Wall clock time and date at job start Sat Apr 11 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 110.99643 * 2 1 4 4 C 1.50701 * 109.47184 * 293.95244 * 3 2 1 5 5 H 1.07996 * 120.00030 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00087 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99826 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00191 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47097 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47251 * 120.00143 * 8 6 4 11 11 H 1.48503 * 109.47354 * 239.99915 * 8 6 4 12 12 C 1.46901 * 111.00318 * 123.95436 * 2 1 3 13 13 C 1.52996 * 109.46962 * 66.04862 * 12 2 1 14 14 H 1.09004 * 109.47108 * 304.99929 * 13 12 2 15 15 O 1.42896 * 109.47260 * 65.00163 * 13 12 2 16 16 C 1.53002 * 109.46891 * 185.00221 * 13 12 2 17 17 N 1.46906 * 109.47053 * 179.97438 * 16 13 12 18 18 C 1.46895 * 110.99789 * 179.97438 * 17 16 13 19 19 C 1.53004 * 109.47035 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.47157 * 59.99991 * 19 18 17 21 21 O 1.42901 * 109.47147 * 300.00445 * 19 18 17 22 22 C 1.52998 * 109.47380 * 180.02562 * 19 18 17 23 23 C 1.50698 * 109.47064 * 185.00073 * 22 19 18 24 24 C 1.38266 * 119.98527 * 90.00296 * 23 22 19 25 25 C 1.38224 * 120.04936 * 179.97438 * 24 23 22 26 26 C 1.38228 * 120.02615 * 359.97438 * 25 24 23 27 27 C 1.38434 * 119.97210 * 0.02707 * 26 25 24 28 28 F 1.35106 * 120.02451 * 179.97438 * 27 26 25 29 29 C 1.38171 * 119.98658 * 269.72672 * 23 22 19 30 30 H 1.08999 * 109.46960 * 296.04220 * 1 2 3 31 31 H 1.08998 * 109.47765 * 56.04715 * 1 2 3 32 32 H 1.09003 * 109.47079 * 176.04510 * 1 2 3 33 33 H 1.08992 * 109.47286 * 53.95821 * 3 2 1 34 34 H 1.09007 * 109.47180 * 173.95592 * 3 2 1 35 35 H 0.97006 * 119.99967 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46863 * 306.04886 * 12 2 1 37 37 H 1.09006 * 109.46960 * 186.04519 * 12 2 1 38 38 H 0.96699 * 114.00604 * 60.00013 * 15 13 12 39 39 H 1.08992 * 109.47056 * 59.99654 * 16 13 12 40 40 H 1.09004 * 109.47006 * 299.99770 * 16 13 12 41 41 H 1.00902 * 111.00068 * 56.04103 * 17 16 13 42 42 H 1.08996 * 109.47424 * 299.99656 * 18 17 16 43 43 H 1.09002 * 109.47411 * 60.00282 * 18 17 16 44 44 H 0.96706 * 113.99785 * 299.99503 * 21 19 18 45 45 H 1.08997 * 109.46974 * 305.00211 * 22 19 18 46 46 H 1.09001 * 109.46857 * 64.99982 * 22 19 18 47 47 H 1.07995 * 119.97787 * 359.97438 * 24 23 22 48 48 H 1.07998 * 119.99065 * 180.02562 * 25 24 23 49 49 H 1.08000 * 120.01241 * 180.02562 * 26 25 24 50 50 H 1.08001 * 120.01202 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0265 3.3495 -1.5285 7 7 2.7117 4.0020 -0.6149 8 14 1.5816 4.1873 -3.1376 9 1 0.8135 3.2450 -3.9904 10 1 0.7539 5.3882 -2.8582 11 1 2.8229 4.5950 -3.8433 12 6 1.9955 -0.7660 1.1376 13 6 1.6316 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0198 2.2130 17 7 1.7201 -4.4376 2.0527 18 6 2.1277 -5.2167 3.2294 19 6 1.7469 -6.6846 3.0260 20 1 2.2521 -7.0718 2.1411 21 8 0.3326 -6.7900 2.8514 22 6 2.1708 -7.4960 4.2519 23 6 1.9079 -8.9587 4.0015 24 6 2.8871 -9.7484 3.4277 25 6 2.6476 -11.0902 3.1980 26 6 1.4288 -11.6441 3.5422 27 6 0.4478 -10.8543 4.1168 28 9 -0.7440 -11.3945 4.4532 29 6 0.6906 -9.5112 4.3508 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 1.5610 1.9273 0.8309 34 1 3.0797 1.3445 0.1082 35 1 2.9862 4.9182 -0.7769 36 1 1.5611 -0.3873 2.0627 37 1 3.0798 -0.6610 1.1755 38 1 3.2602 -2.7166 -0.1361 39 1 1.5636 -2.6179 3.0904 40 1 3.1484 -2.9235 2.3401 41 1 2.1253 -4.8170 1.2101 42 1 3.2065 -5.1360 3.3628 43 1 1.6222 -4.8299 4.1143 44 1 -0.1819 -6.4632 3.6022 45 1 3.2341 -7.3446 4.4379 46 1 1.5996 -7.1676 5.1202 47 1 3.8397 -9.3166 3.1588 48 1 3.4132 -11.7063 2.7501 49 1 1.2421 -12.6927 3.3630 50 1 -0.0723 -8.8951 4.8034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582546335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:02 Heat of formation + Delta-G solvation = -122.452193 kcal Electronic energy + Delta-G solvation = -28410.066293 eV Core-core repulsion = 24158.333804 eV Total energy + Delta-G solvation = -4251.732489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.24224 -39.88395 -38.54883 -37.73884 -35.79655 -34.62302 -33.26679 -32.52082 -31.06340 -30.51702 -29.08072 -27.18119 -26.51935 -25.01999 -23.28395 -23.14854 -22.28275 -21.67489 -21.16091 -20.16295 -17.82886 -17.10103 -16.84624 -16.60164 -16.47988 -16.18729 -16.05061 -15.86401 -15.69750 -14.97916 -14.91596 -14.76057 -14.41195 -14.33479 -14.06556 -13.69118 -13.67169 -13.44803 -13.02045 -12.79044 -12.46008 -12.45725 -12.38029 -12.02832 -11.93301 -11.85257 -11.53728 -11.32915 -11.25792 -11.10686 -10.87348 -10.75265 -10.65911 -10.44525 -10.26318 -10.00127 -9.61650 -9.34725 -9.11268 -9.03743 -8.55498 -8.43506 -7.18656 -6.02482 -4.03219 0.72132 0.79140 3.11569 3.31931 3.39222 3.45205 3.68231 3.83408 4.13538 4.18935 4.34248 4.43521 4.51189 4.61301 4.64799 4.69980 4.78958 4.83297 4.84460 4.94494 5.05036 5.17386 5.21130 5.27521 5.30464 5.35994 5.44841 5.51994 5.59295 5.64828 5.67944 5.70358 5.73352 5.86457 6.04875 6.06078 6.21528 6.34110 6.42105 6.46933 6.78597 6.80260 7.21153 7.27532 7.33300 7.44250 7.81373 7.95625 8.10536 8.21357 8.56307 9.05342 9.61116 11.08549 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032763 B = 0.001431 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.413671 B =19568.316597 C =19692.748116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.674 5.674 18 C 0.026 3.974 19 C 0.117 3.883 20 H 0.098 0.902 21 O -0.541 6.541 22 C -0.116 4.116 23 C -0.045 4.045 24 C -0.130 4.130 25 C -0.089 4.089 26 C -0.160 4.160 27 C 0.099 3.901 28 F -0.141 7.141 29 C -0.138 4.138 30 H 0.008 0.992 31 H 0.074 0.926 32 H 0.048 0.952 33 H -0.011 1.011 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.365 0.635 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.349 0.651 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.371 0.629 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.128 0.872 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 -29.632 14.155 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.307 5.307 18 C -0.104 4.104 19 C 0.057 3.943 20 H 0.116 0.884 21 O -0.346 6.346 22 C -0.154 4.154 23 C -0.045 4.045 24 C -0.148 4.148 25 C -0.107 4.107 26 C -0.179 4.179 27 C 0.080 3.920 28 F -0.120 7.120 29 C -0.157 4.157 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.007 0.993 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.211 0.789 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.169 0.831 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.218 0.782 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.146 0.854 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.313 -29.968 13.212 32.753 hybrid contribution 0.825 1.286 0.801 1.725 sum 1.137 -28.683 14.013 31.943 Atomic orbital electron populations 1.22263 0.88922 0.99706 1.00393 1.62023 1.06897 1.17372 1.39088 1.19750 0.95229 0.81679 0.96652 1.21222 1.34552 0.96833 1.01694 0.91700 1.24999 0.95337 0.97357 0.97045 1.69974 1.38637 1.11384 1.34079 0.86428 0.78146 0.79268 0.83519 1.19591 1.21153 1.21031 1.22711 1.00315 0.93925 0.93485 1.21996 0.98364 0.90638 0.83582 0.87772 1.86625 1.22702 1.83808 1.41737 1.22701 0.98344 0.89068 1.00111 1.60253 1.64211 1.01684 1.04505 1.22701 0.98487 0.94149 0.95086 1.21862 0.83053 0.92300 0.97098 0.88403 1.86667 1.15957 1.86150 1.45785 1.21389 1.03342 0.91204 0.99478 1.19524 0.92907 0.95342 0.96709 1.21127 0.99555 0.93900 1.00230 1.20995 0.96228 0.95204 0.98305 1.21158 0.93879 1.00695 1.02182 1.17721 0.81802 0.92252 1.00241 1.91509 1.43857 1.86307 1.90280 1.20987 0.98288 0.93299 1.03141 0.97327 0.90681 0.93321 0.99306 0.95432 0.93040 0.95385 0.91375 0.78879 0.90483 0.95157 0.83128 0.94559 0.90773 0.78230 0.89509 0.90087 0.85387 0.84999 0.84894 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.54 4.70 -244.37 -1.15 -12.69 16 3 C 0.19 5.05 4.72 -4.97 -0.02 5.02 16 4 C -0.50 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 C 0.03 0.44 4.60 -3.83 -0.02 0.42 16 13 C 0.11 1.62 3.19 -26.73 -0.09 1.54 16 14 H 0.10 1.64 6.34 -51.93 -0.33 1.31 16 15 O -0.55 -8.17 12.62 -35.23 -0.44 -8.62 16 16 C 0.03 0.30 5.39 -3.82 -0.02 0.28 16 17 N -0.67 -6.81 6.37 -113.78 -0.72 -7.53 16 18 C 0.03 0.19 5.35 -3.82 -0.02 0.17 16 19 C 0.12 0.79 3.16 -26.73 -0.08 0.70 16 20 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 21 O -0.54 -4.73 12.71 -35.23 -0.45 -5.17 16 22 C -0.12 -0.58 5.03 -27.88 -0.14 -0.72 16 23 C -0.04 -0.30 4.96 -104.64 -0.52 -0.82 16 24 C -0.13 -0.79 9.70 -39.58 -0.38 -1.18 16 25 C -0.09 -0.53 10.04 -39.59 -0.40 -0.93 16 26 C -0.16 -1.13 10.03 -39.51 -0.40 -1.53 16 27 C 0.10 0.84 7.30 -39.42 -0.29 0.56 16 28 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 29 C -0.14 -1.05 9.39 -39.51 -0.37 -1.43 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 1.63 6.76 -51.93 -0.35 1.27 16 32 H 0.05 0.86 6.37 -51.93 -0.33 0.53 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 34 H 0.03 0.77 7.93 -51.93 -0.41 0.35 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 36 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 38 H 0.37 4.34 9.05 45.56 0.41 4.75 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.35 3.69 8.12 -39.29 -0.32 3.37 16 42 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.37 2.16 9.05 45.56 0.41 2.57 16 45 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 46 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 47 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 48 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 49 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 414.21 15.07 6.24 6.24 Total: -1.00 -33.52 414.21 -10.11 -43.63 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.75 Total: 4.65 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.59 Total: -9.88 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -1.14 Total: -46.38 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.89 Total: -13.79 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.52 -10.11 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582546335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.824 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds