 16 16 H 1.09002 * 110.63738 * 309.04770 * 15 13 8 17 17 C 1.55155 * 110.72317 * 72.18596 * 15 13 8 18 18 C 1.55118 * 101.48823 * 153.73671 * 17 15 13 19 19 N 1.47424 * 104.94017 * 323.22495 * 18 17 15 20 20 C 1.36942 * 125.64942 * 204.03811 * 19 18 17 21 21 H 1.07997 * 120.00655 * 179.97438 * 20 19 18 22 22 C 1.38820 * 119.99745 * 359.95874 * 20 19 18 23 23 N 1.31618 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47170 * 89.99987 * 24 22 20 26 26 H 1.48496 * 109.47197 * 209.99970 * 24 22 20 27 27 H 1.48502 * 109.47007 * 330.00070 * 24 22 20 28 28 C 1.47021 * 108.70913 * 24.00473 * 19 18 17 29 29 H 1.08998 * 109.47443 * 60.00156 * 1 2 3 30 30 H 1.08996 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47288 * 299.99767 * 1 2 3 32 32 H 1.09002 * 109.47288 * 240.00233 * 2 1 3 33 33 H 1.08999 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46821 * 300.00225 * 3 2 1 35 35 H 1.09002 * 109.46836 * 59.99955 * 3 2 1 36 36 H 1.09001 * 109.46899 * 59.99588 * 5 4 2 37 37 H 1.09001 * 109.47034 * 300.00465 * 5 4 2 38 38 H 1.08998 * 109.58160 * 353.41993 * 9 8 6 39 39 H 1.08998 * 109.58274 * 113.84087 * 9 8 6 40 40 H 1.08991 * 109.49961 * 65.31942 * 10 9 8 41 41 H 1.09003 * 109.49630 * 185.41721 * 10 9 8 42 42 H 1.09004 * 109.46129 * 301.34405 * 11 10 9 43 43 H 1.08999 * 109.45087 * 181.38349 * 11 10 9 44 44 H 1.09008 * 109.49644 * 178.68434 * 12 11 10 45 45 H 1.08999 * 109.50253 * 58.58675 * 12 11 10 46 46 H 1.08995 * 111.00546 * 271.94301 * 17 15 13 47 47 H 1.09004 * 111.00351 * 35.79133 * 17 15 13 48 48 H 1.09000 * 110.42122 * 204.29853 * 18 17 15 49 49 H 1.09002 * 110.30092 * 82.08978 * 18 17 15 50 50 H 0.97002 * 120.00215 * 180.02562 * 23 22 20 51 51 H 1.09001 * 109.88219 * 239.52623 * 28 19 18 52 52 H 1.08990 * 110.01278 * 118.42871 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.5664 -2.5593 1.2290 6 6 1.9984 -3.4105 2.3951 7 8 2.6280 -2.9164 3.3063 8 7 1.6850 -4.7210 2.4254 9 6 0.8379 -5.3125 1.3807 10 6 -0.3357 -6.0359 2.0485 11 6 0.2038 -7.0439 3.0658 12 6 0.9948 -6.3055 4.1479 13 6 2.1836 -5.5852 3.5039 14 1 2.8787 -6.3176 3.0935 15 6 2.8978 -4.7332 4.5551 16 1 3.6359 -4.0828 4.0858 17 6 1.8758 -3.9019 5.3747 18 6 2.6390 -3.7039 6.7105 19 7 3.3642 -4.9694 6.9251 20 6 3.7854 -5.4526 8.1352 21 1 4.3109 -6.3947 8.1873 22 6 3.5371 -4.7313 9.2951 23 7 2.8974 -3.5828 9.2315 24 14 4.1110 -5.3908 10.9459 25 1 5.4823 -4.8950 11.2273 26 1 3.1881 -4.9262 12.0124 27 1 4.1190 -6.8753 10.9102 28 6 3.5596 -5.6273 5.6249 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.0002 -2.9547 0.3105 37 1 0.4792 -2.5721 1.1522 38 1 0.4588 -4.5256 0.7287 39 1 1.4213 -6.0243 0.7967 40 1 -0.9690 -5.3092 2.5572 41 1 -0.9186 -6.5600 1.2911 42 1 0.8568 -7.7557 2.5605 43 1 -0.6286 -7.5774 3.5247 44 1 1.3591 -7.0216 4.8847 45 1 0.3491 -5.5763 4.6369 46 1 1.6731 -2.9459 4.8919 47 1 0.9537 -4.4614 5.5322 48 1 1.9383 -3.5252 7.5260 49 1 3.3409 -2.8742 6.6257 50 1 2.7242 -3.0786 10.0419 51 1 3.0865 -6.6093 5.6315 52 1 4.6241 -5.7302 5.4152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754538021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = 16.600192 kcal Electronic energy + Delta-G solvation = -29282.697721 eV Core-core repulsion = 25603.208172 eV Total energy + Delta-G solvation = -3679.489549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.72332 -37.47933 -36.77138 -35.02017 -33.32226 -32.77779 -31.06888 -29.77236 -28.69109 -27.50351 -27.27207 -24.92439 -24.24234 -22.99056 -22.16814 -21.11139 -20.12206 -19.60354 -18.48534 -16.97058 -16.69428 -16.31263 -15.93076 -15.66852 -15.13104 -14.87029 -14.53654 -14.45951 -14.39797 -14.00889 -13.87009 -13.65218 -13.34811 -13.22585 -13.05849 -12.59185 -12.54863 -12.33866 -12.10696 -11.73215 -11.60962 -11.53349 -11.43386 -11.36165 -11.15657 -11.07293 -10.87714 -10.71262 -10.60436 -10.47607 -10.06881 -9.90978 -9.81216 -9.57536 -9.53339 -9.26462 -8.69187 -8.42796 -8.22586 -7.71410 -6.61237 -5.46900 -2.88298 1.34986 2.40176 2.67627 3.03116 3.48925 3.53120 3.55430 4.35345 4.46974 4.55828 4.60212 4.63020 4.73049 4.84327 4.87922 4.93006 4.97730 5.10196 5.25012 5.26096 5.26915 5.35907 5.42564 5.44451 5.51693 5.54265 5.65045 5.67126 5.81888 5.84149 5.85763 5.86495 5.90087 6.03186 6.11746 6.18022 6.25916 6.37028 6.53988 6.67393 6.75693 6.92853 7.09006 7.17853 7.39373 7.47516 7.77359 7.90072 8.09758 8.35219 8.57496 9.40801 10.02376 10.70410 11.55705 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003285 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.994513 B = 8520.654783 C =10233.734956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.131 4.131 4 S -0.172 6.172 5 C -0.128 4.128 6 C 0.516 3.484 7 O -0.478 6.478 8 N -0.604 5.604 9 C 0.109 3.891 10 C -0.135 4.135 11 C -0.119 4.119 12 C -0.139 4.139 13 C 0.163 3.837 14 H 0.067 0.933 15 C -0.099 4.099 16 H 0.109 0.891 17 C -0.134 4.134 18 C 0.157 3.843 19 N -0.603 5.603 20 C -0.218 4.218 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.136 3.864 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.098 0.902 49 H 0.008 0.992 50 H 0.249 0.751 51 H 0.017 0.983 52 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 1.124 -25.089 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.214 4.214 3 C -0.190 4.190 4 S 0.054 5.946 5 C -0.279 4.279 6 C 0.302 3.698 7 O -0.352 6.352 8 N -0.339 5.339 9 C -0.015 4.015 10 C -0.173 4.173 11 C -0.157 4.157 12 C -0.177 4.177 13 C 0.061 3.939 14 H 0.085 0.915 15 C -0.118 4.118 16 H 0.126 0.874 17 C -0.172 4.172 18 C 0.032 3.968 19 N -0.328 5.328 20 C -0.347 4.347 21 H 0.092 0.908 22 C -0.209 4.209 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.209 1.209 28 C 0.009 3.991 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.116 0.884 49 H 0.026 0.974 50 H 0.060 0.940 51 H 0.035 0.965 52 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.863 1.864 -23.516 24.865 hybrid contribution -0.455 -1.078 -0.363 1.225 sum -8.318 0.786 -23.879 25.299 Atomic orbital electron populations 1.22098 0.93461 1.02139 1.02956 1.23247 0.98861 1.00116 0.99135 1.21559 1.01918 0.92818 1.02691 1.87755 1.74249 1.03342 1.29260 1.23627 1.05084 0.97226 1.01957 1.19573 0.81468 0.82013 0.86758 1.90834 1.37862 1.71702 1.34798 1.47975 1.51096 1.07948 1.26926 1.21710 0.91959 0.97920 0.89886 1.21912 0.97317 0.98982 0.99067 1.21535 0.99875 0.97515 0.96773 1.22187 0.97506 1.00178 0.97818 1.21269 0.94559 0.91422 0.86668 0.91466 1.22814 0.99259 0.95995 0.93705 0.87385 1.23401 0.96786 0.99068 0.97906 1.21874 0.94514 0.86779 0.93611 1.44500 1.66283 1.21402 1.00658 1.19077 1.29533 1.03090 0.82985 0.90804 1.24778 1.01402 0.97047 0.97693 1.69863 1.46227 1.14580 1.26237 0.86120 0.77871 0.77879 0.83930 1.21788 1.21788 1.20861 1.21413 0.96264 0.94468 0.86913 0.91984 0.92798 0.91134 0.89844 0.91575 0.91315 0.91510 0.87981 0.87853 0.90368 0.91397 0.91400 0.91050 0.92099 0.91798 0.90084 0.90165 0.90797 0.93135 0.88407 0.97400 0.93979 0.96521 0.96879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.10 37.16 0.34 -0.69 16 2 C -0.08 -0.69 3.38 -26.73 -0.09 -0.79 16 3 C -0.13 -0.99 9.20 37.16 0.34 -0.65 16 4 S -0.17 -2.13 20.29 -107.50 -2.18 -4.31 16 5 C -0.13 -1.32 4.51 36.00 0.16 -1.16 16 6 C 0.52 7.29 7.34 -10.99 -0.08 7.21 16 7 O -0.48 -8.89 9.00 5.56 0.05 -8.84 16 8 N -0.60 -7.53 2.97 -165.22 -0.49 -8.02 16 9 C 0.11 0.91 6.33 -3.71 -0.02 0.88 16 10 C -0.13 -1.12 6.08 -26.62 -0.16 -1.28 16 11 C -0.12 -1.21 5.88 -26.69 -0.16 -1.37 16 12 C -0.14 -1.94 4.73 -26.61 -0.13 -2.07 16 13 C 0.16 2.42 2.68 -67.60 -0.18 2.24 16 14 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 15 C -0.10 -1.94 2.05 -88.79 -0.18 -2.12 16 16 H 0.11 2.33 5.71 -53.26 -0.30 2.03 16 17 C -0.13 -2.91 5.51 -24.47 -0.13 -3.04 16 18 C 0.16 4.26 5.89 -2.42 -0.01 4.25 16 19 N -0.60 -16.73 3.40 -169.94 -0.58 -17.30 16 20 C -0.22 -6.47 10.27 -15.05 -0.15 -6.62 16 21 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 23 N -0.92 -28.55 10.09 55.49 0.56 -27.99 16 24 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.14 3.10 6.68 -3.06 -0.02 3.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.35 6.92 -51.93 -0.36 -0.01 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.83 8.10 -51.92 -0.42 0.41 16 37 H 0.10 0.87 6.50 -51.92 -0.34 0.53 16 38 H 0.08 0.49 5.96 -51.93 -0.31 0.18 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.25 6.71 -51.92 -0.35 0.90 16 45 H 0.08 1.27 5.60 -51.93 -0.29 0.98 16 46 H 0.07 1.64 5.75 -51.93 -0.30 1.34 16 47 H 0.05 1.07 5.27 -51.93 -0.27 0.79 16 48 H 0.10 2.94 5.87 -51.93 -0.31 2.63 16 49 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 51 H 0.02 0.37 6.30 -51.93 -0.33 0.04 16 52 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -34.30 390.55 -11.39 -45.69 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -9.04 Total: -0.61 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.58 Total: -2.65 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.51 Total: -53.32 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.05 Total: -8.84 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -2.18 Total: -4.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.30 -11.39 -45.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754538021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.293 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds