Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00051 * 2 1 4 4 C 1.52998 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47175 * 175.00012 * 4 3 2 6 6 N 1.46902 * 109.47190 * 295.00629 * 4 3 2 7 7 C 1.46904 * 110.99534 * 274.99858 * 6 4 3 8 8 C 1.53000 * 109.47085 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.47253 * 305.00344 * 8 7 6 10 10 O 1.42900 * 109.47194 * 64.99751 * 8 7 6 11 11 C 1.52998 * 109.47107 * 184.99848 * 8 7 6 12 12 N 1.46899 * 109.46858 * 175.04575 * 11 8 7 13 13 C 1.46903 * 110.99991 * 163.94840 * 12 11 8 14 14 C 1.46902 * 111.00138 * 287.89426 * 12 11 8 15 15 C 1.50702 * 109.47206 * 170.00004 * 14 12 11 16 16 H 1.07990 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 12 18 18 N 1.31519 * 119.99568 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00409 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47442 * 89.99373 * 19 17 15 21 21 H 1.48498 * 109.47152 * 209.99930 * 19 17 15 22 22 H 1.48506 * 109.46689 * 329.99562 * 19 17 15 23 23 C 1.50702 * 109.46798 * 54.99896 * 4 3 2 24 24 C 1.38244 * 119.97902 * 279.72425 * 23 4 3 25 25 C 1.38199 * 120.02687 * 179.72375 * 24 23 4 26 26 C 1.38456 * 119.97223 * 0.53197 * 25 24 23 27 27 F 1.35102 * 120.02742 * 179.72231 * 26 25 24 28 28 C 1.38466 * 119.95179 * 359.74456 * 26 25 24 29 29 C 1.38194 * 119.96908 * 0.02562 * 28 26 25 30 30 H 1.08995 * 109.47624 * 299.99750 * 1 2 3 31 31 H 1.08998 * 109.47177 * 60.00195 * 1 2 3 32 32 H 1.09002 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46868 * 59.99890 * 3 2 1 34 34 H 1.08994 * 109.46833 * 300.00199 * 3 2 1 35 35 H 1.00898 * 111.00033 * 38.94697 * 6 4 3 36 36 H 1.08996 * 109.47355 * 59.99871 * 7 6 4 37 37 H 1.09001 * 109.46826 * 299.99768 * 7 6 4 38 38 H 0.96698 * 114.00266 * 60.00042 * 10 8 7 39 39 H 1.08997 * 109.47560 * 55.04389 * 11 8 7 40 40 H 1.08998 * 109.46907 * 295.04026 * 11 8 7 41 41 H 1.08998 * 109.47439 * 189.27288 * 13 12 11 42 42 H 1.08994 * 109.47470 * 69.26701 * 13 12 11 43 43 H 1.09004 * 109.46549 * 309.26905 * 13 12 11 44 44 H 1.08997 * 109.47475 * 290.00611 * 14 12 11 45 45 H 1.09000 * 109.46537 * 50.00068 * 14 12 11 46 46 H 0.97003 * 119.99757 * 180.02562 * 18 17 15 47 47 H 1.08001 * 119.98230 * 359.97438 * 24 23 4 48 48 H 1.07997 * 120.01477 * 180.29350 * 25 24 23 49 49 H 1.07999 * 120.01346 * 179.97438 * 28 26 25 50 50 H 1.08006 * 119.98487 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 7 3.9769 0.5626 1.2561 7 6 4.1189 1.5663 2.3194 8 6 4.5796 0.8824 3.6081 9 1 3.8886 0.0777 3.8594 10 8 5.8896 0.3435 3.4194 11 6 4.6077 1.9046 4.7461 12 7 4.9348 1.2251 6.0067 13 6 5.3429 2.1914 7.0351 14 6 3.8070 0.4066 6.4716 15 6 4.2552 -0.4601 7.6202 16 1 5.2755 -0.4077 7.9700 17 6 3.3621 -1.3190 8.2249 18 7 3.7534 -2.0758 9.2270 19 14 1.5970 -1.4091 7.6202 20 1 1.4895 -2.4419 6.5586 21 1 0.7039 -1.7669 8.7514 22 1 1.1945 -0.0898 7.0699 23 6 3.9723 0.3324 -1.1629 24 6 3.9028 -1.0455 -1.0744 25 6 4.2977 -1.8279 -2.1429 26 6 4.7735 -1.2315 -3.2983 27 9 5.1652 -1.9955 -4.3415 28 6 4.8481 0.1485 -3.3838 29 6 4.4481 0.9289 -2.3157 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.3465 -0.1738 1.5360 36 1 3.1590 2.0538 2.4894 37 1 4.8565 2.3109 2.0199 38 1 6.5579 1.0046 3.1926 39 1 3.6303 2.3795 4.8322 40 1 5.3624 2.6623 4.5353 41 1 5.7352 1.6572 7.9005 42 1 4.4814 2.7875 7.3360 43 1 6.1151 2.8466 6.6319 44 1 2.9974 1.0574 6.8018 45 1 3.4557 -0.2248 5.6555 46 1 3.1252 -2.6803 9.6522 47 1 3.5359 -1.5105 -0.1713 48 1 4.2389 -2.9041 -2.0753 49 1 5.2195 0.6147 -4.2844 50 1 4.5058 2.0053 -2.3823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578859724.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = -126.589661 kcal Electronic energy + Delta-G solvation = -29970.954203 eV Core-core repulsion = 25719.042300 eV Total energy + Delta-G solvation = -4251.911903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.84773 -40.63889 -39.43672 -38.70530 -37.33254 -36.12899 -34.58568 -32.68175 -31.99075 -30.68773 -29.86915 -29.13876 -27.21070 -26.53053 -25.01351 -24.15292 -23.76629 -22.71156 -21.76623 -21.33725 -19.05438 -18.64011 -17.93021 -17.41939 -17.28185 -16.89131 -16.81961 -16.70464 -16.52719 -16.29563 -16.21091 -15.91779 -15.48827 -15.29279 -15.04041 -14.70905 -14.45163 -14.36345 -14.30755 -14.15372 -13.90159 -13.56708 -13.34956 -13.24822 -13.03758 -12.79628 -12.62833 -12.51911 -12.46027 -12.36508 -12.25204 -12.03461 -11.86695 -11.81079 -11.64832 -11.41833 -10.77562 -10.68276 -10.61824 -9.94569 -9.48971 -9.25868 -8.93021 -8.28174 -6.31000 0.24034 0.40900 1.31748 1.34287 1.43728 2.33292 2.58608 2.86078 3.01661 3.06161 3.37356 3.45084 3.74725 3.79262 3.87630 3.97691 4.02527 4.08388 4.24423 4.33232 4.36387 4.40266 4.42944 4.46438 4.51040 4.53677 4.57338 4.62400 4.65563 4.68757 4.72866 4.80673 4.85563 4.90390 5.01323 5.06870 5.14053 5.20231 5.24521 5.25491 5.39384 5.55869 5.63300 5.98086 6.01329 6.06948 6.26084 6.34991 6.40721 6.68490 6.75629 7.18514 7.32135 8.88906 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.002547 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.066678 B =10992.457879 C =11481.058029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.403 6.403 3 C 0.031 3.969 4 C 0.135 3.865 5 H 0.123 0.877 6 N -0.680 5.680 7 C 0.041 3.959 8 C 0.120 3.880 9 H 0.063 0.937 10 O -0.556 6.556 11 C 0.025 3.975 12 N -0.544 5.544 13 C 0.044 3.956 14 C 0.174 3.826 15 C -0.515 4.515 16 H 0.035 0.965 17 C 0.004 3.996 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.249 1.249 23 C -0.076 4.076 24 C -0.057 4.057 25 C -0.171 4.171 26 C 0.070 3.930 27 F -0.154 7.154 28 C -0.158 4.158 29 C -0.085 4.085 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.344 0.656 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.378 0.622 39 H 0.039 0.961 40 H 0.099 0.901 41 H 0.041 0.959 42 H 0.017 0.983 43 H 0.084 0.916 44 H -0.014 1.014 45 H 0.025 0.975 46 H 0.266 0.734 47 H 0.124 0.876 48 H 0.133 0.867 49 H 0.151 0.849 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 13.249 -27.636 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C -0.047 4.047 4 C 0.025 3.975 5 H 0.141 0.859 6 N -0.311 5.311 7 C -0.089 4.089 8 C 0.060 3.940 9 H 0.081 0.919 10 O -0.362 6.362 11 C -0.104 4.104 12 N -0.268 5.268 13 C -0.104 4.104 14 C 0.047 3.953 15 C -0.553 4.553 16 H 0.053 0.947 17 C -0.192 4.192 18 N -0.591 5.591 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.173 1.173 23 C -0.077 4.077 24 C -0.075 4.075 25 C -0.189 4.189 26 C 0.051 3.949 27 F -0.133 7.133 28 C -0.177 4.177 29 C -0.103 4.103 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.226 0.774 39 H 0.057 0.943 40 H 0.117 0.883 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.102 0.898 44 H 0.003 0.997 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.142 0.858 48 H 0.151 0.849 49 H 0.169 0.831 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.997 12.080 -27.652 30.439 hybrid contribution -2.131 0.369 0.565 2.236 sum -6.129 12.449 -27.087 30.434 Atomic orbital electron populations 1.22833 0.80045 1.03357 1.00490 1.87865 1.20758 1.28124 1.95492 1.23324 0.94587 0.85222 1.01574 1.20661 0.90965 0.97994 0.87909 0.85890 1.60406 1.55031 1.12703 1.02938 1.22617 1.01172 0.94451 0.90621 1.21761 0.85281 0.95099 0.91871 0.91868 1.86665 1.18251 1.38669 1.92602 1.22875 1.00661 0.96422 0.90418 1.61717 1.37949 1.23173 1.03977 1.22176 0.99191 0.93878 0.95196 1.19939 0.88763 0.92389 0.94190 1.21290 0.97351 1.21556 1.15097 0.94716 1.25888 1.03659 0.94779 0.94914 1.70062 1.37328 1.26559 1.25119 0.85722 0.79069 0.79784 0.78419 1.19134 1.20607 1.17257 1.19831 0.98938 0.93766 0.95192 1.20814 0.95823 0.93764 0.97103 1.21281 1.02984 1.01459 0.93219 1.17997 1.01862 0.89892 0.85137 1.91454 1.89019 1.76112 1.56710 1.21300 1.03625 0.91111 1.01650 1.21143 0.96613 1.01298 0.91254 0.93829 0.93042 0.89368 0.92455 0.91241 0.83693 0.93458 0.88244 0.77388 0.94279 0.88293 0.93984 0.96442 0.89769 0.99652 0.95730 0.92487 0.85796 0.84922 0.83084 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -7.24 8.52 -148.98 -1.27 -8.51 16 3 C 0.03 0.42 5.60 71.98 0.40 0.82 16 4 C 0.13 1.93 2.65 44.17 0.12 2.04 16 5 H 0.12 1.18 7.66 -2.39 -0.02 1.16 16 6 N -0.68 -13.30 5.64 -495.45 -2.80 -16.10 16 7 C 0.04 0.74 5.12 86.30 0.44 1.19 16 8 C 0.12 3.32 3.20 30.59 0.10 3.42 16 9 H 0.06 2.20 6.46 -2.39 -0.02 2.18 16 10 O -0.56 -17.34 13.23 -148.98 -1.97 -19.31 16 11 C 0.02 0.71 4.61 86.30 0.40 1.11 16 12 N -0.54 -21.99 4.66 -927.06 -4.32 -26.31 16 13 C 0.04 1.61 9.32 127.69 1.19 2.80 16 14 C 0.17 8.41 3.64 85.56 0.31 8.72 16 15 C -0.51 -30.55 9.14 25.60 0.23 -30.31 16 16 H 0.03 2.31 7.34 -2.92 -0.02 2.29 16 17 C 0.00 0.27 5.47 84.65 0.46 0.73 16 18 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 19 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 23 C -0.08 -1.31 4.83 -19.86 -0.10 -1.40 16 24 C -0.06 -1.19 8.32 22.26 0.19 -1.01 16 25 C -0.17 -3.66 10.03 22.31 0.22 -3.43 16 26 C 0.07 1.47 7.30 22.38 0.16 1.63 16 27 F -0.15 -3.51 17.27 44.97 0.78 -2.73 16 28 C -0.16 -2.54 10.03 22.31 0.22 -2.32 16 29 C -0.08 -1.17 9.67 22.26 0.22 -0.95 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.06 0.73 7.35 -2.39 -0.02 0.71 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.34 7.95 7.28 -89.70 -0.65 7.30 16 36 H 0.05 0.76 7.36 -2.39 -0.02 0.74 16 37 H 0.10 1.35 8.06 -2.39 -0.02 1.33 16 38 H 0.38 8.51 9.05 -74.06 -0.67 7.84 16 39 H 0.04 1.05 8.05 -2.39 -0.02 1.04 16 40 H 0.10 2.18 7.82 -2.39 -0.02 2.16 16 41 H 0.04 1.82 7.02 -2.39 -0.02 1.80 16 42 H 0.02 0.61 8.07 -2.39 -0.02 0.59 16 43 H 0.08 2.42 7.88 -2.39 -0.02 2.40 16 44 H -0.01 -0.67 7.13 -2.39 -0.02 -0.69 16 45 H 0.02 1.19 5.77 -2.39 -0.01 1.17 16 46 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.12 2.84 7.01 -2.91 -0.02 2.82 16 48 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 49 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 50 H 0.16 1.11 8.04 -2.91 -0.02 1.09 16 Total: -1.00 -75.64 405.75 -2.00 -77.64 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.43 Total: 24.60 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.82 Total: -15.32 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -6.81 Total: -102.81 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -3.24 Total: -27.82 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -75.64 -2.00 -77.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859724.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.949 kcal (2) G-P(sol) polarization free energy of solvation -75.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds