Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47378 * 2 1 4 4 C 1.52994 * 109.47318 * 120.00358 * 2 1 3 5 5 N 1.46901 * 109.47246 * 184.99747 * 4 2 1 6 6 C 1.46901 * 111.00074 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46805 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47620 * 60.00018 * 7 6 5 9 9 O 1.42897 * 109.47195 * 299.99829 * 7 6 5 10 10 C 1.53003 * 109.47054 * 180.02562 * 7 6 5 11 11 N 1.46904 * 109.47418 * 184.99788 * 10 7 6 12 12 C 1.46904 * 110.99517 * 66.04284 * 11 10 7 13 13 C 1.46891 * 110.99887 * 189.99561 * 11 10 7 14 14 C 1.50704 * 109.46818 * 169.99992 * 13 11 10 15 15 H 1.07998 * 120.00137 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99933 * 180.02562 * 14 13 11 17 17 N 1.31514 * 119.99658 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99999 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47106 * 90.00079 * 18 16 14 20 20 H 1.48500 * 109.47309 * 210.00301 * 18 16 14 21 21 H 1.48500 * 109.47336 * 330.00143 * 18 16 14 22 22 O 1.42904 * 109.46813 * 240.00203 * 2 1 3 23 23 C 1.35958 * 117.00004 * 84.98281 * 22 2 1 24 24 C 1.38665 * 120.05996 * 354.51791 * 23 22 2 25 25 C 1.38184 * 119.96486 * 179.72131 * 24 23 22 26 26 C 1.38261 * 120.09818 * 0.54991 * 25 24 23 27 27 C 1.38256 * 120.12549 * 359.71833 * 26 25 24 28 28 C 1.38336 * 120.02623 * 0.02562 * 27 26 25 29 29 F 1.35098 * 120.04588 * 180.02562 * 28 27 26 30 30 H 1.09001 * 109.47085 * 299.99308 * 1 2 3 31 31 H 1.08995 * 109.47155 * 59.99724 * 1 2 3 32 32 H 1.09008 * 109.46962 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47495 * 64.99975 * 4 2 1 34 34 H 1.09001 * 109.47609 * 304.99875 * 4 2 1 35 35 H 1.00901 * 110.99891 * 303.95582 * 5 4 2 36 36 H 1.08996 * 109.47266 * 60.00463 * 6 5 4 37 37 H 1.08999 * 109.46871 * 299.99602 * 6 5 4 38 38 H 0.96710 * 113.99860 * 300.00220 * 9 7 6 39 39 H 1.08996 * 109.47068 * 64.99750 * 10 7 6 40 40 H 1.09006 * 109.46936 * 304.99914 * 10 7 6 41 41 H 1.09004 * 109.46535 * 183.95688 * 12 11 10 42 42 H 1.09004 * 109.47092 * 63.95740 * 12 11 10 43 43 H 1.08995 * 109.47741 * 303.95289 * 12 11 10 44 44 H 1.08997 * 109.47905 * 290.00117 * 13 11 10 45 45 H 1.09002 * 109.47337 * 50.00154 * 13 11 10 46 46 H 0.97000 * 119.99458 * 179.97438 * 17 16 14 47 47 H 1.08001 * 120.01589 * 359.96550 * 24 23 22 48 48 H 1.08004 * 119.95082 * 180.26952 * 25 24 23 49 49 H 1.07999 * 119.93837 * 179.74653 * 26 25 24 50 50 H 1.08001 * 119.98841 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5041 -0.6177 1.3110 6 6 4.0304 -1.3000 2.5007 7 6 5.5546 -1.1701 2.5306 8 1 5.8288 -0.1158 2.5653 9 8 6.1067 -1.7674 1.3557 10 6 6.1028 -1.8813 3.7693 11 7 7.5514 -1.6557 3.8627 12 6 7.8484 -0.2389 4.1129 13 6 8.1517 -2.5099 4.8960 14 6 9.6538 -2.4359 4.7985 15 1 10.1162 -1.8159 4.0447 16 6 10.4378 -3.1596 5.6718 17 7 11.7486 -3.0954 5.5864 18 14 9.6381 -4.2314 6.9761 19 1 9.4212 -5.5956 6.4311 20 1 10.5245 -4.3085 8.1651 21 1 8.3330 -3.6420 7.3692 22 8 2.0063 -0.6736 -1.1668 23 6 2.1121 0.0629 -2.3048 24 6 1.6590 1.3732 -2.3287 25 6 1.7728 2.1218 -3.4846 26 6 2.3275 1.5627 -4.6210 27 6 2.7755 0.2548 -4.6031 28 6 2.6689 -0.4976 -3.4472 29 9 3.1070 -1.7755 -3.4292 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7716 1.2055 34 1 1.6055 -0.2619 2.1370 35 1 3.9280 -0.9787 0.4695 36 1 3.7559 -2.3543 2.4661 37 1 3.6096 -0.8441 3.3969 38 1 5.9022 -2.7077 1.2592 39 1 5.9060 -2.9505 3.6914 40 1 5.6154 -1.4862 4.6607 41 1 8.9279 -0.0876 4.1076 42 1 7.4455 0.0509 5.0834 43 1 7.3922 0.3712 3.3333 44 1 7.8342 -2.1669 5.8806 45 1 7.8284 -3.5403 4.7485 46 1 12.3001 -3.6043 6.2010 47 1 1.2210 1.8096 -1.4432 48 1 1.4238 3.1438 -3.5017 49 1 2.4114 2.1488 -5.5242 50 1 3.2080 -0.1798 -5.4922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579463775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -97.634690 kcal Electronic energy + Delta-G solvation = -29310.149169 eV Core-core repulsion = 25059.492847 eV Total energy + Delta-G solvation = -4250.656322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.99355 -40.60287 -38.55284 -38.00074 -36.13698 -35.10336 -32.62442 -32.41760 -31.07545 -29.98157 -29.85993 -27.80484 -26.66325 -24.97088 -23.94909 -22.98161 -22.76846 -21.46453 -20.94087 -20.10679 -18.95601 -17.44677 -17.08253 -16.89967 -16.43715 -16.25544 -16.04287 -15.58760 -15.50663 -15.10481 -14.80982 -14.69861 -14.61553 -14.38214 -14.14736 -13.82351 -13.43249 -13.28742 -13.21227 -12.75576 -12.72818 -12.46994 -12.43965 -12.33144 -12.21428 -12.04322 -11.61905 -11.55919 -11.34054 -11.20076 -11.14395 -10.97182 -10.77820 -10.52707 -10.27977 -10.02536 -9.56784 -9.31742 -9.21838 -8.65555 -8.55356 -8.53842 -7.31175 -6.03034 -4.00023 0.74507 0.88923 2.66158 3.20817 3.28317 3.35587 3.36917 3.72444 3.90214 4.27961 4.37356 4.42745 4.49848 4.54365 4.61027 4.69736 4.77597 4.82367 4.84697 5.01558 5.06173 5.13129 5.16380 5.21281 5.30197 5.36216 5.37308 5.43727 5.56112 5.59182 5.64167 5.65745 5.68621 5.79861 5.94066 5.99422 6.11906 6.25542 6.28606 6.34476 6.70638 6.73220 6.86874 6.95968 7.00722 7.20769 7.59936 7.91502 7.93256 8.10147 8.68499 9.06977 9.58438 11.10183 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.001914 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.721584 B =14627.671277 C =15270.366640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.086 0.914 4 C 0.064 3.936 5 N -0.685 5.685 6 C 0.027 3.973 7 C 0.114 3.886 8 H 0.105 0.895 9 O -0.544 6.544 10 C 0.022 3.978 11 N -0.521 5.521 12 C 0.036 3.964 13 C 0.162 3.838 14 C -0.507 4.507 15 H 0.082 0.918 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.269 1.269 22 O -0.302 6.302 23 C 0.107 3.893 24 C -0.184 4.184 25 C -0.090 4.090 26 C -0.132 4.132 27 C -0.117 4.117 28 C 0.067 3.933 29 F -0.132 7.132 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.356 0.644 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.367 0.633 39 H 0.069 0.931 40 H 0.029 0.971 41 H 0.079 0.921 42 H 0.010 0.990 43 H 0.051 0.949 44 H -0.013 1.013 45 H 0.022 0.978 46 H 0.263 0.737 47 H 0.139 0.861 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.009 9.795 -16.649 34.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.025 3.975 3 H 0.104 0.896 4 C -0.066 4.066 5 N -0.318 5.318 6 C -0.103 4.103 7 C 0.054 3.946 8 H 0.123 0.877 9 O -0.347 6.347 10 C -0.108 4.108 11 N -0.244 5.244 12 C -0.113 4.113 13 C 0.036 3.964 14 C -0.545 4.545 15 H 0.100 0.900 16 C -0.135 4.135 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.194 1.194 22 O -0.216 6.216 23 C 0.060 3.940 24 C -0.203 4.203 25 C -0.109 4.109 26 C -0.150 4.150 27 C -0.136 4.136 28 C 0.048 3.952 29 F -0.110 7.110 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.176 0.824 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.213 0.787 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.028 0.972 43 H 0.069 0.931 44 H 0.004 0.996 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.157 0.843 48 H 0.149 0.851 49 H 0.151 0.849 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.336 10.555 -16.748 33.751 hybrid contribution -1.053 -1.979 1.603 2.756 sum -28.389 8.576 -15.145 33.299 Atomic orbital electron populations 1.22360 0.94562 1.03662 1.03197 1.22623 0.93958 0.97716 0.83155 0.89578 1.22056 0.89637 0.99257 0.95623 1.60390 1.03876 1.60970 1.06602 1.22686 0.97028 0.96576 0.93965 1.21988 0.88735 0.98756 0.85143 0.87690 1.86641 1.77960 1.27379 1.42741 1.22766 0.91324 1.00255 0.96411 1.61852 1.07269 1.06042 1.49252 1.22291 1.03044 0.88793 0.97146 1.20200 0.96453 0.92010 0.87767 1.21044 0.88274 1.28165 1.17037 0.90036 1.24915 0.94740 0.96552 0.97268 1.69898 1.03616 1.42265 1.38148 0.86861 0.79583 0.81409 0.81865 1.20180 1.21197 1.19426 1.86165 1.81040 1.37989 1.16422 1.18980 0.97201 0.91281 0.86538 1.21240 1.05411 0.93120 1.00482 1.21032 0.97827 0.99869 0.92142 1.20935 1.00450 0.94534 0.99116 1.21061 1.01000 0.94820 0.96693 1.17049 1.03787 0.80903 0.93509 1.91520 1.87436 1.35098 1.96964 0.90527 0.91553 0.91273 0.94098 0.89048 0.82406 0.94880 0.90328 0.78707 0.91284 0.95250 0.90216 0.97155 0.93077 0.99570 0.96038 0.92693 0.84329 0.85104 0.84892 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 9.17 37.16 0.34 -0.70 16 2 C 0.08 0.64 2.46 -26.73 -0.07 0.58 16 3 H 0.09 0.66 6.31 -51.93 -0.33 0.33 16 4 C 0.06 0.54 5.39 -3.83 -0.02 0.52 16 5 N -0.69 -7.45 6.50 -113.78 -0.74 -8.19 16 6 C 0.03 0.31 5.39 -3.82 -0.02 0.28 16 7 C 0.11 1.62 3.20 -26.73 -0.09 1.53 16 8 H 0.11 1.62 6.26 -51.93 -0.33 1.29 16 9 O -0.54 -8.48 12.62 -35.23 -0.44 -8.93 16 10 C 0.02 0.37 4.59 -3.82 -0.02 0.35 16 11 N -0.52 -11.14 4.70 -244.36 -1.15 -12.29 16 12 C 0.04 0.71 9.17 60.07 0.55 1.26 16 13 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 14 C -0.51 -14.72 9.07 -34.44 -0.31 -15.03 16 15 H 0.08 2.59 7.35 -52.49 -0.39 2.20 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 18 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 O -0.30 -3.19 9.19 -19.61 -0.18 -3.37 16 23 C 0.11 1.07 6.61 -39.18 -0.26 0.82 16 24 C -0.18 -1.41 8.25 -39.44 -0.33 -1.74 16 25 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 26 C -0.13 -0.85 10.04 -39.57 -0.40 -1.25 16 27 C -0.12 -0.94 10.02 -39.54 -0.40 -1.34 16 28 C 0.07 0.72 7.31 -39.30 -0.29 0.43 16 29 F -0.13 -1.65 17.11 2.25 0.04 -1.61 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.36 6.91 -51.93 -0.36 0.00 16 32 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.36 4.38 7.68 -39.29 -0.30 4.08 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.37 4.66 9.05 45.56 0.41 5.08 16 39 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 40 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 41 H 0.08 1.76 6.86 -51.93 -0.36 1.41 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.05 0.89 6.21 -51.93 -0.32 0.57 16 44 H -0.01 -0.33 7.18 -51.93 -0.37 -0.71 16 45 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.14 0.82 5.43 -52.49 -0.28 0.54 16 48 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 49 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 50 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 404.39 15.07 6.09 6.09 Total: -1.00 -33.78 404.39 -9.32 -43.10 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.23 Total: 4.73 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.81 Total: -9.41 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -1.12 Total: -47.67 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.62 Total: -12.30 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.78 -9.32 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579463775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.533 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds