Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00517 * 2 1 4 4 C 1.50696 * 109.47261 * 179.97438 * 3 2 1 5 5 C 1.38219 * 120.01522 * 359.72873 * 4 3 2 6 6 C 1.38218 * 120.02685 * 179.72430 * 5 4 3 7 7 C 1.50695 * 119.97354 * 180.27119 * 6 5 4 8 8 N 1.46902 * 109.47534 * 270.27176 * 7 6 5 9 9 C 1.46902 * 111.00490 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46918 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47610 * 304.99822 * 10 9 8 12 12 O 1.42896 * 109.47409 * 65.00382 * 10 9 8 13 13 C 1.53008 * 109.46969 * 185.00256 * 10 9 8 14 14 N 1.46898 * 109.47224 * 178.51006 * 13 10 9 15 15 C 1.46897 * 110.99893 * 164.00854 * 14 13 10 16 16 C 1.46897 * 111.00142 * 287.96639 * 14 13 10 17 17 C 1.50696 * 109.47391 * 170.00162 * 16 14 13 18 18 H 1.08005 * 119.99715 * 359.97438 * 17 16 14 19 19 C 1.37876 * 120.00317 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99701 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00168 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47526 * 89.99574 * 21 19 17 23 23 H 1.48499 * 109.47402 * 210.00274 * 21 19 17 24 24 H 1.48506 * 109.47071 * 329.99871 * 21 19 17 25 25 C 1.38267 * 120.04921 * 0.54813 * 6 5 4 26 26 C 1.38177 * 120.02627 * 359.72026 * 25 6 5 27 27 C 1.38440 * 120.01223 * 179.97438 * 4 3 2 28 28 F 1.35095 * 120.02504 * 0.02562 * 27 4 3 29 29 H 1.08993 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46756 * 300.00573 * 1 2 3 31 31 H 1.09005 * 109.46923 * 59.99969 * 1 2 3 32 32 H 1.09007 * 109.46838 * 299.99881 * 3 2 1 33 33 H 1.09002 * 109.47050 * 59.99440 * 3 2 1 34 34 H 1.08004 * 119.98178 * 359.97438 * 5 4 3 35 35 H 1.08994 * 109.47705 * 30.27235 * 7 6 5 36 36 H 1.09004 * 109.47563 * 150.27589 * 7 6 5 37 37 H 1.00901 * 110.99709 * 303.95966 * 8 7 6 38 38 H 1.08996 * 109.46977 * 300.00514 * 9 8 7 39 39 H 1.09006 * 109.46337 * 60.00485 * 9 8 7 40 40 H 0.96706 * 114.00156 * 59.99216 * 12 10 9 41 41 H 1.09001 * 109.46723 * 298.51536 * 13 10 9 42 42 H 1.08996 * 109.46749 * 58.50726 * 13 10 9 43 43 H 1.08996 * 109.47327 * 65.48690 * 15 14 13 44 44 H 1.09004 * 109.47076 * 185.48871 * 15 14 13 45 45 H 1.08995 * 109.47504 * 305.48601 * 15 14 13 46 46 H 1.09004 * 109.46507 * 289.99894 * 16 14 13 47 47 H 1.09001 * 109.47481 * 49.99749 * 16 14 13 48 48 H 0.97001 * 119.99439 * 180.02562 * 20 19 17 49 49 H 1.08004 * 119.98942 * 179.75139 * 25 6 5 50 50 H 1.08005 * 120.00970 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1073 -0.0614 0.0068 6 6 5.4851 -0.1710 0.0016 7 6 6.1321 -1.5319 0.0021 8 7 6.3420 -1.9740 1.3873 9 6 6.9719 -3.3004 1.4270 10 6 7.1744 -3.7254 2.8827 11 1 7.7423 -2.9587 3.4095 12 8 5.9021 -3.8923 3.5116 13 6 7.9419 -5.0484 2.9257 14 7 8.1675 -5.4384 4.3239 15 6 8.5514 -6.8530 4.4204 16 6 9.1745 -4.5753 4.9554 17 6 9.2029 -4.8387 6.4389 18 1 8.5388 -5.5735 6.8696 19 6 10.0765 -4.1416 7.2463 20 7 10.8855 -3.2472 6.7216 21 14 10.1111 -4.4676 9.0852 22 1 11.0900 -5.5450 9.3787 23 1 10.5095 -3.2285 9.8002 24 1 8.7612 -4.8885 9.5389 25 6 6.2701 0.9672 0.0017 26 6 5.6779 2.2156 0.0012 27 6 4.2976 2.3266 0.0002 28 9 3.7175 3.5466 -0.0002 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 -0.8901 33 1 1.6887 1.8463 0.8899 34 1 3.4950 -0.9511 0.0115 35 1 5.4847 -2.2424 -0.5117 36 1 7.0922 -1.4781 -0.5113 37 1 6.8862 -1.2992 1.9036 38 1 6.3299 -4.0228 0.9230 39 1 7.9377 -3.2591 0.9232 40 1 5.3417 -4.5609 3.0944 41 1 7.3618 -5.8215 2.4218 42 1 8.9014 -4.9282 2.4227 43 1 9.5195 -7.0003 3.9418 44 1 8.6173 -7.1408 5.4697 45 1 7.8022 -7.4677 3.9215 46 1 10.1548 -4.7894 4.5295 47 1 8.9211 -3.5303 4.7766 48 1 11.5003 -2.7571 7.2896 49 1 7.3467 0.8805 0.0017 50 1 6.2914 3.1045 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591736461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -133.956435 kcal Electronic energy + Delta-G solvation = -28963.735816 eV Core-core repulsion = 24711.504466 eV Total energy + Delta-G solvation = -4252.231351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.96989 -40.53965 -39.47881 -38.67757 -37.36088 -36.09877 -34.59070 -33.19104 -32.39338 -30.63614 -29.30026 -28.27641 -27.48064 -26.48773 -25.82567 -24.60539 -23.31134 -22.83827 -21.86467 -21.48992 -18.67590 -18.59720 -17.99670 -17.70576 -17.15352 -16.95075 -16.85025 -16.57189 -16.48157 -16.39032 -16.16217 -15.77792 -15.69450 -15.26996 -15.05195 -14.95765 -14.81315 -14.28896 -14.15422 -13.93472 -13.86812 -13.67781 -13.31098 -13.10768 -12.95223 -12.79800 -12.65368 -12.58668 -12.53986 -12.45078 -12.30100 -12.14305 -12.09794 -11.92623 -11.47633 -11.29551 -10.86616 -10.66443 -10.59399 -9.88033 -9.61355 -9.26713 -8.92310 -8.19914 -6.28687 0.05653 0.25082 1.39875 1.42030 1.53656 2.40813 2.46933 2.64784 3.08388 3.13452 3.24475 3.52750 3.60652 3.75526 3.85542 3.88529 3.98881 4.14125 4.24048 4.27793 4.31935 4.38361 4.40589 4.49353 4.52242 4.56702 4.56950 4.59119 4.64444 4.70120 4.78519 4.80238 4.86918 4.96057 5.03201 5.09278 5.13694 5.14183 5.26776 5.28248 5.32696 5.53732 5.66051 5.86920 6.04174 6.09205 6.14265 6.33573 6.37678 6.67849 6.87148 7.17940 7.40467 8.91199 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012392 B = 0.002020 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.050279 B =13855.923089 C =14408.211825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.107 3.893 4 C -0.138 4.138 5 C -0.055 4.055 6 C -0.095 4.095 7 C 0.104 3.896 8 N -0.686 5.686 9 C 0.043 3.957 10 C 0.125 3.875 11 H 0.059 0.941 12 O -0.554 6.554 13 C 0.026 3.974 14 N -0.544 5.544 15 C 0.042 3.958 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.267 1.267 25 C -0.087 4.087 26 C -0.153 4.153 27 C 0.085 3.915 28 F -0.144 7.144 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.339 0.661 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.378 0.622 41 H 0.098 0.902 42 H 0.027 0.973 43 H 0.008 0.992 44 H 0.053 0.947 45 H 0.083 0.917 46 H -0.041 1.041 47 H 0.005 0.995 48 H 0.264 0.736 49 H 0.149 0.851 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.296 7.237 -20.758 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.031 3.969 4 C -0.138 4.138 5 C -0.073 4.073 6 C -0.095 4.095 7 C -0.025 4.025 8 N -0.317 5.317 9 C -0.087 4.087 10 C 0.064 3.936 11 H 0.077 0.923 12 O -0.359 6.359 13 C -0.103 4.103 14 N -0.268 5.268 15 C -0.107 4.107 16 C 0.084 3.916 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.192 1.192 25 C -0.105 4.105 26 C -0.172 4.172 27 C 0.066 3.934 28 F -0.123 7.123 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.226 0.774 41 H 0.116 0.884 42 H 0.046 0.954 43 H 0.027 0.973 44 H 0.072 0.928 45 H 0.102 0.898 46 H -0.024 1.024 47 H 0.023 0.977 48 H 0.072 0.928 49 H 0.167 0.833 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.930 7.492 -20.008 27.260 hybrid contribution 1.644 0.402 0.048 1.693 sum -15.287 7.894 -19.960 26.352 Atomic orbital electron populations 1.22962 0.78892 1.04155 1.01040 1.87826 1.21809 1.27160 1.95653 1.21104 0.88696 0.85436 1.01671 1.19871 0.95647 0.92962 1.05365 1.20798 0.94111 0.96799 0.95610 1.20002 0.93541 0.95565 1.00435 1.20883 0.99542 0.92447 0.89583 1.60396 1.54418 1.03849 1.13065 1.22547 0.98351 0.91949 0.95803 1.21683 0.84585 0.95214 0.92102 0.92341 1.86649 1.27440 1.62825 1.59025 1.22811 0.99125 0.98639 0.89703 1.61926 1.46480 1.03546 1.14850 1.22213 0.97990 0.88853 1.01612 1.19376 0.86629 0.91820 0.93808 1.21485 1.19488 1.21753 0.93297 0.92227 1.25904 0.95092 0.94847 1.03961 1.70077 1.23907 1.26151 1.37382 0.85409 0.78665 0.77710 0.79015 1.19601 1.20712 1.19164 1.21206 1.01136 0.90799 0.97406 1.21291 0.92306 1.00132 1.03441 1.17568 0.91779 0.79139 1.04921 1.91464 1.84988 1.41771 1.94080 0.88256 0.93251 0.92654 0.90645 0.91438 0.84338 0.89183 0.92935 0.84365 0.88552 0.93731 0.77449 0.88365 0.95436 0.97339 0.92813 0.89849 1.02383 0.97667 0.92757 0.83313 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.71 9.18 -148.98 -1.37 -9.08 16 3 C 0.11 1.92 5.91 71.23 0.42 2.34 16 4 C -0.14 -2.88 5.89 -19.82 -0.12 -2.99 16 5 C -0.05 -1.16 9.03 22.26 0.20 -0.96 16 6 C -0.09 -1.84 5.39 -19.86 -0.11 -1.95 16 7 C 0.10 1.86 5.81 85.55 0.50 2.36 16 8 N -0.69 -15.95 6.44 -517.94 -3.33 -19.29 16 9 C 0.04 0.99 5.32 86.30 0.46 1.44 16 10 C 0.12 4.00 3.17 30.60 0.10 4.10 16 11 H 0.06 2.38 6.55 -2.39 -0.02 2.36 16 12 O -0.55 -19.03 13.18 -148.98 -1.96 -21.00 16 13 C 0.03 0.87 4.63 86.31 0.40 1.27 16 14 N -0.54 -23.57 4.60 -927.07 -4.27 -27.84 16 15 C 0.04 1.58 9.32 127.69 1.19 2.77 16 16 C 0.21 11.41 4.57 85.56 0.39 11.81 16 17 C -0.52 -30.54 8.53 25.60 0.22 -30.32 16 18 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 19 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 20 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 21 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C -0.09 -1.53 9.70 22.26 0.22 -1.32 16 26 C -0.15 -2.77 10.03 22.31 0.22 -2.55 16 27 C 0.09 1.76 7.25 22.37 0.16 1.92 16 28 F -0.14 -3.03 16.80 44.97 0.76 -2.27 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.14 3.02 7.01 -2.91 -0.02 3.00 16 35 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 36 H 0.05 0.81 8.09 -2.39 -0.02 0.79 16 37 H 0.34 8.60 8.72 -89.69 -0.78 7.82 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.38 9.57 9.05 -74.05 -0.67 8.90 16 41 H 0.10 2.53 7.88 -2.39 -0.02 2.51 16 42 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 43 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 44 H 0.05 2.23 6.90 -2.38 -0.02 2.21 16 45 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 46 H -0.04 -2.43 8.11 -2.39 -0.02 -2.45 16 47 H 0.01 0.31 6.38 -2.39 -0.02 0.30 16 48 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 49 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 50 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -72.39 414.80 -2.41 -74.80 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.51 Total: 24.17 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.96 Total: -10.08 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -7.32 Total: -104.07 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -3.33 Total: -30.08 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.76 Total: -2.27 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.39 -2.41 -74.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.159 kcal (2) G-P(sol) polarization free energy of solvation -72.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds