Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99922 * 2 1 4 4 C 1.53002 * 109.47006 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47563 * 184.99915 * 4 3 2 6 6 N 1.46902 * 109.47190 * 64.99466 * 4 3 2 7 7 C 1.46904 * 110.99534 * 85.00360 * 6 4 3 8 8 C 1.53000 * 109.47085 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.47253 * 305.00344 * 8 7 6 10 10 O 1.42900 * 109.47194 * 64.99751 * 8 7 6 11 11 C 1.52998 * 109.47107 * 184.99848 * 8 7 6 12 12 N 1.46899 * 109.46858 * 175.04575 * 11 8 7 13 13 C 1.46903 * 110.99991 * 163.94840 * 12 11 8 14 14 C 1.46902 * 111.00138 * 287.89426 * 12 11 8 15 15 C 1.50702 * 109.47206 * 170.00004 * 14 12 11 16 16 H 1.07990 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00136 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47193 * 60.00363 * 19 17 15 21 21 H 1.48498 * 109.46985 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46869 * 300.00247 * 19 17 15 23 23 C 1.50704 * 109.46969 * 305.00020 * 4 3 2 24 24 C 1.38251 * 119.97502 * 79.72563 * 23 4 3 25 25 C 1.38195 * 120.02170 * 179.76991 * 24 23 4 26 26 C 1.38458 * 119.97788 * 0.49663 * 25 24 23 27 27 F 1.35100 * 120.02707 * 179.76954 * 26 25 24 28 28 C 1.38461 * 119.94951 * 359.75949 * 26 25 24 29 29 C 1.38206 * 119.96872 * 359.97438 * 28 26 25 30 30 H 1.09008 * 109.47071 * 300.00373 * 1 2 3 31 31 H 1.09001 * 109.47156 * 59.99881 * 1 2 3 32 32 H 1.08995 * 109.47220 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47251 * 60.00234 * 3 2 1 34 34 H 1.08997 * 109.47508 * 299.99571 * 3 2 1 35 35 H 1.00901 * 111.00190 * 321.05025 * 6 4 3 36 36 H 1.08996 * 109.47355 * 59.99871 * 7 6 4 37 37 H 1.09001 * 109.46826 * 299.99768 * 7 6 4 38 38 H 0.96698 * 114.00266 * 60.00042 * 10 8 7 39 39 H 1.08997 * 109.47560 * 55.04389 * 11 8 7 40 40 H 1.08998 * 109.46907 * 295.04026 * 11 8 7 41 41 H 1.08998 * 109.47439 * 189.27288 * 13 12 11 42 42 H 1.08994 * 109.47470 * 69.26701 * 13 12 11 43 43 H 1.09004 * 109.46549 * 309.26905 * 13 12 11 44 44 H 1.08997 * 109.47475 * 290.00611 * 14 12 11 45 45 H 1.09000 * 109.46537 * 50.00068 * 14 12 11 46 46 H 0.97003 * 119.99947 * 179.97438 * 18 17 15 47 47 H 1.07994 * 119.98382 * 0.02562 * 24 23 4 48 48 H 1.08006 * 120.01284 * 180.25502 * 25 24 23 49 49 H 1.07991 * 120.01446 * 179.97438 * 28 26 25 50 50 H 1.07997 * 119.98126 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 0.0902 6 7 3.9779 0.5621 -1.2542 7 6 4.1209 1.5655 -2.3177 8 6 4.5813 0.8808 -3.6062 9 1 5.4953 0.3193 -3.4126 10 8 3.5621 -0.0109 -4.0623 11 6 4.8501 1.9391 -4.6780 12 7 5.4046 1.2934 -5.8753 13 6 5.3224 2.1849 -7.0400 14 6 6.7876 0.8552 -5.6445 15 6 7.2380 -0.0117 -6.7920 16 1 6.5645 -0.2162 -7.6110 17 6 8.5104 -0.5427 -6.7967 18 7 9.3308 -0.2931 -5.7995 19 14 9.0691 -1.6166 -8.2194 20 1 9.0001 -0.8396 -9.4829 21 1 10.4671 -2.0596 -7.9859 22 1 8.1840 -2.8048 -8.3199 23 6 3.9714 0.3328 1.1649 24 6 3.8912 -1.0449 1.0810 25 6 4.2951 -1.8271 2.1462 26 6 4.7706 -1.2304 3.3016 27 9 5.1613 -1.9941 4.3453 28 6 4.8454 0.1495 3.3865 29 6 4.4461 0.9296 2.3179 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.3478 -0.1744 -1.5344 36 1 4.8582 2.3101 -2.0180 37 1 3.1610 2.0529 -2.4887 38 1 2.7187 0.4211 -4.2545 39 1 5.5629 2.6700 -4.2963 40 1 3.9173 2.4410 -4.9349 41 1 5.5843 1.6305 -7.9412 42 1 6.0151 3.0164 -6.9107 43 1 4.3066 2.5693 -7.1323 44 1 7.4375 1.7271 -5.5708 45 1 6.8380 0.2851 -4.7169 46 1 10.2259 -0.6670 -5.8026 47 1 3.5167 -1.5099 0.1811 48 1 4.2363 -2.9035 2.0790 49 1 5.2157 0.6160 4.2873 50 1 4.5048 2.0060 2.3837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859719.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -106.218244 kcal Electronic energy + Delta-G solvation = -29846.685712 eV Core-core repulsion = 25595.657180 eV Total energy + Delta-G solvation = -4251.028532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.95715 -39.86943 -38.26685 -37.85750 -35.97586 -35.03205 -32.45070 -31.72053 -31.19752 -29.41430 -28.41046 -27.26508 -26.44678 -25.35600 -23.66831 -23.31292 -22.81067 -21.47349 -20.80051 -19.98391 -17.81365 -17.12605 -16.58887 -16.51934 -16.25887 -16.10214 -15.95060 -15.65562 -15.56692 -15.18949 -14.68940 -14.56181 -14.21728 -14.16998 -13.67257 -13.61913 -13.51494 -13.27291 -13.17352 -12.83644 -12.65656 -12.33579 -12.05649 -11.91463 -11.83551 -11.78316 -11.36666 -11.34320 -11.12905 -11.03171 -10.91585 -10.69920 -10.61655 -10.32055 -10.01767 -9.71876 -9.60600 -9.15359 -9.11407 -8.66463 -8.43845 -8.36501 -7.18359 -5.96699 -3.97318 1.05547 1.19756 3.31544 3.38043 3.41948 3.45308 3.57411 4.02209 4.18659 4.45757 4.48385 4.62630 4.71186 4.73844 4.80740 4.93712 4.98508 5.01974 5.06384 5.12553 5.14519 5.21659 5.34928 5.37102 5.38595 5.40913 5.43606 5.58185 5.72456 5.79489 5.81717 5.93857 6.03581 6.04458 6.08564 6.20522 6.35794 6.43017 6.56438 6.71923 6.74943 6.81013 6.98989 7.31939 7.35055 7.38719 7.84199 8.07451 8.14690 8.24412 8.59896 9.09311 9.66300 11.14310 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010866 B = 0.002540 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.311805 B =11022.087389 C =12615.441013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.033 3.967 4 C 0.131 3.869 5 H 0.099 0.901 6 N -0.672 5.672 7 C 0.029 3.971 8 C 0.114 3.886 9 H 0.115 0.885 10 O -0.541 6.541 11 C 0.028 3.972 12 N -0.532 5.532 13 C 0.041 3.959 14 C 0.192 3.808 15 C -0.505 4.505 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.074 4.074 24 C -0.043 4.043 25 C -0.158 4.158 26 C 0.091 3.909 27 F -0.145 7.145 28 C -0.159 4.159 29 C -0.090 4.090 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.359 0.641 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.358 0.642 39 H 0.031 0.969 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.011 0.989 43 H 0.041 0.959 44 H -0.012 1.012 45 H 0.033 0.967 46 H 0.261 0.739 47 H 0.136 0.864 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.629 5.851 17.157 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.045 4.045 4 C 0.020 3.980 5 H 0.117 0.883 6 N -0.304 5.304 7 C -0.101 4.101 8 C 0.054 3.946 9 H 0.133 0.867 10 O -0.343 6.343 11 C -0.102 4.102 12 N -0.256 5.256 13 C -0.107 4.107 14 C 0.067 3.933 15 C -0.544 4.544 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.075 4.075 24 C -0.061 4.061 25 C -0.176 4.176 26 C 0.072 3.928 27 F -0.124 7.124 28 C -0.178 4.178 29 C -0.108 4.108 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.180 0.820 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.202 0.798 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.006 0.994 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.154 0.846 48 H 0.151 0.849 49 H 0.149 0.851 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.440 4.761 17.381 24.394 hybrid contribution -0.518 1.002 -0.552 1.256 sum -16.958 5.763 16.830 24.577 Atomic orbital electron populations 1.22734 0.80982 1.02906 0.99743 1.87895 1.19618 1.27019 1.95315 1.23259 0.95161 0.85565 1.00562 1.20575 0.90340 0.97517 0.89529 0.88293 1.60404 1.55124 1.12816 1.02058 1.22753 0.99666 0.94740 0.92895 1.22022 0.92371 0.91343 0.88822 0.86712 1.86720 1.22783 1.36640 1.88196 1.22662 0.98949 0.95309 0.93309 1.62060 1.24792 1.37131 1.01625 1.22182 0.97995 0.94830 0.95732 1.19792 0.80875 0.94596 0.98005 1.21099 0.97657 1.29756 1.05854 0.92017 1.24979 0.96673 0.96698 0.96270 1.69945 1.07330 1.45389 1.31210 0.86569 0.77508 0.80939 0.82437 1.20395 1.21392 1.20122 1.19633 0.99334 0.94229 0.94258 1.20823 0.95018 0.92817 0.97467 1.21185 1.02433 1.01120 0.92903 1.17746 1.00801 0.89004 0.85226 1.91480 1.88837 1.75729 1.56330 1.20998 1.04325 0.91855 1.00630 1.20810 0.97986 0.99763 0.92273 0.94298 0.94144 0.89463 0.92841 0.92923 0.81977 0.90241 0.95430 0.79759 0.95107 0.92359 0.90958 0.97030 0.94038 0.99406 0.94868 0.92919 0.84578 0.84947 0.85112 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.52 8.47 -35.23 -0.30 -3.82 16 3 C 0.03 0.27 5.60 37.16 0.21 0.48 16 4 C 0.13 1.24 2.65 -68.86 -0.18 1.06 16 5 H 0.10 0.83 7.66 -51.93 -0.40 0.43 16 6 N -0.67 -7.91 5.71 -107.95 -0.62 -8.53 16 7 C 0.03 0.35 5.16 -3.82 -0.02 0.33 16 8 C 0.11 1.81 3.26 -26.73 -0.09 1.72 16 9 H 0.12 2.29 6.46 -51.93 -0.34 1.96 16 10 O -0.54 -8.65 12.80 -35.23 -0.45 -9.10 16 11 C 0.03 0.46 4.61 -3.83 -0.02 0.45 16 12 N -0.53 -11.45 4.66 -244.37 -1.14 -12.58 16 13 C 0.04 0.80 9.32 60.07 0.56 1.36 16 14 C 0.19 5.06 4.57 -4.97 -0.02 5.03 16 15 C -0.51 -14.48 8.58 -34.44 -0.30 -14.78 16 16 H 0.06 1.76 7.10 -52.49 -0.37 1.38 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 19 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 C -0.07 -0.78 4.83 -104.62 -0.51 -1.28 16 24 C -0.04 -0.49 8.31 -39.59 -0.33 -0.82 16 25 C -0.16 -1.78 10.03 -39.52 -0.40 -2.18 16 26 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 27 F -0.15 -1.77 17.27 2.25 0.04 -1.73 16 28 C -0.16 -1.60 10.03 -39.51 -0.40 -2.00 16 29 C -0.09 -0.85 9.67 -39.59 -0.38 -1.23 16 30 H 0.04 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.40 7.35 -51.93 -0.38 0.02 16 35 H 0.36 4.44 6.85 -39.29 -0.27 4.17 16 36 H 0.08 0.92 8.05 -51.93 -0.42 0.51 16 37 H 0.03 0.27 7.36 -51.93 -0.38 -0.11 16 38 H 0.36 4.24 9.05 45.56 0.41 4.65 16 39 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 40 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 41 H 0.07 1.50 7.02 -51.93 -0.36 1.13 16 42 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 43 H 0.04 0.66 7.88 -51.93 -0.41 0.26 16 44 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16 45 H 0.03 0.94 6.34 -51.93 -0.33 0.61 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.14 1.57 6.99 -52.49 -0.37 1.21 16 48 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 49 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.13 0.89 8.04 -52.49 -0.42 0.47 16 LS Contribution 408.58 15.07 6.16 6.16 Total: -1.00 -32.72 408.58 -9.10 -41.83 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.37 Total: 5.38 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.14 Total: -8.27 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -1.02 Total: -47.53 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.75 Total: -12.92 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.72 -9.10 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859719.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.393 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds