Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00017 * 2 1 4 4 C 1.50707 * 109.47040 * 66.04483 * 3 2 1 5 5 H 1.08003 * 119.99506 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00268 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99814 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99943 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47066 * 60.00128 * 8 6 4 10 10 H 1.48501 * 109.46786 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46899 * 300.00007 * 8 6 4 12 12 C 1.46904 * 111.00147 * 236.04876 * 2 1 3 13 13 C 1.53003 * 109.47074 * 199.84632 * 12 2 1 14 14 H 1.08998 * 109.46919 * 300.46351 * 13 12 2 15 15 O 1.42895 * 109.46858 * 60.46357 * 13 12 2 16 16 C 1.53002 * 109.46855 * 180.46177 * 13 12 2 17 17 N 1.46895 * 109.47007 * 179.97438 * 16 13 12 18 18 C 1.46895 * 110.99976 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47157 * 180.02562 * 18 17 16 20 20 H 1.08995 * 109.47484 * 305.00050 * 19 18 17 21 21 C 1.53001 * 109.47139 * 65.00175 * 19 18 17 22 22 O 1.42900 * 109.47271 * 184.99898 * 21 19 18 23 23 C 1.50704 * 109.47383 * 184.99791 * 19 18 17 24 24 C 1.38241 * 119.97317 * 299.72870 * 23 19 18 25 25 C 1.38207 * 120.02532 * 179.72378 * 24 23 19 26 26 C 1.38459 * 119.97097 * 0.52431 * 25 24 23 27 27 F 1.35096 * 120.02699 * 179.72968 * 26 25 24 28 28 C 1.38463 * 119.94854 * 359.74922 * 26 25 24 29 29 C 1.38192 * 119.97541 * 359.97438 * 28 26 25 30 30 H 1.09006 * 109.47216 * 188.77646 * 1 2 3 31 31 H 1.09004 * 109.47491 * 308.76749 * 1 2 3 32 32 H 1.08999 * 109.47381 * 68.77678 * 1 2 3 33 33 H 1.08993 * 109.47849 * 186.04708 * 3 2 1 34 34 H 1.08998 * 109.46977 * 306.05391 * 3 2 1 35 35 H 0.97003 * 119.99632 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47125 * 79.84898 * 12 2 1 37 37 H 1.09000 * 109.46943 * 319.84879 * 12 2 1 38 38 H 0.96703 * 114.00118 * 59.99867 * 15 13 12 39 39 H 1.09003 * 109.46873 * 60.00269 * 16 13 12 40 40 H 1.09000 * 109.47386 * 300.00594 * 16 13 12 41 41 H 1.00900 * 111.00611 * 303.95637 * 17 16 13 42 42 H 1.08996 * 109.47463 * 60.00104 * 18 17 16 43 43 H 1.09000 * 109.47097 * 300.00164 * 18 17 16 44 44 H 1.09005 * 109.47005 * 304.99782 * 21 19 18 45 45 H 1.08995 * 109.47336 * 65.00018 * 21 19 18 46 46 H 0.96697 * 114.00092 * 179.97438 * 22 21 19 47 47 H 1.07997 * 119.98953 * 359.97438 * 24 23 19 48 48 H 1.08001 * 120.01101 * 180.29906 * 25 24 23 49 49 H 1.08003 * 120.01266 * 179.97438 * 28 26 25 50 50 H 1.08003 * 119.99126 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0745 1.5112 2.0488 6 6 2.0275 3.3491 1.5290 7 7 2.7127 4.0016 0.6155 8 14 1.5836 4.1864 3.1388 9 1 2.1754 3.4285 4.2705 10 1 2.1157 5.5728 3.1388 11 1 0.1064 4.2235 3.2865 12 6 1.9954 -0.7659 -1.1376 13 6 3.4449 -1.1665 -0.8557 14 1 4.0463 -0.2704 -0.7028 15 8 3.4946 -1.9796 0.3183 16 6 3.9969 -1.9544 -2.0455 17 7 5.3887 -2.3384 -1.7751 18 6 5.9531 -3.0978 -2.8988 19 6 7.4001 -3.4797 -2.5807 20 1 7.9671 -2.5820 -2.3344 21 6 7.4240 -4.4406 -1.3903 22 8 8.7783 -4.7059 -1.0194 23 6 8.0179 -4.1508 -3.7803 24 6 7.4701 -5.3190 -4.2765 25 6 8.0324 -5.9322 -5.3801 26 6 9.1513 -5.3820 -5.9820 27 9 9.7052 -5.9834 -7.0575 28 6 9.7025 -4.2149 -5.4806 29 6 9.1351 -3.6004 -4.3805 30 1 -0.3634 -1.0157 0.1568 31 1 -0.3634 0.6435 0.8013 32 1 -0.3634 0.3720 -0.9579 33 1 3.0796 1.3445 -0.1082 34 1 1.5609 1.9274 -0.8308 35 1 2.9873 4.9177 0.7776 36 1 1.9565 -0.1525 -2.0378 37 1 1.3923 -1.6623 -1.2824 38 1 2.9804 -2.7960 0.2534 39 1 3.9590 -1.3341 -2.9410 40 1 3.3954 -2.8504 -2.1985 41 1 5.9534 -1.5287 -1.5665 42 1 5.9284 -2.4853 -3.8001 43 1 5.3656 -4.0020 -3.0578 44 1 6.8985 -3.9894 -0.5485 45 1 6.9336 -5.3739 -1.6667 46 1 8.8697 -5.3090 -0.2691 47 1 6.6001 -5.7504 -3.8042 48 1 7.6014 -6.8423 -5.7705 49 1 10.5755 -3.7850 -5.9491 50 1 9.5650 -2.6903 -3.9890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583812721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -119.020257 kcal Electronic energy + Delta-G solvation = -29007.547160 eV Core-core repulsion = 24755.963490 eV Total energy + Delta-G solvation = -4251.583669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.17367 -39.93871 -38.22546 -37.24620 -36.05400 -35.11760 -33.00347 -32.47413 -31.48299 -29.97285 -28.51293 -27.29083 -26.06542 -24.55150 -23.68569 -23.33272 -22.58124 -21.60342 -20.45711 -20.00356 -18.02785 -17.53950 -16.81657 -16.51618 -16.45329 -16.14631 -15.87351 -15.54348 -15.16775 -15.04857 -14.68513 -14.58764 -14.42362 -14.08190 -13.85304 -13.71164 -13.49115 -13.38629 -13.24068 -13.10032 -12.63722 -12.46645 -11.99575 -11.86471 -11.74386 -11.71475 -11.44037 -11.40785 -11.13075 -10.91436 -10.88175 -10.71291 -10.64021 -10.34866 -10.11815 -9.76455 -9.53062 -9.42788 -9.13905 -8.83458 -8.50728 -8.41617 -7.20479 -6.01660 -4.02082 0.82229 0.91131 3.24566 3.35005 3.38680 3.42347 3.83563 3.92807 3.96306 4.37424 4.43265 4.48679 4.57086 4.75110 4.83534 4.88316 4.93088 4.97116 5.07153 5.17275 5.28325 5.29069 5.34153 5.39841 5.50782 5.55194 5.59589 5.60157 5.69154 5.70575 5.73439 5.79574 5.80382 5.94043 6.02448 6.12813 6.24610 6.31355 6.47223 6.56571 6.72044 6.83196 7.22566 7.27291 7.31192 7.46001 7.80797 8.08731 8.17358 8.25642 8.56227 9.04907 9.61719 11.09379 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.001796 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.375495 B =15590.542200 C =15841.991010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.099 0.901 15 O -0.530 6.530 16 C 0.028 3.972 17 N -0.679 5.679 18 C 0.067 3.933 19 C -0.045 4.045 20 H 0.088 0.912 21 C 0.087 3.913 22 O -0.576 6.576 23 C -0.072 4.072 24 C -0.087 4.087 25 C -0.152 4.152 26 C 0.089 3.911 27 F -0.143 7.143 28 C -0.151 4.151 29 C -0.080 4.080 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.007 0.993 33 H 0.030 0.970 34 H -0.013 1.013 35 H 0.261 0.739 36 H 0.030 0.970 37 H 0.060 0.940 38 H 0.360 0.640 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.346 0.654 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.378 0.622 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.262 -20.593 -11.811 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.117 0.883 15 O -0.332 6.332 16 C -0.102 4.102 17 N -0.310 5.310 18 C -0.062 4.062 19 C -0.064 4.064 20 H 0.107 0.893 21 C 0.010 3.990 22 O -0.381 6.381 23 C -0.073 4.073 24 C -0.105 4.105 25 C -0.171 4.171 26 C 0.070 3.930 27 F -0.122 7.122 28 C -0.170 4.170 29 C -0.098 4.098 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.048 0.952 34 H 0.005 0.995 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.205 0.795 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.165 0.835 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.225 0.775 47 H 0.148 0.852 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.840 -20.316 -11.388 25.690 hybrid contribution -0.726 0.765 -0.768 1.305 sum 10.114 -19.552 -12.157 25.147 Atomic orbital electron populations 1.22227 0.88900 0.99953 1.00024 1.62020 1.06482 1.17739 1.39168 1.19754 0.95393 0.81546 0.96495 1.21121 1.34686 0.96800 1.01700 0.91896 1.24990 0.95338 0.97380 0.96998 1.69947 1.38486 1.11479 1.34131 0.86549 0.78624 0.78272 0.83898 1.20087 1.21415 1.20347 1.22677 0.96084 0.98110 0.93559 1.21845 0.95084 0.93241 0.83955 0.88287 1.86682 1.73556 1.35640 1.37342 1.22718 0.89837 0.99561 0.98088 1.60379 1.02921 1.28680 1.39008 1.21946 0.93119 0.98695 0.92448 1.20154 0.95882 0.98733 0.91644 0.89345 1.22183 0.82903 0.97047 0.96876 1.86451 1.26929 1.70117 1.54622 1.19788 0.95717 0.95362 0.96429 1.20849 0.99684 0.94804 0.95189 1.21107 0.96338 1.01759 0.97882 1.17725 0.94858 0.93801 0.86629 1.91491 1.84798 1.82931 1.52978 1.21140 1.01858 0.95480 0.98545 1.20947 0.94847 0.99715 0.94286 0.93742 0.90460 0.97464 0.95205 0.99485 0.92934 0.95178 0.92197 0.79494 0.94543 0.90971 0.83546 0.94474 0.90727 0.91034 0.94053 0.77499 0.85170 0.84873 0.84822 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.37 60.06 0.56 1.28 16 2 N -0.53 -11.26 4.56 -244.36 -1.11 -12.37 16 3 C 0.19 5.00 4.55 -4.97 -0.02 4.98 16 4 C -0.50 -14.26 8.39 -34.44 -0.29 -14.55 16 5 H 0.06 1.77 7.17 -52.48 -0.38 1.39 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.03 0.43 4.66 -3.82 -0.02 0.41 16 13 C 0.12 1.82 3.24 -26.73 -0.09 1.74 16 14 H 0.10 1.82 6.78 -51.93 -0.35 1.46 16 15 O -0.53 -8.59 13.08 -35.23 -0.46 -9.06 16 16 C 0.03 0.32 5.35 -3.83 -0.02 0.30 16 17 N -0.68 -7.11 5.74 -113.79 -0.65 -7.77 16 18 C 0.07 0.58 4.82 -3.83 -0.02 0.56 16 19 C -0.05 -0.39 2.41 -91.77 -0.22 -0.61 16 20 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 21 C 0.09 0.75 6.26 37.16 0.23 0.98 16 22 O -0.58 -5.31 13.41 -35.23 -0.47 -5.79 16 23 C -0.07 -0.63 4.55 -104.62 -0.48 -1.10 16 24 C -0.09 -0.70 8.70 -39.59 -0.34 -1.04 16 25 C -0.15 -1.26 10.03 -39.51 -0.40 -1.66 16 26 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 27 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 28 C -0.15 -1.32 10.03 -39.52 -0.40 -1.71 16 29 C -0.08 -0.69 9.67 -39.59 -0.38 -1.08 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.62 6.67 -51.93 -0.35 1.27 16 32 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 33 H 0.03 0.82 6.63 -51.93 -0.34 0.48 16 34 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 37 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 38 H 0.36 4.51 9.05 45.56 0.41 4.92 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.35 3.84 8.73 -39.29 -0.34 3.50 16 42 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.59 7.58 -51.93 -0.39 0.20 16 44 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 45 H 0.04 0.31 7.21 -51.93 -0.37 -0.06 16 46 H 0.38 2.00 9.12 45.56 0.42 2.42 16 47 H 0.13 0.82 7.13 -52.49 -0.37 0.45 16 48 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 49 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 50 H 0.13 0.98 7.94 -52.48 -0.42 0.56 16 LS Contribution 411.65 15.07 6.20 6.20 Total: -1.00 -32.99 411.65 -9.65 -42.64 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.64 Total: 6.30 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.26 Total: -9.51 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.03 Total: -46.15 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.93 Total: -14.84 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.99 -9.65 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583812721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.384 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds