Wall clock time and date at job start Sat Apr 11 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00017 * 2 1 4 4 C 1.50707 * 109.47040 * 66.04483 * 3 2 1 5 5 H 1.08003 * 119.99506 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00268 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99814 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99943 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47066 * 60.00128 * 8 6 4 10 10 H 1.48501 * 109.46786 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46899 * 300.00007 * 8 6 4 12 12 C 1.46904 * 111.00147 * 236.04876 * 2 1 3 13 13 C 1.53003 * 109.47074 * 199.84632 * 12 2 1 14 14 H 1.08998 * 109.46919 * 300.46351 * 13 12 2 15 15 O 1.42895 * 109.46858 * 60.46357 * 13 12 2 16 16 C 1.53002 * 109.46855 * 180.46177 * 13 12 2 17 17 N 1.46895 * 109.47007 * 179.97438 * 16 13 12 18 18 C 1.46895 * 110.99976 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47157 * 180.02562 * 18 17 16 20 20 H 1.08995 * 109.47484 * 305.00050 * 19 18 17 21 21 C 1.53001 * 109.47139 * 65.00175 * 19 18 17 22 22 O 1.42900 * 109.47271 * 184.99898 * 21 19 18 23 23 C 1.50704 * 109.47383 * 184.99791 * 19 18 17 24 24 C 1.38241 * 119.97317 * 299.72870 * 23 19 18 25 25 C 1.38207 * 120.02532 * 179.72378 * 24 23 19 26 26 C 1.38459 * 119.97097 * 0.52431 * 25 24 23 27 27 F 1.35096 * 120.02699 * 179.72968 * 26 25 24 28 28 C 1.38463 * 119.94854 * 359.74922 * 26 25 24 29 29 C 1.38192 * 119.97541 * 359.97438 * 28 26 25 30 30 H 1.09006 * 109.47216 * 188.77646 * 1 2 3 31 31 H 1.09004 * 109.47491 * 308.76749 * 1 2 3 32 32 H 1.08999 * 109.47381 * 68.77678 * 1 2 3 33 33 H 1.08993 * 109.47849 * 186.04708 * 3 2 1 34 34 H 1.08998 * 109.46977 * 306.05391 * 3 2 1 35 35 H 0.97003 * 119.99632 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47125 * 79.84898 * 12 2 1 37 37 H 1.09000 * 109.46943 * 319.84879 * 12 2 1 38 38 H 0.96703 * 114.00118 * 59.99867 * 15 13 12 39 39 H 1.09003 * 109.46873 * 60.00269 * 16 13 12 40 40 H 1.09000 * 109.47386 * 300.00594 * 16 13 12 41 41 H 1.00900 * 111.00611 * 303.95637 * 17 16 13 42 42 H 1.08996 * 109.47463 * 60.00104 * 18 17 16 43 43 H 1.09000 * 109.47097 * 300.00164 * 18 17 16 44 44 H 1.09005 * 109.47005 * 304.99782 * 21 19 18 45 45 H 1.08995 * 109.47336 * 65.00018 * 21 19 18 46 46 H 0.96697 * 114.00092 * 179.97438 * 22 21 19 47 47 H 1.07997 * 119.98953 * 359.97438 * 24 23 19 48 48 H 1.08001 * 120.01101 * 180.29906 * 25 24 23 49 49 H 1.08003 * 120.01266 * 179.97438 * 28 26 25 50 50 H 1.08003 * 119.99126 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0745 1.5112 2.0488 6 6 2.0275 3.3491 1.5290 7 7 2.7127 4.0016 0.6155 8 14 1.5836 4.1864 3.1388 9 1 2.1754 3.4285 4.2705 10 1 2.1157 5.5728 3.1388 11 1 0.1064 4.2235 3.2865 12 6 1.9954 -0.7659 -1.1376 13 6 3.4449 -1.1665 -0.8557 14 1 4.0463 -0.2704 -0.7028 15 8 3.4946 -1.9796 0.3183 16 6 3.9969 -1.9544 -2.0455 17 7 5.3887 -2.3384 -1.7751 18 6 5.9531 -3.0978 -2.8988 19 6 7.4001 -3.4797 -2.5807 20 1 7.9671 -2.5820 -2.3344 21 6 7.4240 -4.4406 -1.3903 22 8 8.7783 -4.7059 -1.0194 23 6 8.0179 -4.1508 -3.7803 24 6 7.4701 -5.3190 -4.2765 25 6 8.0324 -5.9322 -5.3801 26 6 9.1513 -5.3820 -5.9820 27 9 9.7052 -5.9834 -7.0575 28 6 9.7025 -4.2149 -5.4806 29 6 9.1351 -3.6004 -4.3805 30 1 -0.3634 -1.0157 0.1568 31 1 -0.3634 0.6435 0.8013 32 1 -0.3634 0.3720 -0.9579 33 1 3.0796 1.3445 -0.1082 34 1 1.5609 1.9274 -0.8308 35 1 2.9873 4.9177 0.7776 36 1 1.9565 -0.1525 -2.0378 37 1 1.3923 -1.6623 -1.2824 38 1 2.9804 -2.7960 0.2534 39 1 3.9590 -1.3341 -2.9410 40 1 3.3954 -2.8504 -2.1985 41 1 5.9534 -1.5287 -1.5665 42 1 5.9284 -2.4853 -3.8001 43 1 5.3656 -4.0020 -3.0578 44 1 6.8985 -3.9894 -0.5485 45 1 6.9336 -5.3739 -1.6667 46 1 8.8697 -5.3090 -0.2691 47 1 6.6001 -5.7504 -3.8042 48 1 7.6014 -6.8423 -5.7705 49 1 10.5755 -3.7850 -5.9491 50 1 9.5650 -2.6903 -3.9890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583812721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:28 Heat of formation + Delta-G solvation = -145.766110 kcal Electronic energy + Delta-G solvation = -29008.706947 eV Core-core repulsion = 24755.963490 eV Total energy + Delta-G solvation = -4252.743457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.89745 -40.59457 -39.46405 -38.04913 -37.26809 -36.23615 -34.58678 -33.80463 -32.10357 -31.10171 -29.54117 -29.10779 -27.17740 -25.78295 -24.81018 -24.24267 -23.41463 -22.78717 -21.71052 -21.07585 -18.69804 -18.58649 -18.22826 -17.62704 -17.38553 -16.98588 -16.73133 -16.62029 -16.58906 -16.23022 -15.90723 -15.70450 -15.41998 -15.19240 -14.88424 -14.70456 -14.44038 -14.39245 -14.20515 -14.03186 -13.93329 -13.68829 -13.25466 -13.14820 -12.92520 -12.77409 -12.57593 -12.56104 -12.42334 -12.34554 -12.29194 -12.11031 -12.05879 -11.57215 -11.48408 -11.31543 -10.77964 -10.64228 -10.59296 -10.05274 -9.51368 -9.33281 -8.92081 -8.19760 -6.28885 0.15667 0.28686 1.40695 1.44386 1.52008 2.40977 2.59541 2.93589 3.12763 3.29497 3.32615 3.43283 3.74878 3.79639 3.85470 3.97513 4.00025 4.14116 4.24796 4.26052 4.33417 4.39336 4.44388 4.49823 4.55339 4.58978 4.63244 4.70160 4.78823 4.80362 4.82090 4.92252 4.96335 5.07798 5.10136 5.11598 5.15486 5.17096 5.26785 5.29908 5.31738 5.60349 5.65726 5.93143 6.01567 6.08802 6.32879 6.37284 6.67593 6.86978 6.97262 7.19856 7.40312 8.90995 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.001796 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.375495 B =15590.542200 C =15841.991010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.541 5.541 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.025 3.975 13 C 0.127 3.873 14 H 0.057 0.943 15 O -0.550 6.550 16 C 0.043 3.957 17 N -0.683 5.683 18 C 0.074 3.926 19 C -0.041 4.041 20 H 0.076 0.924 21 C 0.091 3.909 22 O -0.594 6.594 23 C -0.077 4.077 24 C -0.087 4.087 25 C -0.153 4.153 26 C 0.069 3.931 27 F -0.152 7.152 28 C -0.157 4.157 29 C -0.092 4.092 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.011 0.989 33 H 0.004 0.996 34 H -0.043 1.043 35 H 0.264 0.736 36 H 0.025 0.975 37 H 0.097 0.903 38 H 0.378 0.622 39 H 0.037 0.963 40 H 0.097 0.903 41 H 0.339 0.661 42 H 0.036 0.964 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.394 0.606 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.144 0.856 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.291 -22.436 -11.540 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.084 3.916 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.104 4.104 13 C 0.067 3.933 14 H 0.075 0.925 15 O -0.355 6.355 16 C -0.087 4.087 17 N -0.313 5.313 18 C -0.055 4.055 19 C -0.060 4.060 20 H 0.095 0.905 21 C 0.014 3.986 22 O -0.402 6.402 23 C -0.078 4.078 24 C -0.105 4.105 25 C -0.172 4.172 26 C 0.050 3.950 27 F -0.130 7.130 28 C -0.176 4.176 29 C -0.110 4.110 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.022 0.978 34 H -0.025 1.025 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.225 0.775 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.157 0.843 42 H 0.054 0.946 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.243 0.757 47 H 0.169 0.831 48 H 0.168 0.832 49 H 0.162 0.838 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.855 -22.203 -11.119 26.716 hybrid contribution -0.408 1.272 -0.861 1.589 sum 9.448 -20.931 -11.980 25.902 Atomic orbital electron populations 1.22248 0.87575 1.01754 0.99373 1.61936 1.07810 1.14992 1.41784 1.19360 0.93693 0.83991 0.94559 1.21462 1.34704 0.97421 1.02518 0.92090 1.25918 0.95109 0.98138 1.00689 1.70075 1.39418 1.11852 1.36176 0.85452 0.78859 0.77125 0.79284 1.19498 1.20839 1.19127 1.22818 0.97372 0.98592 0.91626 1.21620 0.93791 0.92536 0.85377 0.92458 1.86638 1.74174 1.36693 1.38011 1.22514 0.90501 0.99890 0.95833 1.60394 1.02513 1.28431 1.40003 1.21931 0.93174 0.98845 0.91527 1.20078 0.95698 0.98361 0.91816 0.90523 1.22141 0.82666 0.97522 0.96296 1.86415 1.27331 1.70824 1.55624 1.19875 0.95794 0.95758 0.96390 1.21068 1.00120 0.94370 0.94960 1.21349 0.95824 1.02251 0.97732 1.17986 0.95701 0.94389 0.86918 1.91466 1.85036 1.83108 1.53436 1.21305 1.02259 0.95429 0.98585 1.21115 0.95207 1.00173 0.94487 0.89961 0.92798 0.97056 0.97818 1.02508 0.92765 0.95690 0.88460 0.77455 0.94437 0.88487 0.84336 0.94605 0.89185 0.92227 0.92555 0.75707 0.83138 0.83150 0.83781 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 9.37 127.69 1.20 2.64 16 2 N -0.54 -22.90 4.56 -927.03 -4.22 -27.12 16 3 C 0.21 11.28 4.55 85.56 0.39 11.67 16 4 C -0.52 -30.15 8.39 25.60 0.21 -29.94 16 5 H 0.06 3.46 7.17 -2.91 -0.02 3.44 16 6 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 7 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 8 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 C 0.03 0.80 4.66 86.30 0.40 1.21 16 13 C 0.13 3.84 3.24 30.60 0.10 3.94 16 14 H 0.06 2.22 6.78 -2.39 -0.02 2.20 16 15 O -0.55 -17.24 13.08 -148.98 -1.95 -19.19 16 16 C 0.04 0.89 5.35 86.30 0.46 1.35 16 17 N -0.68 -13.52 5.74 -513.91 -2.95 -16.47 16 18 C 0.07 1.14 4.82 86.30 0.42 1.55 16 19 C -0.04 -0.65 2.41 -11.54 -0.03 -0.68 16 20 H 0.08 1.40 7.87 -2.39 -0.02 1.38 16 21 C 0.09 1.43 6.26 71.98 0.45 1.88 16 22 O -0.59 -10.28 13.41 -148.98 -2.00 -12.28 16 23 C -0.08 -1.24 4.55 -19.86 -0.09 -1.33 16 24 C -0.09 -1.21 8.70 22.26 0.19 -1.01 16 25 C -0.15 -2.28 10.03 22.32 0.22 -2.06 16 26 C 0.07 1.25 7.30 22.38 0.16 1.41 16 27 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 28 C -0.16 -2.65 10.03 22.31 0.22 -2.43 16 29 C -0.09 -1.54 9.67 22.26 0.22 -1.32 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.05 2.24 6.67 -2.38 -0.02 2.22 16 32 H 0.01 0.40 8.13 -2.39 -0.02 0.38 16 33 H 0.00 0.22 6.63 -2.39 -0.02 0.20 16 34 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 37 H 0.10 2.41 7.94 -2.39 -0.02 2.39 16 38 H 0.38 8.52 9.05 -74.06 -0.67 7.85 16 39 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.34 7.58 8.73 -89.69 -0.78 6.79 16 42 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 1.13 7.58 -2.39 -0.02 1.11 16 44 H 0.06 1.08 7.62 -2.38 -0.02 1.06 16 45 H 0.06 0.71 7.21 -2.39 -0.02 0.69 16 46 H 0.39 3.68 9.12 -74.06 -0.68 3.01 16 47 H 0.15 1.41 7.13 -2.91 -0.02 1.38 16 48 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 50 H 0.14 2.03 7.94 -2.91 -0.02 2.01 16 Total: -1.00 -72.42 411.65 -4.21 -76.63 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -1.16 Total: 22.96 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.99 Total: -12.71 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -6.89 Total: -100.12 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -3.95 Total: -31.47 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.42 -4.21 -76.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583812721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.138 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds