Wall clock time and date at job start Sat Apr 11 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99982 * 2 1 4 4 C 1.52998 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46728 * 185.00089 * 4 3 2 6 6 N 1.46898 * 109.47270 * 64.99816 * 4 3 2 7 7 C 1.46903 * 110.99586 * 84.99924 * 6 4 3 8 8 C 1.53007 * 109.46605 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47183 * 60.00385 * 8 7 6 10 10 O 1.42893 * 109.47006 * 299.99891 * 8 7 6 11 11 C 1.53000 * 109.46647 * 179.97438 * 8 7 6 12 12 N 1.46902 * 109.46751 * 180.50106 * 11 8 7 13 13 C 1.46908 * 111.00071 * 199.83123 * 12 11 8 14 14 C 1.46904 * 110.99891 * 75.88024 * 12 11 8 15 15 C 1.50702 * 109.47028 * 189.99631 * 14 12 11 16 16 H 1.07989 * 120.00232 * 0.02562 * 15 14 12 17 17 C 1.37882 * 119.99438 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00276 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99488 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47388 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47560 * 119.99823 * 19 17 15 22 22 H 1.48506 * 109.46945 * 239.99878 * 19 17 15 23 23 C 1.50705 * 109.46967 * 304.99717 * 4 3 2 24 24 C 1.38243 * 119.97079 * 79.72843 * 23 4 3 25 25 C 1.38197 * 120.02485 * 179.76648 * 24 23 4 26 26 C 1.38463 * 119.96946 * 0.50430 * 25 24 23 27 27 F 1.35110 * 120.02080 * 179.76702 * 26 25 24 28 28 C 1.38449 * 119.95195 * 359.74802 * 26 25 24 29 29 C 1.38198 * 119.97316 * 359.97438 * 28 26 25 30 30 H 1.09005 * 109.46797 * 60.00406 * 1 2 3 31 31 H 1.08998 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47357 * 300.00178 * 1 2 3 33 33 H 1.09000 * 109.47049 * 59.99952 * 3 2 1 34 34 H 1.09001 * 109.47098 * 300.00071 * 3 2 1 35 35 H 1.00893 * 111.00025 * 208.95437 * 6 4 3 36 36 H 1.08992 * 109.47114 * 60.00328 * 7 6 4 37 37 H 1.09000 * 109.47352 * 300.00014 * 7 6 4 38 38 H 0.96699 * 114.00248 * 300.00059 * 10 8 7 39 39 H 1.08996 * 109.47379 * 60.50805 * 11 8 7 40 40 H 1.09001 * 109.47526 * 300.50161 * 11 8 7 41 41 H 1.08996 * 109.46746 * 54.46120 * 13 12 11 42 42 H 1.08999 * 109.46872 * 174.46467 * 13 12 11 43 43 H 1.08997 * 109.46723 * 294.46666 * 13 12 11 44 44 H 1.08997 * 109.47134 * 310.00188 * 14 12 11 45 45 H 1.09002 * 109.47069 * 69.99767 * 14 12 11 46 46 H 0.97005 * 119.99921 * 179.97438 * 18 17 15 47 47 H 1.08004 * 119.98804 * 0.02562 * 24 23 4 48 48 H 1.08001 * 120.01632 * 180.25616 * 25 24 23 49 49 H 1.08004 * 120.01582 * 179.97438 * 28 26 25 50 50 H 1.08005 * 119.98329 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9779 0.5623 -1.2542 7 6 4.1208 1.5656 -2.3177 8 6 4.5813 0.8809 -3.6062 9 1 3.8436 0.1365 -3.9057 10 8 5.8395 0.2416 -3.3823 11 6 4.7295 1.9258 -4.7139 12 7 5.1601 1.2668 -5.9542 13 6 5.7582 2.2341 -6.8842 14 6 4.0431 0.5512 -6.5853 15 6 4.5666 -0.3072 -7.7079 16 1 5.6233 -0.3202 -7.9300 17 6 3.6963 -1.0759 -8.4513 18 7 2.4095 -1.0605 -8.1804 19 14 4.3452 -2.1404 -9.8424 20 1 5.8183 -1.9813 -9.9416 21 1 4.0178 -3.5633 -9.5712 22 1 3.7154 -1.7225 -11.1207 23 6 3.9714 0.3328 1.1649 24 6 3.8912 -1.0447 1.0810 25 6 4.2952 -1.8271 2.1462 26 6 4.7705 -1.2303 3.3016 27 9 5.1613 -1.9941 4.3454 28 6 4.8454 0.1496 3.3865 29 6 4.4462 0.9297 2.3178 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 4.8378 0.0516 -1.1210 36 1 4.8581 2.3102 -2.0179 37 1 3.1609 2.0530 -2.4887 38 1 6.5449 0.8452 -3.1121 39 1 5.4735 2.6656 -4.4185 40 1 3.7717 2.4194 -4.8784 41 1 6.5641 2.7696 -6.3826 42 1 6.1565 1.7064 -7.7507 43 1 4.9974 2.9438 -7.2090 44 1 3.5509 -0.0794 -5.8448 45 1 3.3278 1.2717 -6.9820 46 1 1.7971 -1.6010 -8.7037 47 1 3.5167 -1.5098 0.1811 48 1 4.2364 -2.9034 2.0789 49 1 5.2156 0.6162 4.2874 50 1 4.5050 2.0061 2.3837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:38 Heat of formation + Delta-G solvation = -104.761268 kcal Electronic energy + Delta-G solvation = -29804.143266 eV Core-core repulsion = 25553.177913 eV Total energy + Delta-G solvation = -4250.965353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.06996 -39.87796 -38.20082 -37.67962 -35.97612 -34.99674 -32.45813 -31.73544 -31.30397 -29.37892 -28.48444 -27.25987 -26.24822 -25.40832 -23.68180 -23.29959 -22.80238 -21.40096 -20.71989 -19.99014 -17.89660 -17.06587 -16.90372 -16.44279 -16.12622 -15.94014 -15.82794 -15.62824 -15.38041 -15.14551 -14.74898 -14.54419 -14.31633 -14.13694 -13.87550 -13.66926 -13.45376 -13.34114 -13.10934 -12.90787 -12.52537 -12.34435 -12.13696 -11.94464 -11.74907 -11.64741 -11.38858 -11.16810 -11.11597 -11.03683 -10.90907 -10.66413 -10.59557 -10.34307 -9.73774 -9.69764 -9.60898 -9.27128 -9.09300 -8.76579 -8.46787 -8.38498 -7.18298 -5.98110 -3.98317 0.90914 1.07141 3.34610 3.35875 3.41941 3.47146 3.68795 3.93674 4.06604 4.38879 4.46840 4.55802 4.69264 4.74658 4.86693 5.00555 5.04981 5.11177 5.19203 5.26984 5.29512 5.32006 5.33988 5.36827 5.41949 5.43669 5.59297 5.63504 5.71780 5.72477 5.80339 5.83459 5.91632 6.04620 6.09874 6.12343 6.32547 6.34750 6.55834 6.70324 6.72547 6.89058 7.16432 7.31242 7.34344 7.35627 7.84135 8.08730 8.14570 8.24236 8.59346 9.09085 9.65431 11.13042 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.002272 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.876826 B =12320.650196 C =12422.539075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.077 3.923 4 C 0.131 3.869 5 H 0.065 0.935 6 N -0.667 5.667 7 C 0.029 3.971 8 C 0.118 3.882 9 H 0.112 0.888 10 O -0.539 6.539 11 C 0.026 3.974 12 N -0.531 5.531 13 C 0.040 3.960 14 C 0.192 3.808 15 C -0.503 4.503 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.286 1.286 23 C -0.098 4.098 24 C -0.044 4.044 25 C -0.158 4.158 26 C 0.095 3.905 27 F -0.144 7.144 28 C -0.161 4.161 29 C -0.088 4.088 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.353 0.647 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.358 0.642 39 H 0.057 0.943 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.009 0.991 44 H 0.032 0.968 45 H -0.012 1.012 46 H 0.260 0.740 47 H 0.149 0.851 48 H 0.135 0.865 49 H 0.132 0.868 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 7.730 23.376 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.001 4.001 4 C 0.021 3.979 5 H 0.082 0.918 6 N -0.300 5.300 7 C -0.101 4.101 8 C 0.058 3.942 9 H 0.129 0.871 10 O -0.342 6.342 11 C -0.104 4.104 12 N -0.255 5.255 13 C -0.108 4.108 14 C 0.067 3.933 15 C -0.541 4.541 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.098 4.098 24 C -0.062 4.062 25 C -0.177 4.177 26 C 0.076 3.924 27 F -0.123 7.123 28 C -0.180 4.180 29 C -0.106 4.106 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.174 0.826 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.203 0.797 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.028 0.972 44 H 0.050 0.950 45 H 0.006 0.994 46 H 0.069 0.931 47 H 0.166 0.834 48 H 0.153 0.847 49 H 0.150 0.850 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.206 6.387 23.097 23.965 hybrid contribution 0.370 1.187 -0.337 1.288 sum 0.576 7.574 22.760 23.995 Atomic orbital electron populations 1.22714 0.81693 1.02689 0.99458 1.87978 1.18766 1.26620 1.95183 1.22490 0.92401 0.85603 0.99619 1.20492 0.94075 0.95468 0.87836 0.91759 1.60366 1.38815 1.26455 1.04376 1.22763 1.00846 0.93412 0.93110 1.21952 0.86503 0.95535 0.90234 0.87069 1.86714 1.19364 1.37401 1.90696 1.22668 0.98678 0.95540 0.93481 1.62038 1.33955 1.25594 1.03900 1.22198 0.97244 0.94207 0.97174 1.19786 0.86818 0.92591 0.94057 1.21183 0.94163 1.24663 1.14113 0.91877 1.24984 0.94825 0.97081 0.97814 1.69965 1.02146 1.41130 1.40690 0.86457 0.79063 0.80273 0.81718 1.19684 1.20986 1.21235 1.19833 1.00290 0.94500 0.95227 1.21058 0.94179 0.92715 0.98290 1.21254 1.02258 1.01316 0.92848 1.17792 1.00415 0.89001 0.85177 1.91492 1.88753 1.75701 1.56305 1.21012 1.04506 0.91869 1.00604 1.20860 0.97722 0.99790 0.92243 0.94098 0.89727 0.94797 0.93575 0.92862 0.82611 0.95321 0.90439 0.79711 0.92414 0.95009 0.93966 0.90798 0.97216 0.94963 0.99442 0.93059 0.83371 0.84737 0.85039 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.37 -4.28 9.06 -35.23 -0.32 -4.60 16 3 C 0.08 0.75 5.68 37.16 0.21 0.96 16 4 C 0.13 1.24 2.65 -68.86 -0.18 1.06 16 5 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 6 N -0.67 -7.67 5.65 -107.95 -0.61 -8.28 16 7 C 0.03 0.34 5.19 -3.82 -0.02 0.32 16 8 C 0.12 1.85 3.30 -26.73 -0.09 1.76 16 9 H 0.11 2.18 6.78 -51.93 -0.35 1.83 16 10 O -0.54 -8.63 12.55 -35.23 -0.44 -9.07 16 11 C 0.03 0.44 4.66 -3.82 -0.02 0.42 16 12 N -0.53 -11.39 4.56 -244.36 -1.11 -12.50 16 13 C 0.04 0.78 9.31 60.07 0.56 1.34 16 14 C 0.19 5.05 4.55 -4.97 -0.02 5.03 16 15 C -0.50 -14.36 8.54 -34.44 -0.29 -14.66 16 16 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 19 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.10 -0.94 4.59 -104.62 -0.48 -1.42 16 24 C -0.04 -0.47 8.00 -39.59 -0.32 -0.79 16 25 C -0.16 -1.62 10.03 -39.51 -0.40 -2.02 16 26 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 27 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 28 C -0.16 -1.42 10.03 -39.52 -0.40 -1.82 16 29 C -0.09 -0.73 9.67 -39.60 -0.38 -1.11 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 35 H 0.35 4.18 7.39 -39.30 -0.29 3.89 16 36 H 0.03 0.28 8.05 -51.93 -0.42 -0.13 16 37 H 0.08 0.90 7.36 -51.93 -0.38 0.52 16 38 H 0.36 4.28 9.05 45.56 0.41 4.69 16 39 H 0.06 0.82 7.80 -51.93 -0.41 0.41 16 40 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 41 H 0.04 0.68 7.94 -51.93 -0.41 0.27 16 42 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 43 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 44 H 0.03 0.91 6.63 -51.93 -0.34 0.56 16 45 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.15 1.74 7.46 -52.48 -0.39 1.35 16 48 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 49 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 50 H 0.13 0.77 8.04 -52.48 -0.42 0.35 16 LS Contribution 409.93 15.07 6.18 6.18 Total: -1.00 -32.49 409.93 -9.10 -41.59 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.45 Total: 4.90 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.10 Total: -7.37 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.99 Total: -47.07 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.76 Total: -13.68 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.49 -9.10 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.172 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds