Wall clock time and date at job start Sat Apr 11 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 110.99643 * 2 1 4 4 C 1.50701 * 109.47184 * 293.95244 * 3 2 1 5 5 H 1.07996 * 120.00030 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00087 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99826 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00191 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47097 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47251 * 120.00143 * 8 6 4 11 11 H 1.48503 * 109.47354 * 239.99915 * 8 6 4 12 12 C 1.46901 * 111.00318 * 123.95436 * 2 1 3 13 13 C 1.52996 * 109.46962 * 66.04862 * 12 2 1 14 14 H 1.09004 * 109.47108 * 304.99929 * 13 12 2 15 15 O 1.42896 * 109.47260 * 65.00163 * 13 12 2 16 16 C 1.53002 * 109.46891 * 185.00221 * 13 12 2 17 17 N 1.46906 * 109.47053 * 179.97438 * 16 13 12 18 18 C 1.46895 * 110.99789 * 179.97438 * 17 16 13 19 19 C 1.53004 * 109.47035 * 179.97438 * 18 17 16 20 20 H 1.09005 * 109.47157 * 59.99991 * 19 18 17 21 21 O 1.42901 * 109.47147 * 300.00445 * 19 18 17 22 22 C 1.52998 * 109.47380 * 180.02562 * 19 18 17 23 23 C 1.50698 * 109.47064 * 185.00073 * 22 19 18 24 24 C 1.38266 * 119.98527 * 90.00296 * 23 22 19 25 25 C 1.38224 * 120.04936 * 179.97438 * 24 23 22 26 26 C 1.38228 * 120.02615 * 359.97438 * 25 24 23 27 27 C 1.38434 * 119.97210 * 0.02707 * 26 25 24 28 28 F 1.35106 * 120.02451 * 179.97438 * 27 26 25 29 29 C 1.38171 * 119.98658 * 269.72672 * 23 22 19 30 30 H 1.08999 * 109.46960 * 296.04220 * 1 2 3 31 31 H 1.08998 * 109.47765 * 56.04715 * 1 2 3 32 32 H 1.09003 * 109.47079 * 176.04510 * 1 2 3 33 33 H 1.08992 * 109.47286 * 53.95821 * 3 2 1 34 34 H 1.09007 * 109.47180 * 173.95592 * 3 2 1 35 35 H 0.97006 * 119.99967 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46863 * 306.04886 * 12 2 1 37 37 H 1.09006 * 109.46960 * 186.04519 * 12 2 1 38 38 H 0.96699 * 114.00604 * 60.00013 * 15 13 12 39 39 H 1.08992 * 109.47056 * 59.99654 * 16 13 12 40 40 H 1.09004 * 109.47006 * 299.99770 * 16 13 12 41 41 H 1.00902 * 111.00068 * 56.04103 * 17 16 13 42 42 H 1.08996 * 109.47424 * 299.99656 * 18 17 16 43 43 H 1.09002 * 109.47411 * 60.00282 * 18 17 16 44 44 H 0.96706 * 113.99785 * 299.99503 * 21 19 18 45 45 H 1.08997 * 109.46974 * 305.00211 * 22 19 18 46 46 H 1.09001 * 109.46857 * 64.99982 * 22 19 18 47 47 H 1.07995 * 119.97787 * 359.97438 * 24 23 22 48 48 H 1.07998 * 119.99065 * 180.02562 * 25 24 23 49 49 H 1.08000 * 120.01241 * 180.02562 * 26 25 24 50 50 H 1.08001 * 120.01202 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0265 3.3495 -1.5285 7 7 2.7117 4.0020 -0.6149 8 14 1.5816 4.1873 -3.1376 9 1 0.8135 3.2450 -3.9904 10 1 0.7539 5.3882 -2.8582 11 1 2.8229 4.5950 -3.8433 12 6 1.9955 -0.7660 1.1376 13 6 1.6316 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0198 2.2130 17 7 1.7201 -4.4376 2.0527 18 6 2.1277 -5.2167 3.2294 19 6 1.7469 -6.6846 3.0260 20 1 2.2521 -7.0718 2.1411 21 8 0.3326 -6.7900 2.8514 22 6 2.1708 -7.4960 4.2519 23 6 1.9079 -8.9587 4.0015 24 6 2.8871 -9.7484 3.4277 25 6 2.6476 -11.0902 3.1980 26 6 1.4288 -11.6441 3.5422 27 6 0.4478 -10.8543 4.1168 28 9 -0.7440 -11.3945 4.4532 29 6 0.6906 -9.5112 4.3508 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 1.5610 1.9273 0.8309 34 1 3.0797 1.3445 0.1082 35 1 2.9862 4.9182 -0.7769 36 1 1.5611 -0.3873 2.0627 37 1 3.0798 -0.6610 1.1755 38 1 3.2602 -2.7166 -0.1361 39 1 1.5636 -2.6179 3.0904 40 1 3.1484 -2.9235 2.3401 41 1 2.1253 -4.8170 1.2101 42 1 3.2065 -5.1360 3.3628 43 1 1.6222 -4.8299 4.1143 44 1 -0.1819 -6.4632 3.6022 45 1 3.2341 -7.3446 4.4379 46 1 1.5996 -7.1676 5.1202 47 1 3.8397 -9.3166 3.1588 48 1 3.4132 -11.7063 2.7501 49 1 1.2421 -12.6927 3.3630 50 1 -0.0723 -8.8951 4.8034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582546335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:01 Heat of formation + Delta-G solvation = -149.508206 kcal Electronic energy + Delta-G solvation = -28411.239530 eV Core-core repulsion = 24158.333804 eV Total energy + Delta-G solvation = -4252.905726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.89060 -40.37766 -39.63284 -38.52654 -37.25232 -35.51804 -34.62429 -33.76227 -31.69131 -31.38837 -30.06242 -28.96308 -27.67469 -26.27184 -24.60155 -23.65878 -22.88462 -22.66859 -22.01754 -21.74898 -18.57683 -18.39659 -17.77763 -17.43959 -17.22054 -17.10602 -16.91976 -16.74861 -16.58648 -16.41191 -16.03937 -15.74066 -15.49697 -15.45700 -14.95021 -14.77693 -14.66259 -14.24477 -14.14383 -13.81372 -13.64284 -13.44758 -13.21700 -13.08055 -12.89769 -12.79492 -12.63886 -12.57435 -12.49824 -12.38530 -12.37189 -12.03095 -12.00669 -11.75834 -11.61717 -11.40593 -11.03988 -10.63485 -10.62591 -9.84632 -9.57129 -9.28203 -8.95896 -8.21406 -6.31067 0.20754 0.30054 1.40732 1.41376 1.55469 2.40149 2.61144 2.93035 3.11160 3.28265 3.39734 3.65368 3.70191 3.73334 3.89131 3.97832 4.02631 4.14707 4.17473 4.25042 4.27282 4.33725 4.37608 4.42444 4.47257 4.55991 4.61307 4.69800 4.72581 4.75010 4.82624 4.85814 5.04132 5.06476 5.10496 5.16553 5.17850 5.19130 5.21673 5.32556 5.40097 5.58292 5.64836 5.98243 6.03092 6.08099 6.32028 6.45306 6.64170 6.85265 6.97457 6.98447 7.38787 8.89706 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032763 B = 0.001431 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.413671 B =19568.316597 C =19692.748116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.127 3.873 14 H 0.091 0.909 15 O -0.561 6.561 16 C 0.041 3.959 17 N -0.686 5.686 18 C 0.029 3.971 19 C 0.123 3.877 20 H 0.089 0.911 21 O -0.565 6.565 22 C -0.107 4.107 23 C -0.052 4.052 24 C -0.133 4.133 25 C -0.092 4.092 26 C -0.169 4.169 27 C 0.069 3.931 28 F -0.155 7.155 29 C -0.150 4.150 30 H 0.012 0.988 31 H 0.054 0.946 32 H 0.074 0.926 33 H -0.039 1.039 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.379 0.621 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.346 0.654 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.381 0.619 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.150 0.850 48 H 0.157 0.843 49 H 0.144 0.856 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 -30.422 14.093 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.067 3.933 14 H 0.108 0.892 15 O -0.367 6.367 16 C -0.089 4.089 17 N -0.318 5.318 18 C -0.100 4.100 19 C 0.063 3.937 20 H 0.107 0.893 21 O -0.372 6.372 22 C -0.145 4.145 23 C -0.052 4.052 24 C -0.151 4.151 25 C -0.110 4.110 26 C -0.188 4.188 27 C 0.050 3.950 28 F -0.134 7.134 29 C -0.169 4.169 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.093 0.907 33 H -0.021 1.021 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.227 0.773 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.165 0.835 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.123 0.877 46 H 0.110 0.890 47 H 0.168 0.832 48 H 0.174 0.826 49 H 0.161 0.839 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.093 -30.783 13.171 33.500 hybrid contribution 0.612 1.476 0.848 1.809 sum 1.705 -29.307 14.019 32.533 Atomic orbital electron populations 1.22221 0.87947 1.00998 0.99630 1.61936 1.07892 1.14893 1.41741 1.19405 0.93696 0.83944 0.94897 1.21510 1.34758 0.97515 1.02431 0.92178 1.25899 0.95009 0.98003 1.00700 1.70086 1.39431 1.11880 1.36093 0.85328 0.78109 0.78141 0.78999 1.18975 1.20331 1.20262 1.22834 1.00233 0.95349 0.92000 1.21794 0.97591 0.88833 0.85033 0.89162 1.86585 1.24044 1.83678 1.42356 1.22476 0.99025 0.89312 0.98121 1.60234 1.64739 1.01368 1.05469 1.22732 0.99370 0.93872 0.94039 1.21813 0.82133 0.92219 0.97530 0.89334 1.86631 1.17182 1.86443 1.46914 1.21339 1.04571 0.89715 0.98895 1.19755 0.92583 0.96305 0.96541 1.21488 1.00282 0.93997 0.99347 1.21336 0.96239 0.95649 0.97758 1.21406 0.94101 1.01304 1.01992 1.18069 0.81923 0.93115 1.01858 1.91464 1.44717 1.86555 1.90631 1.21161 0.99066 0.93133 1.03498 0.96994 0.92720 0.90702 1.02091 0.97662 0.92672 0.94907 0.91277 0.77331 0.89992 0.93917 0.83510 0.93169 0.90052 0.77029 0.87731 0.89022 0.83234 0.82585 0.83851 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.78 16 2 N -0.54 -23.65 4.70 -927.06 -4.36 -28.01 16 3 C 0.21 11.15 4.72 85.56 0.40 11.56 16 4 C -0.52 -30.29 8.46 25.60 0.22 -30.08 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.10 5.46 84.65 0.46 0.56 16 7 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 8 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.03 0.84 4.60 86.30 0.40 1.24 16 13 C 0.13 3.44 3.19 30.59 0.10 3.54 16 14 H 0.09 2.71 6.34 -2.38 -0.02 2.70 16 15 O -0.56 -16.05 12.62 -148.98 -1.88 -17.93 16 16 C 0.04 0.80 5.39 86.30 0.47 1.26 16 17 N -0.69 -12.41 6.37 -513.88 -3.27 -15.68 16 18 C 0.03 0.34 5.35 86.31 0.46 0.81 16 19 C 0.12 1.41 3.16 30.60 0.10 1.51 16 20 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 21 O -0.57 -9.19 12.71 -148.98 -1.89 -11.08 16 22 C -0.11 -0.81 5.03 29.85 0.15 -0.66 16 23 C -0.05 -0.60 4.96 -19.87 -0.10 -0.70 16 24 C -0.13 -1.34 9.70 22.27 0.22 -1.13 16 25 C -0.09 -0.94 10.04 22.26 0.22 -0.72 16 26 C -0.17 -2.31 10.03 22.31 0.22 -2.08 16 27 C 0.07 1.20 7.30 22.38 0.16 1.36 16 28 F -0.15 -3.12 17.27 44.97 0.78 -2.34 16 29 C -0.15 -2.23 9.39 22.31 0.21 -2.02 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 2.38 6.76 -2.39 -0.02 2.37 16 32 H 0.07 2.59 6.37 -2.39 -0.02 2.57 16 33 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 34 H 0.01 0.30 7.93 -2.38 -0.02 0.28 16 35 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 36 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 37 H 0.07 2.30 7.93 -2.38 -0.02 2.28 16 38 H 0.38 8.43 9.05 -74.06 -0.67 7.76 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.35 6.67 8.12 -89.69 -0.73 5.94 16 42 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.38 4.00 9.05 -74.05 -0.67 3.33 16 45 H 0.10 0.44 8.08 -2.39 -0.02 0.42 16 46 H 0.09 0.51 8.08 -2.39 -0.02 0.49 16 47 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 48 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 49 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 50 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -72.71 414.21 -4.57 -77.29 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -1.11 Total: 19.78 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.86 Total: -12.77 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -7.35 Total: -99.79 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -3.77 Total: -29.01 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -72.71 -4.57 -77.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582546335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.221 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds