Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47148 * 2 1 4 4 S 1.81400 * 109.47011 * 119.99765 * 2 1 3 5 5 C 1.81401 * 102.99986 * 65.00320 * 4 2 1 6 6 C 1.50692 * 109.47340 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00132 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.46932 * 120.63294 * 355.38628 * 8 6 5 10 10 C 1.53186 * 108.77691 * 233.63289 * 9 8 6 11 11 C 1.53039 * 109.31319 * 305.36236 * 10 9 8 12 12 C 1.53033 * 109.53688 * 61.36766 * 11 10 9 13 13 C 1.46927 * 120.63149 * 175.41114 * 8 6 5 14 14 H 1.09001 * 109.58812 * 246.29916 * 13 8 6 15 15 C 1.52997 * 109.58800 * 6.58441 * 13 8 6 16 16 H 1.09002 * 110.63738 * 309.04770 * 15 13 8 17 17 C 1.55155 * 110.72317 * 72.18596 * 15 13 8 18 18 C 1.55118 * 101.48823 * 153.73671 * 17 15 13 19 19 N 1.47424 * 104.94017 * 323.22495 * 18 17 15 20 20 C 1.36942 * 125.64942 * 204.03811 * 19 18 17 21 21 H 1.07997 * 120.00655 * 179.97438 * 20 19 18 22 22 C 1.38820 * 119.99745 * 359.95874 * 20 19 18 23 23 N 1.31618 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47170 * 89.99987 * 24 22 20 26 26 H 1.48496 * 109.47197 * 209.99970 * 24 22 20 27 27 H 1.48502 * 109.47007 * 330.00070 * 24 22 20 28 28 C 1.47021 * 108.70913 * 24.00473 * 19 18 17 29 29 H 1.08998 * 109.47443 * 60.00156 * 1 2 3 30 30 H 1.08996 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47288 * 299.99767 * 1 2 3 32 32 H 1.09002 * 109.47288 * 240.00233 * 2 1 3 33 33 H 1.08999 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46821 * 300.00225 * 3 2 1 35 35 H 1.09002 * 109.46836 * 59.99955 * 3 2 1 36 36 H 1.09001 * 109.46899 * 59.99588 * 5 4 2 37 37 H 1.09001 * 109.47034 * 300.00465 * 5 4 2 38 38 H 1.08998 * 109.58160 * 353.41993 * 9 8 6 39 39 H 1.08998 * 109.58274 * 113.84087 * 9 8 6 40 40 H 1.08991 * 109.49961 * 65.31942 * 10 9 8 41 41 H 1.09003 * 109.49630 * 185.41721 * 10 9 8 42 42 H 1.09004 * 109.46129 * 301.34405 * 11 10 9 43 43 H 1.08999 * 109.45087 * 181.38349 * 11 10 9 44 44 H 1.09008 * 109.49644 * 178.68434 * 12 11 10 45 45 H 1.08999 * 109.50253 * 58.58675 * 12 11 10 46 46 H 1.08995 * 111.00546 * 271.94301 * 17 15 13 47 47 H 1.09004 * 111.00351 * 35.79133 * 17 15 13 48 48 H 1.09000 * 110.42122 * 204.29853 * 18 17 15 49 49 H 1.09002 * 110.30092 * 82.08978 * 18 17 15 50 50 H 0.97002 * 120.00215 * 180.02562 * 23 22 20 51 51 H 1.09001 * 109.88219 * 239.52623 * 28 19 18 52 52 H 1.08990 * 110.01278 * 118.42871 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.5664 -2.5593 1.2290 6 6 1.9984 -3.4105 2.3951 7 8 2.6280 -2.9164 3.3063 8 7 1.6850 -4.7210 2.4254 9 6 0.8379 -5.3125 1.3807 10 6 -0.3357 -6.0359 2.0485 11 6 0.2038 -7.0439 3.0658 12 6 0.9948 -6.3055 4.1479 13 6 2.1836 -5.5852 3.5039 14 1 2.8787 -6.3176 3.0935 15 6 2.8978 -4.7332 4.5551 16 1 3.6359 -4.0828 4.0858 17 6 1.8758 -3.9019 5.3747 18 6 2.6390 -3.7039 6.7105 19 7 3.3642 -4.9694 6.9251 20 6 3.7854 -5.4526 8.1352 21 1 4.3109 -6.3947 8.1873 22 6 3.5371 -4.7313 9.2951 23 7 2.8974 -3.5828 9.2315 24 14 4.1110 -5.3908 10.9459 25 1 5.4823 -4.8950 11.2273 26 1 3.1881 -4.9262 12.0124 27 1 4.1190 -6.8753 10.9102 28 6 3.5596 -5.6273 5.6249 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.0002 -2.9547 0.3105 37 1 0.4792 -2.5721 1.1522 38 1 0.4588 -4.5256 0.7287 39 1 1.4213 -6.0243 0.7967 40 1 -0.9690 -5.3092 2.5572 41 1 -0.9186 -6.5600 1.2911 42 1 0.8568 -7.7557 2.5605 43 1 -0.6286 -7.5774 3.5247 44 1 1.3591 -7.0216 4.8847 45 1 0.3491 -5.5763 4.6369 46 1 1.6731 -2.9459 4.8919 47 1 0.9537 -4.4614 5.5322 48 1 1.9383 -3.5252 7.5260 49 1 3.3409 -2.8742 6.6257 50 1 2.7242 -3.0786 10.0419 51 1 3.0865 -6.6093 5.6315 52 1 4.6241 -5.7302 5.4152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754538021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -3.699318 kcal Electronic energy + Delta-G solvation = -29283.577974 eV Core-core repulsion = 25603.208172 eV Total energy + Delta-G solvation = -3680.369802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.89051 -38.91434 -38.15953 -35.61978 -35.03654 -33.88442 -32.74268 -30.66982 -30.62357 -28.97526 -28.04072 -26.59788 -25.53529 -24.31500 -22.84711 -22.34207 -21.76384 -21.10053 -19.66166 -18.92140 -17.68541 -17.47971 -17.02618 -16.83509 -16.65714 -16.27925 -15.75358 -15.68300 -15.24475 -15.21427 -14.85791 -14.69995 -14.46357 -14.26625 -14.21991 -14.01745 -13.74071 -13.54676 -13.30207 -13.10334 -13.02435 -12.89587 -12.68655 -12.38249 -12.23177 -12.18917 -12.12649 -12.06458 -12.03166 -11.84591 -11.64339 -11.54086 -11.50119 -11.21122 -11.06620 -10.72025 -10.55914 -9.94758 -9.39797 -8.87060 -8.64149 -7.75531 -5.21870 0.55238 1.42520 1.46675 1.55281 1.64073 1.66181 2.05211 2.49280 3.30990 3.43990 3.73221 3.82886 3.88074 3.90387 3.98059 3.99978 4.07984 4.13073 4.19824 4.22978 4.30941 4.36978 4.37815 4.43192 4.60422 4.68738 4.72376 4.74846 4.79483 4.81483 4.87734 4.89238 4.94838 4.97836 5.00460 5.12420 5.23530 5.24684 5.26886 5.29318 5.29885 5.35150 5.44183 5.53740 5.55517 5.65005 5.82649 5.84203 6.29572 6.48228 7.10024 7.29344 7.78876 8.46443 9.26064 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003285 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.994513 B = 8520.654783 C =10233.734956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.133 4.133 4 S -0.269 6.269 5 C -0.102 4.102 6 C 0.507 3.493 7 O -0.535 6.535 8 N -0.600 5.600 9 C 0.102 3.898 10 C -0.130 4.130 11 C -0.114 4.114 12 C -0.135 4.135 13 C 0.171 3.829 14 H 0.085 0.915 15 C -0.080 4.080 16 H 0.089 0.911 17 C -0.109 4.109 18 C 0.164 3.836 19 N -0.623 5.623 20 C -0.240 4.240 21 H 0.082 0.918 22 C -0.074 4.074 23 N -0.952 5.952 24 Si 0.986 3.014 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.265 1.265 28 C 0.130 3.870 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.065 0.935 49 H -0.037 1.037 50 H 0.245 0.755 51 H 0.034 0.966 52 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.355 -0.925 -28.674 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.190 4.190 3 C -0.191 4.191 4 S -0.044 6.044 5 C -0.253 4.253 6 C 0.295 3.705 7 O -0.413 6.413 8 N -0.334 5.334 9 C -0.019 4.019 10 C -0.168 4.168 11 C -0.151 4.151 12 C -0.173 4.173 13 C 0.067 3.933 14 H 0.103 0.897 15 C -0.099 4.099 16 H 0.107 0.893 17 C -0.147 4.147 18 C 0.039 3.961 19 N -0.349 5.349 20 C -0.369 4.369 21 H 0.100 0.900 22 C -0.266 4.266 23 N -0.602 5.602 24 Si 0.813 3.187 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.189 1.189 28 C 0.005 3.995 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.083 0.917 49 H -0.019 1.019 50 H 0.055 0.945 51 H 0.052 0.948 52 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -9.443 -0.230 -27.163 28.758 hybrid contribution 0.046 -0.406 0.703 0.813 sum -9.397 -0.636 -26.460 28.086 Atomic orbital electron populations 1.22087 0.92225 1.02909 1.03226 1.23277 0.99595 0.99472 0.96684 1.21602 1.01436 0.92839 1.03228 1.88176 1.75778 1.06788 1.33612 1.23483 1.06481 0.94301 1.00985 1.20281 0.80464 0.82590 0.87204 1.90816 1.40492 1.72816 1.37199 1.48071 1.51080 1.07307 1.26966 1.22113 0.91545 0.99297 0.88961 1.21917 0.97328 0.98394 0.99205 1.21513 0.99751 0.97875 0.96000 1.22089 0.97083 0.99367 0.98757 1.21031 0.94941 0.91016 0.86309 0.89727 1.22576 0.98308 0.95214 0.93818 0.89299 1.23136 0.96856 0.99629 0.95071 1.21602 0.93243 0.85777 0.95521 1.44811 1.66412 1.21634 1.02049 1.19529 1.29689 1.03561 0.84124 0.90008 1.25760 1.01743 0.97385 1.01686 1.70150 1.47324 1.15896 1.26850 0.84969 0.76994 0.78087 0.78612 1.21508 1.21770 1.18937 1.21636 0.96428 0.95571 0.85880 0.89825 0.91810 0.92645 0.87990 0.92469 0.88716 0.92853 0.84805 0.85230 0.87429 0.89072 0.92590 0.87652 0.90448 0.91247 0.92020 0.92638 0.91117 0.92414 0.91689 1.01882 0.94515 0.94780 0.97423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.10 71.98 0.66 -0.97 16 2 C -0.06 -0.89 3.38 30.59 0.10 -0.78 16 3 C -0.13 -1.86 9.20 71.98 0.66 -1.19 16 4 S -0.27 -6.63 20.29 -56.49 -1.15 -7.77 16 5 C -0.10 -1.85 4.51 71.23 0.32 -1.52 16 6 C 0.51 13.78 7.34 87.66 0.64 14.42 16 7 O -0.54 -20.69 9.00 -3.03 -0.03 -20.72 16 8 N -0.60 -13.51 2.97 -795.04 -2.36 -15.87 16 9 C 0.10 1.19 6.33 86.36 0.55 1.74 16 10 C -0.13 -1.57 6.08 30.67 0.19 -1.39 16 11 C -0.11 -1.92 5.88 30.62 0.18 -1.74 16 12 C -0.13 -3.61 4.73 30.67 0.15 -3.47 16 13 C 0.17 4.85 2.68 44.97 0.12 4.97 16 14 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.08 -3.25 2.05 -9.61 -0.02 -3.27 16 16 H 0.09 4.04 5.71 -23.46 -0.13 3.90 16 17 C -0.11 -5.02 5.51 32.06 0.18 -4.84 16 18 C 0.16 9.59 5.89 86.93 0.51 10.10 16 19 N -0.62 -36.33 3.40 -691.57 -2.35 -38.68 16 20 C -0.24 -14.72 10.27 84.03 0.86 -13.85 16 21 H 0.08 4.75 7.83 -2.91 -0.02 4.72 16 22 C -0.07 -4.54 5.49 84.86 0.47 -4.08 16 23 N -0.95 -62.16 10.09 21.65 0.22 -61.95 16 24 Si 0.99 48.82 29.55 68.60 2.03 50.85 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 27 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 28 C 0.13 6.12 6.68 86.73 0.58 6.70 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.59 6.92 -2.39 -0.02 0.57 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.13 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.13 1.66 6.50 -2.39 -0.02 1.65 16 38 H 0.11 0.68 5.96 -2.39 -0.01 0.67 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.87 6.71 -2.38 -0.02 1.85 16 45 H 0.06 1.75 5.60 -2.39 -0.01 1.74 16 46 H 0.07 3.34 5.75 -2.39 -0.01 3.33 16 47 H 0.06 2.55 5.27 -2.39 -0.01 2.54 16 48 H 0.07 4.22 5.87 -2.39 -0.01 4.20 16 49 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 50 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 51 H 0.03 1.49 6.30 -2.39 -0.02 1.48 16 52 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -82.72 390.55 3.28 -79.44 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.77 Total: 13.86 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.14 Total: 0.83 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -4.49 Total: -116.49 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.03 Total: -20.72 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -1.15 Total: -7.77 kcal Total: -82.72 3.28 -79.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754538021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.744 kcal (2) G-P(sol) polarization free energy of solvation -82.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds