Wall clock time and date at job start Sat Apr 11 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00051 * 2 1 4 4 C 1.52998 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47175 * 175.00012 * 4 3 2 6 6 N 1.46902 * 109.47190 * 295.00629 * 4 3 2 7 7 C 1.46904 * 110.99534 * 274.99858 * 6 4 3 8 8 C 1.53000 * 109.47085 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.47253 * 305.00344 * 8 7 6 10 10 O 1.42900 * 109.47194 * 64.99751 * 8 7 6 11 11 C 1.52998 * 109.47107 * 184.99848 * 8 7 6 12 12 N 1.46899 * 109.46858 * 175.04575 * 11 8 7 13 13 C 1.46903 * 110.99991 * 163.94840 * 12 11 8 14 14 C 1.46902 * 111.00138 * 287.89426 * 12 11 8 15 15 C 1.50702 * 109.47206 * 170.00004 * 14 12 11 16 16 H 1.07990 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 12 18 18 N 1.31519 * 119.99568 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00409 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47442 * 89.99373 * 19 17 15 21 21 H 1.48498 * 109.47152 * 209.99930 * 19 17 15 22 22 H 1.48506 * 109.46689 * 329.99562 * 19 17 15 23 23 C 1.50702 * 109.46798 * 54.99896 * 4 3 2 24 24 C 1.38244 * 119.97902 * 279.72425 * 23 4 3 25 25 C 1.38199 * 120.02687 * 179.72375 * 24 23 4 26 26 C 1.38456 * 119.97223 * 0.53197 * 25 24 23 27 27 F 1.35102 * 120.02742 * 179.72231 * 26 25 24 28 28 C 1.38466 * 119.95179 * 359.74456 * 26 25 24 29 29 C 1.38194 * 119.96908 * 0.02562 * 28 26 25 30 30 H 1.08995 * 109.47624 * 299.99750 * 1 2 3 31 31 H 1.08998 * 109.47177 * 60.00195 * 1 2 3 32 32 H 1.09002 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46868 * 59.99890 * 3 2 1 34 34 H 1.08994 * 109.46833 * 300.00199 * 3 2 1 35 35 H 1.00898 * 111.00033 * 38.94697 * 6 4 3 36 36 H 1.08996 * 109.47355 * 59.99871 * 7 6 4 37 37 H 1.09001 * 109.46826 * 299.99768 * 7 6 4 38 38 H 0.96698 * 114.00266 * 60.00042 * 10 8 7 39 39 H 1.08997 * 109.47560 * 55.04389 * 11 8 7 40 40 H 1.08998 * 109.46907 * 295.04026 * 11 8 7 41 41 H 1.08998 * 109.47439 * 189.27288 * 13 12 11 42 42 H 1.08994 * 109.47470 * 69.26701 * 13 12 11 43 43 H 1.09004 * 109.46549 * 309.26905 * 13 12 11 44 44 H 1.08997 * 109.47475 * 290.00611 * 14 12 11 45 45 H 1.09000 * 109.46537 * 50.00068 * 14 12 11 46 46 H 0.97003 * 119.99757 * 180.02562 * 18 17 15 47 47 H 1.08001 * 119.98230 * 359.97438 * 24 23 4 48 48 H 1.07997 * 120.01477 * 180.29350 * 25 24 23 49 49 H 1.07999 * 120.01346 * 179.97438 * 28 26 25 50 50 H 1.08006 * 119.98487 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 7 3.9769 0.5626 1.2561 7 6 4.1189 1.5663 2.3194 8 6 4.5796 0.8824 3.6081 9 1 3.8886 0.0777 3.8594 10 8 5.8896 0.3435 3.4194 11 6 4.6077 1.9046 4.7461 12 7 4.9348 1.2251 6.0067 13 6 5.3429 2.1914 7.0351 14 6 3.8070 0.4066 6.4716 15 6 4.2552 -0.4601 7.6202 16 1 5.2755 -0.4077 7.9700 17 6 3.3621 -1.3190 8.2249 18 7 3.7534 -2.0758 9.2270 19 14 1.5970 -1.4091 7.6202 20 1 1.4895 -2.4419 6.5586 21 1 0.7039 -1.7669 8.7514 22 1 1.1945 -0.0898 7.0699 23 6 3.9723 0.3324 -1.1629 24 6 3.9028 -1.0455 -1.0744 25 6 4.2977 -1.8279 -2.1429 26 6 4.7735 -1.2315 -3.2983 27 9 5.1652 -1.9955 -4.3415 28 6 4.8481 0.1485 -3.3838 29 6 4.4481 0.9289 -2.3157 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.3465 -0.1738 1.5360 36 1 3.1590 2.0538 2.4894 37 1 4.8565 2.3109 2.0199 38 1 6.5579 1.0046 3.1926 39 1 3.6303 2.3795 4.8322 40 1 5.3624 2.6623 4.5353 41 1 5.7352 1.6572 7.9005 42 1 4.4814 2.7875 7.3360 43 1 6.1151 2.8466 6.6319 44 1 2.9974 1.0574 6.8018 45 1 3.4557 -0.2248 5.6555 46 1 3.1252 -2.6803 9.6522 47 1 3.5359 -1.5105 -0.1713 48 1 4.2389 -2.9041 -2.0753 49 1 5.2195 0.6147 -4.2844 50 1 4.5058 2.0053 -2.3823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859724.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:41 Heat of formation + Delta-G solvation = -100.398937 kcal Electronic energy + Delta-G solvation = -29969.818488 eV Core-core repulsion = 25719.042300 eV Total energy + Delta-G solvation = -4250.776188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.02419 -39.92923 -38.32001 -37.91634 -36.08963 -35.09832 -32.43300 -31.81220 -31.26713 -29.49155 -28.52323 -27.90933 -26.47550 -25.42442 -23.64142 -23.34445 -22.77194 -21.59288 -20.83665 -19.94331 -17.87678 -17.19343 -16.87409 -16.59293 -16.51193 -16.16821 -15.89129 -15.67642 -15.47188 -15.39543 -14.69813 -14.56292 -14.46334 -14.25227 -13.80724 -13.65912 -13.58506 -13.27913 -13.08154 -12.90287 -12.79032 -12.60904 -12.35827 -12.06561 -11.88273 -11.78970 -11.55899 -11.42334 -11.28298 -11.10610 -11.09945 -10.78520 -10.51470 -10.20043 -10.03740 -9.89433 -9.57928 -9.22566 -9.20830 -8.73598 -8.55059 -8.50110 -7.34343 -6.03205 -3.99817 0.98410 1.12669 3.26692 3.27578 3.34302 3.34692 3.51803 3.92121 4.11639 4.39754 4.42166 4.55246 4.64256 4.68485 4.74257 4.79728 4.94140 4.98964 5.03340 5.08656 5.12441 5.16876 5.18156 5.26650 5.33109 5.36643 5.40544 5.49084 5.57613 5.61510 5.74585 5.86829 5.89233 5.96476 6.00975 6.14083 6.23961 6.34133 6.37656 6.64526 6.70680 6.73632 6.82813 6.90759 6.96536 7.22233 7.60205 7.87895 8.03468 8.17934 8.67928 9.06556 9.58341 11.10210 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.002547 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.066678 B =10992.457879 C =11481.058029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.031 3.969 4 C 0.131 3.869 5 H 0.099 0.901 6 N -0.667 5.667 7 C 0.026 3.974 8 C 0.117 3.883 9 H 0.099 0.901 10 O -0.529 6.529 11 C 0.023 3.977 12 N -0.521 5.521 13 C 0.040 3.960 14 C 0.162 3.838 15 C -0.505 4.505 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.270 1.270 23 C -0.073 4.073 24 C -0.042 4.042 25 C -0.157 4.157 26 C 0.092 3.908 27 F -0.145 7.145 28 C -0.160 4.160 29 C -0.090 4.090 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.354 0.646 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.362 0.638 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.011 0.989 43 H 0.045 0.955 44 H -0.015 1.015 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.136 0.864 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 10.254 -25.221 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.048 4.048 4 C 0.021 3.979 5 H 0.117 0.883 6 N -0.299 5.299 7 C -0.103 4.103 8 C 0.057 3.943 9 H 0.117 0.883 10 O -0.332 6.332 11 C -0.106 4.106 12 N -0.245 5.245 13 C -0.108 4.108 14 C 0.036 3.964 15 C -0.543 4.543 16 H 0.099 0.901 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.074 4.074 24 C -0.060 4.060 25 C -0.176 4.176 26 C 0.072 3.928 27 F -0.124 7.124 28 C -0.178 4.178 29 C -0.109 4.109 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.174 0.826 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.207 0.793 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.064 0.936 44 H 0.003 0.997 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.154 0.846 48 H 0.151 0.849 49 H 0.149 0.851 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.822 9.048 -25.213 26.936 hybrid contribution -2.639 1.295 -0.200 2.947 sum -5.462 10.343 -25.413 27.975 Atomic orbital electron populations 1.22749 0.80804 1.03028 0.99841 1.87878 1.19787 1.26990 1.95341 1.23275 0.95126 0.85667 1.00696 1.20570 0.90399 0.97440 0.89497 0.88305 1.60430 1.54785 1.12554 1.02109 1.22797 1.00059 0.94732 0.92756 1.21859 0.86308 0.96199 0.89950 0.88347 1.86710 1.17106 1.37012 1.92350 1.22753 0.99028 0.95872 0.92988 1.61860 1.39126 1.21645 1.01860 1.22220 0.98037 0.94215 0.96328 1.20234 0.87656 0.92475 0.96064 1.21018 0.99206 1.20557 1.13560 0.90098 1.24901 0.98276 0.95324 0.94874 1.69895 1.35305 1.25363 1.23391 0.86894 0.85633 0.78668 0.78745 1.20025 1.21211 1.19518 1.19622 0.99287 0.94201 0.94270 1.20822 0.94928 0.92821 0.97475 1.21191 1.02435 1.01156 0.92840 1.17748 1.00783 0.88998 0.85236 1.91483 1.88785 1.75712 1.56383 1.20995 1.04405 0.91846 1.00596 1.20800 0.98048 0.99716 0.92308 0.94049 0.94207 0.89381 0.92853 0.92755 0.82564 0.94726 0.90676 0.79268 0.95408 0.91596 0.90350 0.97010 0.93581 0.99733 0.95837 0.92700 0.84612 0.84937 0.85120 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.70 8.52 -35.23 -0.30 -4.00 16 3 C 0.03 0.25 5.60 37.16 0.21 0.46 16 4 C 0.13 1.15 2.65 -68.86 -0.18 0.96 16 5 H 0.10 0.72 7.66 -51.93 -0.40 0.32 16 6 N -0.67 -7.25 5.64 -107.95 -0.61 -7.86 16 7 C 0.03 0.28 5.12 -3.82 -0.02 0.27 16 8 C 0.12 1.74 3.20 -26.73 -0.09 1.65 16 9 H 0.10 1.73 6.46 -51.93 -0.34 1.39 16 10 O -0.53 -8.59 13.23 -35.23 -0.47 -9.06 16 11 C 0.02 0.37 4.61 -3.83 -0.02 0.35 16 12 N -0.52 -10.77 4.66 -244.37 -1.14 -11.91 16 13 C 0.04 0.76 9.32 60.07 0.56 1.32 16 14 C 0.16 3.92 3.64 -4.97 -0.02 3.90 16 15 C -0.51 -14.51 9.14 -34.44 -0.31 -14.82 16 16 H 0.08 2.54 7.34 -52.49 -0.39 2.16 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 19 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 C -0.07 -0.70 4.83 -104.62 -0.51 -1.21 16 24 C -0.04 -0.45 8.32 -39.59 -0.33 -0.78 16 25 C -0.16 -1.67 10.03 -39.52 -0.40 -2.06 16 26 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16 27 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 28 C -0.16 -1.46 10.03 -39.51 -0.40 -1.86 16 29 C -0.09 -0.77 9.67 -39.59 -0.38 -1.15 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.35 4.24 7.28 -39.29 -0.29 3.95 16 36 H 0.03 0.35 7.36 -51.93 -0.38 -0.03 16 37 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 38 H 0.36 4.48 9.05 45.56 0.41 4.89 16 39 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 40 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 41 H 0.08 1.65 7.02 -51.93 -0.36 1.28 16 42 H 0.01 0.21 8.07 -51.93 -0.42 -0.21 16 43 H 0.05 0.72 7.88 -51.93 -0.41 0.31 16 44 H -0.01 -0.37 7.13 -51.93 -0.37 -0.74 16 45 H 0.02 0.57 5.77 -51.93 -0.30 0.27 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.14 1.51 7.01 -52.49 -0.37 1.14 16 48 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 49 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 50 H 0.13 0.76 8.04 -52.48 -0.42 0.34 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -33.27 405.75 -8.76 -42.04 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.35 Total: 5.56 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.15 Total: -9.04 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.97 Total: -46.82 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.77 Total: -13.06 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.27 -8.76 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859724.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.364 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds