Wall clock time and date at job start Sat Apr 11 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99795 * 2 1 4 4 C 1.50702 * 109.47028 * 66.04375 * 3 2 1 5 5 H 1.07989 * 120.00232 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99438 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00276 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99488 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47364 * 59.99851 * 8 6 4 10 10 H 1.48501 * 109.47165 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47168 * 299.99550 * 8 6 4 12 12 C 1.46902 * 111.00071 * 236.04847 * 2 1 3 13 13 C 1.53000 * 109.46751 * 199.83123 * 12 2 1 14 14 H 1.09002 * 109.46963 * 300.49792 * 13 12 2 15 15 O 1.42893 * 109.47380 * 60.50381 * 13 12 2 16 16 C 1.53007 * 109.46647 * 180.50106 * 13 12 2 17 17 N 1.46903 * 109.46605 * 179.97438 * 16 13 12 18 18 C 1.46898 * 110.99586 * 180.02562 * 17 16 13 19 19 H 1.09002 * 109.47595 * 34.99978 * 18 17 16 20 20 C 1.52997 * 109.47148 * 274.99610 * 18 17 16 21 21 O 1.42893 * 109.47720 * 295.00201 * 20 18 17 22 22 C 1.53003 * 109.47250 * 154.99969 * 18 17 16 23 23 C 1.50703 * 109.46973 * 294.99882 * 22 18 17 24 24 C 1.38245 * 119.97345 * 269.72415 * 23 22 18 25 25 C 1.38198 * 120.02104 * 179.72711 * 24 23 22 26 26 C 1.38458 * 119.97585 * 0.56849 * 25 24 23 27 27 F 1.35103 * 120.02790 * 179.68429 * 26 25 24 28 28 C 1.38457 * 119.94914 * 359.70278 * 26 25 24 29 29 C 1.38200 * 119.97687 * 0.02562 * 28 26 25 30 30 H 1.08996 * 109.46746 * 178.41273 * 1 2 3 31 31 H 1.08999 * 109.46872 * 298.41620 * 1 2 3 32 32 H 1.08997 * 109.46723 * 58.41819 * 1 2 3 33 33 H 1.08997 * 109.47134 * 186.04933 * 3 2 1 34 34 H 1.09002 * 109.47069 * 306.04511 * 3 2 1 35 35 H 0.97005 * 119.99921 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46608 * 319.82896 * 12 2 1 37 37 H 1.09001 * 109.47150 * 79.82838 * 12 2 1 38 38 H 0.96699 * 114.00248 * 59.99565 * 15 13 12 39 39 H 1.08992 * 109.47189 * 299.99651 * 16 13 12 40 40 H 1.08992 * 109.47114 * 60.00178 * 16 13 12 41 41 H 1.00896 * 111.00054 * 303.95226 * 17 16 13 42 42 H 1.09005 * 109.46759 * 55.00478 * 20 18 17 43 43 H 1.09007 * 109.47383 * 174.99902 * 20 18 17 44 44 H 0.96697 * 114.00558 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.46889 * 54.99913 * 22 18 17 46 46 H 1.08996 * 109.47068 * 174.99991 * 22 18 17 47 47 H 1.07991 * 119.98614 * 359.97438 * 24 23 22 48 48 H 1.08004 * 120.00910 * 180.25770 * 25 24 23 49 49 H 1.08004 * 120.01272 * 179.97438 * 28 26 25 50 50 H 1.07997 * 119.99172 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7119 4.0020 0.6149 8 14 1.5829 4.1869 3.1381 9 1 2.1756 3.4299 4.2698 10 1 2.1149 5.5733 3.1381 11 1 0.1056 4.2231 3.2864 12 6 1.9955 -0.7659 -1.1376 13 6 3.4451 -1.1661 -0.8558 14 1 4.0462 -0.2699 -0.7024 15 8 3.4951 -1.9799 0.3178 16 6 3.9974 -1.9532 -2.0460 17 7 5.3895 -2.3369 -1.7756 18 6 5.9541 -3.0955 -2.8998 19 1 5.5498 -2.7120 -3.8366 20 6 5.5873 -4.5735 -2.7531 21 8 6.2141 -5.1064 -1.5847 22 6 7.4768 -2.9458 -2.9023 23 6 7.8398 -1.5078 -3.1695 24 6 8.0317 -1.0736 -4.4679 25 6 8.3590 0.2462 -4.7143 26 6 8.5063 1.1310 -3.6596 27 9 8.8326 2.4200 -3.8989 28 6 8.3194 0.6937 -2.3593 29 6 7.9866 -0.6253 -2.1154 30 1 -0.3633 -1.0272 -0.0285 31 1 -0.3633 0.4890 0.9038 32 1 -0.3633 0.5382 -0.8755 33 1 3.0797 1.3445 -0.1083 34 1 1.5611 1.9274 -0.8309 35 1 2.9858 4.9184 0.7765 36 1 1.3926 -1.6624 -1.2821 37 1 1.9563 -0.1526 -2.0379 38 1 2.9812 -2.7964 0.2524 39 1 3.3964 -2.8494 -2.1994 40 1 3.9594 -1.3325 -2.9411 41 1 5.9537 -1.5270 -1.5666 42 1 4.5055 -4.6721 -2.6621 43 1 5.9294 -5.1217 -3.6310 44 1 6.0246 -6.0416 -1.4285 45 1 7.8731 -3.2465 -1.9325 46 1 7.9028 -3.5787 -3.6809 47 1 7.9219 -1.7651 -5.2900 48 1 8.5048 0.5862 -5.7291 49 1 8.4344 1.3829 -1.5357 50 1 7.8411 -0.9667 -1.1013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574572481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:23 Heat of formation + Delta-G solvation = -143.965025 kcal Electronic energy + Delta-G solvation = -30180.012220 eV Core-core repulsion = 25927.346865 eV Total energy + Delta-G solvation = -4252.665356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95225 -40.60330 -39.48393 -38.35933 -37.07847 -35.93865 -34.61096 -33.45946 -32.15337 -31.20915 -29.79708 -29.15471 -26.83967 -26.67950 -25.15314 -24.08243 -23.03409 -22.48771 -21.81950 -21.05428 -18.71927 -18.62113 -18.25970 -17.66104 -17.39200 -16.94430 -16.84587 -16.68568 -16.57447 -16.24723 -15.90757 -15.71181 -15.26064 -15.13254 -15.03097 -14.65184 -14.49689 -14.39454 -14.21973 -14.18372 -13.96102 -13.51120 -13.16987 -13.05090 -13.01779 -12.83705 -12.64404 -12.58020 -12.42682 -12.34509 -12.23008 -12.15276 -11.91441 -11.70096 -11.49663 -11.33694 -10.71426 -10.62543 -10.60749 -10.13042 -9.55838 -9.25623 -8.95237 -8.21436 -6.31176 0.08236 0.21090 1.38610 1.42861 1.50409 2.39398 2.53300 2.94764 3.11216 3.25925 3.43961 3.59126 3.69853 3.73008 3.76681 3.91681 3.93109 4.16852 4.18917 4.26037 4.29750 4.36666 4.42401 4.45555 4.56739 4.58643 4.60386 4.68066 4.74970 4.77209 4.85217 4.87518 4.96046 5.02532 5.06659 5.10829 5.12750 5.21107 5.22954 5.26433 5.29347 5.52914 5.63661 5.88512 6.04920 6.16433 6.33336 6.38470 6.64719 6.84591 7.14673 7.16217 7.38370 8.89456 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008398 B = 0.003302 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.212880 B = 8477.777093 C =10953.665747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.541 5.541 3 C 0.212 3.788 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.027 3.973 13 C 0.128 3.872 14 H 0.051 0.949 15 O -0.549 6.549 16 C 0.041 3.959 17 N -0.677 5.677 18 C 0.087 3.913 19 H 0.064 0.936 20 C 0.092 3.908 21 O -0.577 6.577 22 C -0.068 4.068 23 C -0.098 4.098 24 C -0.084 4.084 25 C -0.152 4.152 26 C 0.067 3.933 27 F -0.154 7.154 28 C -0.164 4.164 29 C -0.099 4.099 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.007 0.993 33 H 0.000 1.000 34 H -0.043 1.043 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.024 0.976 38 H 0.377 0.623 39 H 0.095 0.905 40 H 0.033 0.967 41 H 0.335 0.665 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.388 0.612 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.166 0.834 48 H 0.154 0.846 49 H 0.131 0.869 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -20.011 -14.085 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.265 5.265 3 C 0.085 3.915 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.189 1.189 12 C -0.102 4.102 13 C 0.068 3.932 14 H 0.069 0.931 15 O -0.354 6.354 16 C -0.089 4.089 17 N -0.310 5.310 18 C -0.023 4.023 19 H 0.082 0.918 20 C 0.013 3.987 21 O -0.384 6.384 22 C -0.106 4.106 23 C -0.098 4.098 24 C -0.102 4.102 25 C -0.171 4.171 26 C 0.048 3.952 27 F -0.133 7.133 28 C -0.183 4.183 29 C -0.117 4.117 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.018 0.982 34 H -0.025 1.025 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.042 0.958 38 H 0.224 0.776 39 H 0.113 0.887 40 H 0.051 0.949 41 H 0.156 0.844 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.236 0.764 45 H 0.097 0.903 46 H 0.123 0.877 47 H 0.183 0.817 48 H 0.172 0.828 49 H 0.149 0.851 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.699 -19.494 -13.090 25.405 hybrid contribution -0.711 1.835 -0.846 2.142 sum 8.988 -17.659 -13.937 24.225 Atomic orbital electron populations 1.22226 0.87407 1.01184 0.99818 1.61932 1.07914 1.14992 1.41679 1.19352 0.93503 0.83951 0.94654 1.21457 1.34847 0.97449 1.02471 0.92036 1.25918 0.94992 0.98075 1.00701 1.70083 1.39415 1.11828 1.36276 0.85457 0.78968 0.77141 0.79202 1.19497 1.20761 1.18928 1.22808 0.97222 0.98575 0.91646 1.21590 0.93847 0.92317 0.85472 0.93076 1.86639 1.74261 1.36542 1.37930 1.22580 0.91222 0.99484 0.95619 1.60497 1.02047 1.28225 1.40253 1.21761 0.94117 0.94017 0.92367 0.91841 1.22180 0.96233 0.92355 0.87925 1.86554 1.74591 1.30887 1.46369 1.20644 0.94714 0.90838 1.04380 1.20260 0.99420 0.96974 0.93147 1.21258 0.97022 0.94797 0.97074 1.21430 1.02592 0.93980 0.99056 1.18085 1.03142 0.78920 0.95041 1.91468 1.90428 1.36053 1.95335 1.21355 1.03116 0.98031 0.95795 1.21147 0.98092 0.92092 1.00347 0.89715 0.92741 0.97445 0.98179 1.02545 0.92777 0.88297 0.95820 0.77558 0.88683 0.94891 0.84449 0.93710 0.91319 0.76360 0.90257 0.87715 0.81700 0.82816 0.85111 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.31 127.69 1.19 2.80 16 2 N -0.54 -23.92 4.56 -927.02 -4.23 -28.14 16 3 C 0.21 11.79 4.55 85.56 0.39 12.17 16 4 C -0.52 -31.07 8.54 25.60 0.22 -30.86 16 5 H 0.06 3.58 7.10 -2.92 -0.02 3.56 16 6 C 0.00 0.05 5.46 84.66 0.46 0.52 16 7 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 8 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.03 0.92 4.66 86.30 0.40 1.32 16 13 C 0.13 4.30 3.24 30.60 0.10 4.40 16 14 H 0.05 2.18 6.78 -2.39 -0.02 2.17 16 15 O -0.55 -19.12 13.08 -148.98 -1.95 -21.07 16 16 C 0.04 1.00 5.15 86.30 0.44 1.44 16 17 N -0.68 -16.14 6.13 -491.57 -3.01 -19.15 16 18 C 0.09 1.46 2.43 44.92 0.11 1.57 16 19 H 0.06 0.97 7.80 -2.39 -0.02 0.95 16 20 C 0.09 1.22 6.80 71.98 0.49 1.71 16 21 O -0.58 -9.41 12.83 -148.98 -1.91 -11.32 16 22 C -0.07 -1.07 4.70 29.85 0.14 -0.93 16 23 C -0.10 -1.82 4.84 -19.86 -0.10 -1.92 16 24 C -0.08 -1.34 9.70 22.26 0.22 -1.13 16 25 C -0.15 -2.97 10.03 22.31 0.22 -2.74 16 26 C 0.07 1.72 7.30 22.37 0.16 1.89 16 27 F -0.15 -4.43 17.27 44.97 0.78 -3.66 16 28 C -0.16 -4.28 10.03 22.31 0.22 -4.06 16 29 C -0.10 -2.29 8.04 22.26 0.18 -2.11 16 30 H 0.08 2.54 7.94 -2.39 -0.02 2.52 16 31 H 0.05 2.28 6.90 -2.39 -0.02 2.27 16 32 H 0.01 0.27 8.13 -2.39 -0.02 0.25 16 33 H 0.00 0.01 6.63 -2.39 -0.02 -0.01 16 34 H -0.04 -2.59 8.11 -2.39 -0.02 -2.61 16 35 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 36 H 0.10 2.63 7.80 -2.39 -0.02 2.61 16 37 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 38 H 0.38 9.81 9.05 -74.06 -0.67 9.14 16 39 H 0.09 1.85 7.36 -2.39 -0.02 1.83 16 40 H 0.03 0.80 8.05 -2.39 -0.02 0.78 16 41 H 0.34 9.10 5.49 -89.70 -0.49 8.61 16 42 H 0.04 0.59 7.36 -2.38 -0.02 0.57 16 43 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.39 3.04 9.12 -74.06 -0.68 2.36 16 45 H 0.08 1.53 7.67 -2.39 -0.02 1.51 16 46 H 0.10 1.09 8.08 -2.39 -0.02 1.07 16 47 H 0.17 1.47 8.06 -2.92 -0.02 1.44 16 48 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 49 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 50 H 0.14 3.14 7.53 -2.91 -0.02 3.12 16 Total: -1.00 -76.78 408.28 -4.03 -80.81 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.87 Total: 28.56 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.85 Total: -15.93 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -6.95 Total: -105.41 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -3.86 Total: -32.39 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.78 -4.03 -80.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574572481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.159 kcal (2) G-P(sol) polarization free energy of solvation -76.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds