Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30873 * 125.87535 * 2 1 4 4 N 1.40095 * 108.21839 * 180.02562 * 3 2 1 5 5 C 1.40177 * 126.05491 * 179.97438 * 4 3 2 6 6 C 1.38853 * 120.06641 * 185.02868 * 5 4 3 7 7 C 1.38101 * 119.93461 * 179.97438 * 6 5 4 8 8 C 1.38300 * 120.06644 * 359.97438 * 7 6 5 9 9 C 1.38262 * 120.13375 * 359.97438 * 8 7 6 10 10 C 1.50692 * 119.96892 * 180.02562 * 9 8 7 11 11 C 1.38147 * 120.06455 * 359.78299 * 9 8 7 12 12 C 1.35222 * 107.88801 * 359.77411 * 4 3 2 13 13 C 1.35325 * 107.71652 * 0.36597 * 12 4 3 14 14 C 1.50699 * 126.03547 * 179.89815 * 13 12 4 15 15 N 1.46894 * 109.46979 * 106.47730 * 14 13 12 16 16 C 1.46907 * 110.99854 * 182.91658 * 15 14 13 17 17 C 1.53240 * 109.34009 * 187.25456 * 16 15 14 18 18 N 1.47076 * 108.52241 * 306.17752 * 17 16 15 19 19 C 1.36933 * 120.87816 * 231.18655 * 18 17 16 20 20 H 1.07997 * 120.00591 * 32.09920 * 19 18 17 21 21 C 1.38811 * 119.99998 * 211.82463 * 19 18 17 22 22 N 1.31621 * 119.99875 * 15.68204 * 21 19 18 23 23 Si 1.86807 * 120.00242 * 195.68281 * 21 19 18 24 24 H 1.48497 * 109.47017 * 59.99927 * 23 21 19 25 25 H 1.48499 * 109.47019 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46790 * 299.99641 * 23 21 19 27 27 C 1.47080 * 118.24255 * 51.45331 * 18 17 16 28 28 C 1.46895 * 111.00694 * 307.22220 * 15 14 13 29 29 H 1.09001 * 109.46748 * 274.00293 * 1 2 3 30 30 H 1.09000 * 109.46907 * 33.99883 * 1 2 3 31 31 H 1.08999 * 109.47051 * 154.00350 * 1 2 3 32 32 H 1.08001 * 120.03620 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.96580 * 180.02562 * 7 6 5 34 34 H 1.07997 * 119.93656 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47457 * 89.99405 * 10 9 8 36 36 H 1.08994 * 109.47505 * 209.99748 * 10 9 8 37 37 H 1.09004 * 109.47332 * 329.99730 * 10 9 8 38 38 H 1.07999 * 120.03174 * 180.23571 * 11 9 8 39 39 H 1.08007 * 126.14215 * 180.22602 * 12 4 3 40 40 H 1.09003 * 109.46883 * 346.47790 * 14 13 12 41 41 H 1.09001 * 109.47016 * 226.48091 * 14 13 12 42 42 H 1.09002 * 109.48853 * 67.30009 * 16 15 14 43 43 H 1.08993 * 109.49239 * 307.21860 * 16 15 14 44 44 H 1.08994 * 109.62834 * 186.46128 * 17 16 15 45 45 H 1.09005 * 109.78600 * 65.97800 * 17 16 15 46 46 H 0.97000 * 120.00022 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.62312 * 68.25364 * 27 18 17 48 48 H 1.08995 * 109.63201 * 188.82920 * 27 18 17 49 49 H 1.09003 * 109.49219 * 292.71011 * 28 15 14 50 50 H 1.09006 * 109.49106 * 52.75745 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6089 0.6355 -0.0006 5 6 4.7388 1.4652 -0.0013 6 6 6.0080 0.9120 -0.1072 7 6 7.1192 1.7319 -0.1081 8 6 6.9689 3.1028 -0.0043 9 6 5.7064 3.6567 0.1002 10 6 5.5469 5.1509 0.2126 11 6 4.5908 2.8419 0.0967 12 6 3.6144 -0.7167 0.0041 13 6 2.3270 -1.1337 -0.0006 14 6 1.8591 -2.5662 -0.0001 15 7 1.3280 -2.9073 1.3263 16 6 0.9253 -4.3189 1.3850 17 6 0.2137 -4.5887 2.7151 18 7 1.0884 -4.1453 3.8113 19 6 1.3783 -4.9773 4.8595 20 1 1.4398 -6.0439 4.7014 21 6 1.5987 -4.4495 6.1242 22 7 1.2351 -3.2136 6.3940 23 14 2.4115 -5.4930 7.4433 24 1 3.7630 -5.9047 6.9859 25 1 2.5313 -4.7033 8.6952 26 1 1.5857 -6.7007 7.6977 27 6 1.6387 -2.7825 3.7548 28 6 2.2988 -2.5859 2.3808 29 1 -0.3633 0.0717 1.0252 30 1 -0.3633 0.8520 -0.5747 31 1 -0.3633 -0.9237 -0.4504 32 1 6.1260 -0.1585 -0.1887 33 1 8.1066 1.3022 -0.1909 34 1 7.8394 3.7420 -0.0048 35 1 5.4551 5.5825 -0.7841 36 1 4.6514 5.3783 0.7909 37 1 6.4189 5.5729 0.7123 38 1 3.6047 3.2754 0.1745 39 1 4.4892 -1.3502 0.0084 40 1 2.6972 -3.2222 -0.2357 41 1 1.0768 -2.6932 -0.7485 42 1 1.8090 -4.9526 1.3102 43 1 0.2486 -4.5387 0.5594 44 1 0.0148 -5.6557 2.8141 45 1 -0.7254 -4.0364 2.7499 46 1 1.3894 -2.8446 7.2777 47 1 0.8352 -2.0576 3.8855 48 1 2.3822 -2.6549 4.5414 49 1 3.1634 -3.2437 2.2921 50 1 2.6186 -1.5490 2.2770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593572464.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = 135.370364 kcal Electronic energy + Delta-G solvation = -29390.402391 eV Core-core repulsion = 25612.911903 eV Total energy + Delta-G solvation = -3777.490488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66228 -39.44378 -37.90744 -34.88599 -34.06864 -32.64333 -31.68973 -30.93501 -29.95994 -29.82620 -27.98203 -26.94188 -26.83465 -24.55324 -22.75803 -22.58437 -22.42183 -21.52081 -20.36309 -19.31773 -18.94032 -17.69574 -16.69589 -16.31439 -15.65381 -15.40820 -14.92290 -14.81221 -14.44269 -14.36005 -14.06921 -13.97001 -13.87262 -13.40738 -13.38787 -13.16784 -13.03109 -12.93527 -12.74094 -12.55737 -12.19503 -12.11219 -11.98714 -11.78563 -11.57725 -11.36757 -11.33365 -11.03080 -10.71199 -10.48679 -10.43965 -10.26283 -10.03990 -9.97168 -9.73500 -9.53696 -9.09143 -8.93392 -8.46056 -7.98891 -7.69225 -6.54458 -5.74367 -3.20313 0.68869 1.04348 2.10602 2.33297 2.74172 3.39721 3.45358 3.46346 3.51614 4.24842 4.50766 4.51795 4.58694 4.66212 4.74393 4.86587 4.95381 5.03016 5.13804 5.27388 5.30582 5.36183 5.43100 5.44154 5.51951 5.54211 5.62794 5.72888 5.78686 5.86022 5.91821 5.94549 5.99244 6.06448 6.10934 6.14218 6.22469 6.25053 6.26974 6.34989 6.40510 6.52507 6.62139 6.73247 6.77612 7.00744 7.13785 7.27736 7.66243 7.68925 7.72843 7.78638 7.87135 8.50879 9.25873 9.88457 10.50568 11.33961 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.002788 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.393650 B =10042.250011 C =11292.121556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.112 3.888 3 N -0.297 5.297 4 N -0.328 5.328 5 C 0.177 3.823 6 C -0.152 4.152 7 C -0.087 4.087 8 C -0.138 4.138 9 C -0.062 4.062 10 C -0.115 4.115 11 C -0.125 4.125 12 C 0.054 3.946 13 C -0.203 4.203 14 C 0.130 3.870 15 N -0.525 5.525 16 C 0.045 3.955 17 C 0.149 3.851 18 N -0.594 5.594 19 C -0.256 4.256 20 H 0.062 0.938 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.184 3.816 28 C 0.040 3.960 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.137 0.863 39 H 0.172 0.828 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.025 0.975 46 H 0.254 0.746 47 H 0.026 0.974 48 H 0.076 0.924 49 H 0.020 0.980 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 11.710 -17.444 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.056 4.056 3 N -0.117 5.117 4 N -0.102 5.102 5 C 0.084 3.916 6 C -0.173 4.173 7 C -0.106 4.106 8 C -0.157 4.157 9 C -0.063 4.063 10 C -0.171 4.171 11 C -0.145 4.145 12 C -0.088 4.088 13 C -0.214 4.214 14 C 0.001 3.999 15 N -0.250 5.250 16 C -0.084 4.084 17 C 0.023 3.977 18 N -0.317 5.317 19 C -0.386 4.386 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.058 3.942 28 C -0.089 4.089 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.155 0.845 39 H 0.189 0.811 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.094 0.906 49 H 0.038 0.962 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.023 13.359 -17.178 23.193 hybrid contribution 1.337 -1.964 0.697 2.476 sum 9.360 11.395 -16.482 22.116 Atomic orbital electron populations 1.20177 0.85900 1.02823 1.03723 1.22410 0.97271 0.89709 0.96208 1.77373 0.85249 1.22654 1.26413 1.45577 1.04304 1.03932 1.56418 1.17531 0.83694 0.89980 1.00352 1.20807 0.90420 1.00648 1.05395 1.20924 0.98032 0.93329 0.98318 1.21065 0.96856 0.95083 1.02660 1.19805 0.92465 0.96214 0.97828 1.20810 1.03051 0.90779 1.02508 1.20766 0.99887 0.90881 1.02917 1.22338 0.99467 0.84282 1.02705 1.19964 0.91210 0.96665 1.13516 1.20352 0.97656 0.89199 0.92696 1.62029 1.40902 1.20358 1.01752 1.22615 0.98689 0.87320 0.99805 1.20971 0.92598 0.97528 0.86636 1.44068 1.53021 1.12728 1.21911 1.19078 1.42936 0.90016 0.86554 0.92044 1.25151 1.00509 0.96756 0.96909 1.70021 1.48287 1.15003 1.21046 0.86406 0.79690 0.79664 0.81184 1.21090 1.21632 1.20825 1.20822 0.96460 0.85964 0.90936 1.22903 0.93061 0.98575 0.94372 0.89644 0.91521 0.90007 0.85359 0.85096 0.85622 0.90882 0.91175 0.91211 0.84528 0.81084 0.95117 0.90419 0.95574 0.92009 0.92750 0.95696 0.93608 0.95556 0.90602 0.96184 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.29 36.01 0.37 -0.48 16 2 C 0.11 1.68 7.22 -82.37 -0.59 1.09 16 3 N -0.30 -4.72 11.88 33.69 0.40 -4.32 16 4 N -0.33 -4.82 3.80 -10.70 -0.04 -4.86 16 5 C 0.18 2.31 6.68 -83.60 -0.56 1.75 16 6 C -0.15 -1.62 9.46 -39.40 -0.37 -1.99 16 7 C -0.09 -0.77 10.04 -39.61 -0.40 -1.17 16 8 C -0.14 -1.19 9.70 -39.55 -0.38 -1.58 16 9 C -0.06 -0.61 5.88 -104.65 -0.62 -1.22 16 10 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 11 C -0.12 -1.51 9.32 -39.40 -0.37 -1.87 16 12 C 0.05 0.75 10.18 -17.10 -0.17 0.57 16 13 C -0.20 -2.97 3.93 -105.03 -0.41 -3.38 16 14 C 0.13 1.86 5.21 -4.98 -0.03 1.83 16 15 N -0.53 -9.26 4.72 -235.47 -1.11 -10.38 16 16 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 17 C 0.15 3.20 6.69 -3.60 -0.02 3.17 16 18 N -0.59 -15.29 3.00 -171.74 -0.52 -15.81 16 19 C -0.26 -7.15 9.58 -15.06 -0.14 -7.30 16 20 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 21 C 0.01 0.17 4.93 -17.43 -0.09 0.09 16 22 N -0.90 -26.73 11.45 55.49 0.64 -26.09 16 23 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.18 4.58 5.41 -3.37 -0.02 4.56 16 28 C 0.04 0.81 5.37 -3.47 -0.02 0.79 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.93 7.59 -51.93 -0.39 0.54 16 32 H 0.13 1.17 6.77 -52.49 -0.36 0.82 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.14 1.72 7.71 -52.49 -0.40 1.31 16 39 H 0.17 1.91 7.07 -52.48 -0.37 1.54 16 40 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.08 0.99 7.82 -51.93 -0.41 0.58 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 44 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 2.09 6.47 -51.93 -0.34 1.76 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 1.17 6.25 -51.93 -0.32 0.85 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -32.53 400.58 -11.15 -43.68 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.04 Total: -0.38 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.48 Total: -4.81 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.63 Total: -61.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.53 -11.15 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593572464.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.046 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds