Wall clock time and date at job start Sat Apr 11 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99948 * 2 1 4 4 C 1.52994 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47103 * 174.99702 * 4 3 2 6 6 N 1.46898 * 109.47074 * 294.99887 * 4 3 2 7 7 C 1.46901 * 111.00261 * 275.00070 * 6 4 3 8 8 C 1.53004 * 109.47344 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.46950 * 59.99808 * 8 7 6 10 10 O 1.42898 * 109.46888 * 299.99796 * 8 7 6 11 11 C 1.52997 * 109.46830 * 179.97438 * 8 7 6 12 12 N 1.46903 * 109.46695 * 180.46046 * 11 8 7 13 13 C 1.46899 * 110.99804 * 199.85059 * 12 11 8 14 14 C 1.46903 * 110.99902 * 75.89859 * 12 11 8 15 15 C 1.50701 * 109.46966 * 189.99658 * 14 12 11 16 16 H 1.07998 * 120.00118 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99884 * 179.97438 * 15 14 12 18 18 N 1.31521 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00216 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46908 * 60.00242 * 19 17 15 21 21 H 1.48500 * 109.46979 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46795 * 300.00226 * 19 17 15 23 23 C 1.50697 * 109.46997 * 54.99686 * 4 3 2 24 24 C 1.38250 * 119.97323 * 100.00137 * 23 4 3 25 25 C 1.38196 * 120.02709 * 179.97438 * 24 23 4 26 26 C 1.38463 * 119.97241 * 359.97438 * 25 24 23 27 27 F 1.35106 * 120.02421 * 179.97438 * 26 25 24 28 28 C 1.38461 * 119.94887 * 0.25577 * 26 25 24 29 29 C 1.38194 * 119.97352 * 359.50988 * 28 26 25 30 30 H 1.08999 * 109.47602 * 300.00217 * 1 2 3 31 31 H 1.09004 * 109.47338 * 60.00239 * 1 2 3 32 32 H 1.09005 * 109.46963 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47162 * 59.99721 * 3 2 1 34 34 H 1.09001 * 109.46926 * 299.99807 * 3 2 1 35 35 H 1.00897 * 111.00165 * 38.95702 * 6 4 3 36 36 H 1.08997 * 109.46717 * 300.00094 * 7 6 4 37 37 H 1.08998 * 109.46864 * 59.99999 * 7 6 4 38 38 H 0.96697 * 114.00202 * 300.00156 * 10 8 7 39 39 H 1.08998 * 109.47510 * 300.45758 * 11 8 7 40 40 H 1.08996 * 109.47395 * 60.46383 * 11 8 7 41 41 H 1.08999 * 109.47152 * 64.82552 * 13 12 11 42 42 H 1.09000 * 109.47335 * 184.82459 * 13 12 11 43 43 H 1.09002 * 109.47526 * 304.82368 * 13 12 11 44 44 H 1.08995 * 109.47046 * 310.00147 * 14 12 11 45 45 H 1.09004 * 109.46986 * 70.00089 * 14 12 11 46 46 H 0.97004 * 120.00051 * 179.97438 * 18 17 15 47 47 H 1.08003 * 119.98715 * 359.97438 * 24 23 4 48 48 H 1.07997 * 120.01506 * 180.02562 * 25 24 23 49 49 H 1.08003 * 120.01143 * 179.74205 * 28 26 25 50 50 H 1.08001 * 119.98983 * 180.25486 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 7 3.9768 0.5629 1.2562 7 6 4.1188 1.5666 2.3194 8 6 4.5795 0.8826 3.6082 9 1 5.5396 0.3955 3.4378 10 8 3.6129 -0.0938 4.0010 11 6 4.7279 1.9281 4.7153 12 7 5.1809 1.2731 5.9497 13 6 4.8923 2.1067 7.1244 14 6 6.6105 0.9432 5.8766 15 6 6.9830 0.0626 7.0414 16 1 6.2328 -0.2237 7.7636 17 6 8.2815 -0.3784 7.1847 18 7 9.1951 -0.0301 6.3050 19 14 8.7432 -1.4705 8.6281 20 1 7.9432 -2.7206 8.5787 21 1 10.1884 -1.8038 8.5542 22 1 8.4651 -0.7547 9.8992 23 6 3.9722 0.3324 -1.1628 24 6 4.4476 0.9289 -2.3159 25 6 4.8490 0.1484 -3.3833 26 6 4.7755 -1.2316 -3.2974 27 9 5.1672 -1.9957 -4.3405 28 6 4.2948 -1.8278 -2.1439 29 6 3.8985 -1.0453 -1.0760 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.3465 -0.1736 1.5360 36 1 4.8563 2.3111 2.0199 37 1 3.1588 2.0540 2.4894 38 1 2.7328 0.2696 4.1696 39 1 5.4594 2.6772 4.4121 40 1 3.7662 2.4099 4.8915 41 1 3.8134 2.2069 7.2427 42 1 5.3135 1.6389 8.0143 43 1 5.3360 3.0930 6.9879 44 1 6.8149 0.4177 4.9438 45 1 7.1975 1.8610 5.9127 46 1 10.1087 -0.3400 6.4060 47 1 4.5052 2.0054 -2.3825 48 1 5.2207 0.6145 -4.2838 49 1 4.2331 -2.9040 -2.0773 50 1 3.5273 -1.5101 -0.1745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:45 Heat of formation + Delta-G solvation = -106.486850 kcal Electronic energy + Delta-G solvation = -29811.150618 eV Core-core repulsion = 25560.110438 eV Total energy + Delta-G solvation = -4251.040180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.96903 -39.88028 -38.26812 -37.85342 -35.98429 -35.00927 -32.45320 -31.71960 -31.21066 -29.43550 -28.42591 -27.24927 -26.45337 -25.37436 -23.67871 -23.32220 -22.80869 -21.43291 -20.80720 -20.00111 -17.82610 -17.13453 -16.58871 -16.53696 -16.26064 -16.11392 -15.94231 -15.66326 -15.57688 -15.19190 -14.69134 -14.56879 -14.24330 -14.16700 -13.66840 -13.62832 -13.50919 -13.28321 -13.17650 -12.83469 -12.66185 -12.32575 -12.06130 -11.93349 -11.83287 -11.79516 -11.40905 -11.34846 -11.12948 -11.04207 -10.86697 -10.70389 -10.61158 -10.31985 -10.02446 -9.73277 -9.60742 -9.16749 -9.11275 -8.67478 -8.44295 -8.37511 -7.18305 -5.97315 -3.97927 1.04182 1.18462 3.30626 3.37641 3.41555 3.44988 3.56228 4.00768 4.17305 4.44890 4.47886 4.61418 4.70333 4.75665 4.79532 4.93620 4.97868 5.01289 5.06179 5.11783 5.13611 5.20358 5.33957 5.36704 5.38029 5.40035 5.42644 5.59407 5.71927 5.78739 5.80431 5.92602 6.02296 6.03837 6.13472 6.19288 6.32611 6.42089 6.55557 6.72582 6.74535 6.79687 6.97844 7.31796 7.35086 7.38358 7.83818 8.08639 8.14835 8.24657 8.59540 9.08782 9.65676 11.13704 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.002457 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.906608 B =11395.563219 C =12875.900647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.033 3.967 4 C 0.131 3.869 5 H 0.099 0.901 6 N -0.671 5.671 7 C 0.029 3.971 8 C 0.117 3.883 9 H 0.112 0.888 10 O -0.539 6.539 11 C 0.027 3.973 12 N -0.531 5.531 13 C 0.038 3.962 14 C 0.193 3.807 15 C -0.505 4.505 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.074 4.074 24 C -0.090 4.090 25 C -0.159 4.159 26 C 0.091 3.909 27 F -0.145 7.145 28 C -0.158 4.158 29 C -0.043 4.043 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.359 0.641 36 H 0.079 0.921 37 H 0.027 0.973 38 H 0.358 0.642 39 H 0.033 0.967 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.007 0.993 44 H 0.032 0.968 45 H -0.012 1.012 46 H 0.261 0.739 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.239 5.190 -18.300 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.046 4.046 4 C 0.020 3.980 5 H 0.117 0.883 6 N -0.304 5.304 7 C -0.101 4.101 8 C 0.057 3.943 9 H 0.129 0.871 10 O -0.341 6.341 11 C -0.103 4.103 12 N -0.255 5.255 13 C -0.111 4.111 14 C 0.068 3.932 15 C -0.544 4.544 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.075 4.075 24 C -0.108 4.108 25 C -0.178 4.178 26 C 0.072 3.928 27 F -0.124 7.124 28 C -0.177 4.177 29 C -0.061 4.061 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.181 0.819 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.202 0.798 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.025 0.975 44 H 0.050 0.950 45 H 0.006 0.994 46 H 0.071 0.929 47 H 0.146 0.854 48 H 0.149 0.851 49 H 0.150 0.850 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.984 4.131 -18.541 24.826 hybrid contribution -0.645 1.020 0.648 1.370 sum -16.629 5.151 -17.893 24.964 Atomic orbital electron populations 1.22735 0.80974 1.02911 0.99755 1.87894 1.19624 1.27020 1.95318 1.23262 0.95161 0.85563 1.00577 1.20573 0.90349 0.97512 0.89532 0.88299 1.60378 1.55201 1.12803 1.02011 1.22747 0.99709 0.94754 0.92922 1.21964 0.93688 0.89624 0.89033 0.87076 1.86717 1.21496 1.35542 1.90327 1.22657 0.99311 0.95287 0.93062 1.62031 1.22349 1.41361 0.99731 1.22224 0.98616 0.94500 0.95747 1.19769 0.80226 0.94990 0.98250 1.21105 0.94040 1.29881 1.09333 0.91973 1.24982 0.96469 0.96576 0.96600 1.69949 1.02564 1.45793 1.35597 0.86568 0.77175 0.81117 0.82587 1.20106 1.21395 1.20390 1.19636 0.99322 0.94226 0.94269 1.20814 0.97958 0.99766 0.92296 1.20998 1.04335 0.91849 1.00634 1.17749 1.00760 0.88998 0.85270 1.91482 1.88809 1.75705 1.56382 1.21185 1.02449 1.01124 0.92902 1.20823 0.95038 0.92815 0.97444 0.94143 0.94288 0.89457 0.92921 0.92833 0.81934 0.90251 0.95439 0.79778 0.94929 0.92464 0.93862 0.90455 0.97456 0.94972 0.99447 0.92919 0.85424 0.85113 0.84950 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.47 8.50 -35.23 -0.30 -3.77 16 3 C 0.03 0.26 5.60 37.15 0.21 0.47 16 4 C 0.13 1.22 2.65 -68.87 -0.18 1.04 16 5 H 0.10 0.81 7.66 -51.93 -0.40 0.41 16 6 N -0.67 -7.76 5.70 -107.96 -0.62 -8.38 16 7 C 0.03 0.33 5.19 -3.82 -0.02 0.31 16 8 C 0.12 1.84 3.30 -26.73 -0.09 1.75 16 9 H 0.11 2.18 6.78 -51.93 -0.35 1.83 16 10 O -0.54 -8.64 12.55 -35.23 -0.44 -9.08 16 11 C 0.03 0.45 4.66 -3.82 -0.02 0.43 16 12 N -0.53 -11.39 4.56 -244.37 -1.11 -12.50 16 13 C 0.04 0.73 9.37 60.06 0.56 1.29 16 14 C 0.19 5.06 4.55 -4.97 -0.02 5.04 16 15 C -0.50 -14.44 8.39 -34.44 -0.29 -14.73 16 16 H 0.06 1.76 7.17 -52.49 -0.38 1.39 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.07 -0.76 4.83 -104.62 -0.51 -1.27 16 24 C -0.09 -0.83 9.67 -39.59 -0.38 -1.22 16 25 C -0.16 -1.58 10.03 -39.51 -0.40 -1.97 16 26 C 0.09 1.04 7.30 -39.42 -0.29 0.75 16 27 F -0.15 -1.74 17.27 2.25 0.04 -1.71 16 28 C -0.16 -1.75 10.03 -39.52 -0.40 -2.15 16 29 C -0.04 -0.48 8.32 -39.59 -0.33 -0.81 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.39 7.35 -51.93 -0.38 0.01 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.36 4.36 6.68 -39.29 -0.26 4.10 16 36 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 37 H 0.03 0.27 7.36 -51.93 -0.38 -0.11 16 38 H 0.36 4.30 9.05 45.56 0.41 4.72 16 39 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 40 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.63 6.67 -51.93 -0.35 1.28 16 43 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 44 H 0.03 0.91 6.63 -51.93 -0.34 0.56 16 45 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.13 0.87 8.04 -52.48 -0.42 0.45 16 48 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 49 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 50 H 0.14 1.55 7.00 -52.49 -0.37 1.18 16 LS Contribution 408.81 15.07 6.16 6.16 Total: -1.00 -32.59 408.81 -9.09 -41.68 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.40 Total: 5.19 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.13 Total: -8.24 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.99 Total: -47.27 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.74 Total: -12.85 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.59 -9.09 -41.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.809 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds