Wall clock time and date at job start Sat Apr 11 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81402 * 103.00313 * 2 1 4 4 H 1.08999 * 110.38822 * 52.76778 * 3 2 1 5 5 C 1.54630 * 110.42091 * 290.44034 * 3 2 1 6 6 N 1.48140 * 104.66173 * 217.36310 * 5 3 2 7 7 C 1.34778 * 127.83934 * 219.56661 * 6 5 3 8 8 O 1.21273 * 120.00095 * 179.97438 * 7 6 5 9 9 C 1.50696 * 119.99759 * 359.97438 * 7 6 5 10 10 C 1.53001 * 109.47204 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46957 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00408 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99941 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99585 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00054 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47230 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47239 * 119.99987 * 17 15 13 20 20 H 1.48499 * 109.47614 * 240.00298 * 17 15 13 21 21 C 1.48148 * 104.32262 * 39.54778 * 6 5 3 22 22 C 1.54286 * 110.34368 * 175.00060 * 3 2 1 23 23 H 1.08993 * 110.34390 * 237.73819 * 22 3 2 24 24 N 1.46900 * 110.34420 * 359.89563 * 22 3 2 25 25 C 1.48524 * 111.00077 * 165.55419 * 24 22 3 26 26 C 1.54940 * 103.22840 * 159.71946 * 25 24 22 27 27 C 1.54594 * 102.92135 * 322.58274 * 26 25 24 28 28 C 1.47904 * 110.99690 * 282.94980 * 24 22 3 29 29 H 1.09001 * 109.46871 * 59.99696 * 1 2 3 30 30 H 1.08997 * 109.47572 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47021 * 300.00465 * 1 2 3 32 32 H 1.09004 * 110.41517 * 98.54728 * 5 3 2 33 33 H 1.09000 * 110.35256 * 336.14911 * 5 3 2 34 34 H 1.09005 * 109.47529 * 299.99811 * 9 7 6 35 35 H 1.08998 * 109.47338 * 59.99624 * 9 7 6 36 36 H 1.09005 * 109.47359 * 300.00105 * 10 9 7 37 37 H 1.08998 * 109.47065 * 59.99720 * 10 9 7 38 38 H 1.09003 * 109.46682 * 299.99789 * 11 10 9 39 39 H 1.08998 * 109.47338 * 59.99787 * 11 10 9 40 40 H 1.09004 * 109.46608 * 299.99734 * 12 11 10 41 41 H 1.08998 * 109.47330 * 59.99610 * 12 11 10 42 42 H 0.97006 * 119.99600 * 180.02562 * 16 15 13 43 43 H 1.08999 * 110.40476 * 201.62908 * 21 6 5 44 44 H 1.09004 * 110.50466 * 79.25401 * 21 6 5 45 45 H 1.09004 * 110.66906 * 278.15218 * 25 24 22 46 46 H 1.09001 * 110.67222 * 41.28613 * 25 24 22 47 47 H 1.09004 * 110.72758 * 204.22517 * 26 25 24 48 48 H 1.08996 * 110.88080 * 81.01452 * 26 25 24 49 49 H 1.08997 * 110.31285 * 263.04496 * 27 26 25 50 50 H 1.09003 * 110.39149 * 140.91472 * 27 26 25 51 51 H 1.09002 * 109.91570 * 333.50712 * 28 24 22 52 52 H 1.08998 * 109.92121 * 94.80089 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7052 2.2766 0.8135 5 6 1.8504 2.4071 -1.3579 6 7 2.9298 3.3877 -1.6185 7 6 2.8155 4.6217 -2.1482 8 8 3.8022 5.3104 -2.2994 9 6 1.4617 5.1456 -2.5527 10 6 1.6103 6.5587 -3.1202 11 6 0.2357 7.0909 -3.5302 12 6 0.3845 8.5038 -4.0983 13 6 -0.9693 9.0277 -4.5027 14 1 -1.8480 8.4142 -4.3685 15 6 -1.0863 10.2903 -5.0442 16 7 -0.0163 11.0371 -5.2081 17 14 -2.7644 10.9394 -5.5462 18 1 -3.7982 9.9122 -5.2610 19 1 -3.0681 12.1733 -4.7776 20 1 -2.7612 11.2492 -6.9985 21 6 4.1632 2.7043 -1.1642 22 6 3.7469 1.9659 0.1261 23 1 3.9791 2.5724 1.0014 24 7 4.4257 0.6659 0.2120 25 6 5.8864 0.8122 -0.0135 26 6 6.4732 -0.4759 0.6166 27 6 5.5827 -0.6880 1.8624 28 6 4.2828 0.0818 1.5633 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.8867 2.9118 -1.2893 33 1 1.8285 1.6489 -2.1407 34 1 1.0311 4.4923 -3.3117 35 1 0.8069 5.1713 -1.6816 36 1 2.0406 7.2118 -2.3609 37 1 2.2652 6.5334 -3.9911 38 1 -0.1950 6.4379 -4.2894 39 1 -0.4188 7.1162 -2.6590 40 1 0.8154 9.1569 -3.3394 41 1 1.0389 8.4780 -4.9696 42 1 -0.0987 11.9256 -5.5887 43 1 4.9446 3.4334 -0.9497 44 1 4.5046 1.9928 -1.9162 45 1 6.1087 0.8545 -1.0798 46 1 6.2676 1.6975 0.4954 47 1 7.5128 -0.3243 0.9070 48 1 6.3847 -1.3188 -0.0687 49 1 6.0685 -0.2800 2.7487 50 1 5.3709 -1.7481 2.0019 51 1 4.1436 0.8750 2.2979 52 1 3.4335 -0.6011 1.5848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588678011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:50 Heat of formation + Delta-G solvation = -57.355412 kcal Electronic energy + Delta-G solvation = -27456.128918 eV Core-core repulsion = 23773.432413 eV Total energy + Delta-G solvation = -3682.696505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37407 -40.02128 -38.00585 -36.63699 -34.64403 -33.62440 -31.59372 -31.32053 -30.01281 -29.36583 -28.79275 -27.30980 -25.33167 -23.77583 -22.91523 -21.86082 -21.57459 -21.18072 -20.13567 -18.45456 -18.22335 -18.11876 -17.10574 -16.85244 -16.70912 -16.42133 -16.23791 -15.78943 -15.60699 -15.12745 -14.75664 -14.59396 -14.53610 -14.26313 -14.00909 -13.90186 -13.70638 -13.63857 -13.37557 -13.31654 -13.24910 -13.14601 -12.85656 -12.44570 -12.31817 -12.22333 -12.18456 -12.13614 -12.09136 -12.08513 -11.94900 -11.43350 -11.40010 -11.37183 -11.18156 -10.87456 -10.56241 -10.52067 -9.92849 -9.47914 -8.34301 -8.19226 -6.31285 0.73914 1.40125 1.41077 1.51589 1.54499 1.69688 1.91485 2.41476 2.92658 3.13571 3.21115 3.31928 3.64277 3.76342 3.89551 3.96674 3.99835 4.04440 4.09896 4.17911 4.24017 4.36332 4.40591 4.48298 4.49378 4.58092 4.60533 4.62520 4.66612 4.69779 4.77183 4.78135 4.80095 4.84463 4.96317 5.03588 5.06012 5.07346 5.14288 5.16111 5.26014 5.32199 5.35495 5.36641 5.55853 5.77089 5.87437 5.90492 5.97494 6.24721 6.39115 6.87345 7.04878 7.38304 8.93214 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.001889 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.512641 B =14819.278679 C =15908.099297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.184 6.184 3 C -0.071 4.071 4 H 0.104 0.896 5 C 0.108 3.892 6 N -0.624 5.624 7 C 0.533 3.467 8 O -0.585 6.585 9 C -0.122 4.122 10 C -0.095 4.095 11 C -0.094 4.094 12 C 0.018 3.982 13 C -0.540 4.540 14 H 0.067 0.933 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.970 3.030 18 H -0.257 1.257 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.113 3.887 22 C 0.089 3.911 23 H 0.061 0.939 24 N -0.502 5.502 25 C 0.027 3.973 26 C -0.118 4.118 27 C -0.129 4.129 28 C 0.032 3.968 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.062 0.938 40 H -0.015 1.015 41 H -0.015 1.015 42 H 0.263 0.737 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.040 0.960 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -31.555 16.894 36.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.043 5.957 3 C -0.201 4.201 4 H 0.122 0.878 5 C -0.016 4.016 6 N -0.358 5.358 7 C 0.324 3.676 8 O -0.464 6.464 9 C -0.161 4.161 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.019 4.019 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.794 3.206 18 H -0.180 1.180 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.011 4.011 22 C -0.022 4.022 23 H 0.079 0.921 24 N -0.226 5.226 25 C -0.100 4.100 26 C -0.156 4.156 27 C -0.167 4.167 28 C -0.096 4.096 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.062 0.938 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.059 0.941 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.352 -32.144 16.327 36.794 hybrid contribution -0.767 2.650 0.186 2.765 sum 6.585 -29.494 16.513 34.437 Atomic orbital electron populations 1.23695 0.96328 1.06955 1.05364 1.87475 1.04649 1.06293 1.97280 1.24302 0.98351 0.96985 1.00511 0.87784 1.23144 0.91581 0.91294 0.95623 1.48991 1.10441 1.14209 1.62148 1.20914 0.91989 0.79073 0.75591 1.90702 1.41609 1.57794 1.56344 1.21650 0.93171 0.97200 1.04079 1.21256 0.97408 0.94845 0.99851 1.21439 0.95464 0.96172 1.00120 1.19066 0.95562 0.93145 0.94158 1.21779 0.94685 1.00605 1.40725 0.91509 1.26108 1.01083 0.97476 0.95872 1.70143 1.30966 1.10607 1.46109 0.85323 0.79119 0.78354 0.77771 1.18039 1.20500 1.20503 1.22345 0.87906 0.95200 0.95627 1.22430 0.92170 0.90623 0.97014 0.92076 1.64856 1.09978 1.19559 1.28251 1.23320 0.87226 0.97953 1.01516 1.22434 0.99179 0.97008 0.96976 1.22419 0.94827 1.01329 0.98125 1.23192 0.99752 0.98753 0.87917 0.90071 0.87603 0.90255 0.87814 0.88772 0.86494 0.86440 0.93783 0.93808 0.92006 0.91969 0.99687 0.99701 0.92875 0.91396 0.89679 0.90005 0.93848 0.90133 0.90724 0.91143 0.90278 0.94116 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.70 113.37 1.21 -0.08 16 2 S -0.18 -2.30 17.47 -56.49 -0.99 -3.29 16 3 C -0.07 -0.93 3.50 31.59 0.11 -0.82 16 4 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 5 C 0.11 1.53 6.43 86.62 0.56 2.08 16 6 N -0.62 -13.36 3.32 -807.50 -2.68 -16.04 16 7 C 0.53 15.40 7.91 87.66 0.69 16.10 16 8 O -0.58 -22.74 16.25 -3.01 -0.05 -22.79 16 9 C -0.12 -3.11 4.68 29.85 0.14 -2.97 16 10 C -0.10 -3.49 4.50 30.59 0.14 -3.35 16 11 C -0.09 -3.86 5.15 30.60 0.16 -3.70 16 12 C 0.02 0.98 4.97 29.85 0.15 1.13 16 13 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 14 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 15 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 16 N -0.94 -59.23 13.29 21.45 0.28 -58.95 16 17 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 C 0.11 2.20 5.68 86.53 0.49 2.69 16 22 C 0.09 1.35 2.65 45.82 0.12 1.47 16 23 H 0.06 0.99 7.71 -2.39 -0.02 0.97 16 24 N -0.50 -7.01 3.92 -852.58 -3.35 -10.35 16 25 C 0.03 0.35 5.48 86.65 0.48 0.83 16 26 C -0.12 -1.19 7.06 31.80 0.22 -0.96 16 27 C -0.13 -1.24 6.93 31.47 0.22 -1.02 16 28 C 0.03 0.38 5.74 86.45 0.50 0.88 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 1.11 7.30 -2.38 -0.02 1.09 16 33 H 0.09 1.29 7.83 -2.39 -0.02 1.28 16 34 H 0.12 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.12 2.37 7.95 -2.39 -0.02 2.36 16 36 H 0.04 1.76 8.10 -2.38 -0.02 1.74 16 37 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 43 H 0.07 1.56 7.88 -2.39 -0.02 1.54 16 44 H 0.09 1.64 7.26 -2.39 -0.02 1.62 16 45 H 0.08 1.10 7.43 -2.38 -0.02 1.09 16 46 H 0.04 0.59 8.02 -2.39 -0.02 0.57 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.04 0.50 7.51 -2.39 -0.02 0.49 16 52 H 0.10 1.28 6.03 -3.88 -0.02 1.25 16 Total: -1.00 -74.62 414.08 1.98 -72.64 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.85 Total: 10.75 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 5.88 Total: -18.89 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -5.74 Total: -85.34 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -0.99 Total: -3.29 kcal Total: -74.62 1.98 -72.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588678011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.288 kcal (2) G-P(sol) polarization free energy of solvation -74.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds