Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30879 * 125.87484 * 2 1 4 4 N 1.40096 * 108.21273 * 180.02562 * 3 2 1 5 5 C 1.40177 * 126.04955 * 180.02562 * 4 3 2 6 6 C 1.38840 * 120.06725 * 179.70168 * 5 4 3 7 7 C 1.38118 * 119.93719 * 179.79522 * 6 5 4 8 8 C 1.38277 * 120.06447 * 0.48070 * 7 6 5 9 9 C 1.50699 * 119.93622 * 179.77221 * 8 7 6 10 10 C 1.38282 * 120.13467 * 359.75106 * 8 7 6 11 11 C 1.38116 * 120.06472 * 0.02562 * 10 8 7 12 12 C 1.35225 * 107.89114 * 359.77420 * 4 3 2 13 13 C 1.35321 * 107.71551 * 0.36245 * 12 4 3 14 14 C 1.50697 * 126.03039 * 179.89561 * 13 12 4 15 15 N 1.46908 * 109.46642 * 105.24725 * 14 13 12 16 16 C 1.46898 * 110.99718 * 184.32156 * 15 14 13 17 17 C 1.53239 * 109.33940 * 187.24898 * 16 15 14 18 18 N 1.47072 * 108.52456 * 306.17490 * 17 16 15 19 19 C 1.36943 * 120.88077 * 231.18506 * 18 17 16 20 20 H 1.08008 * 119.99673 * 28.69507 * 19 18 17 21 21 C 1.38807 * 120.00285 * 208.41543 * 19 18 17 22 22 N 1.31623 * 119.99753 * 16.88768 * 21 19 18 23 23 Si 1.86794 * 120.00394 * 196.88714 * 21 19 18 24 24 H 1.48503 * 109.47301 * 94.96385 * 23 21 19 25 25 H 1.48499 * 109.47403 * 214.96513 * 23 21 19 26 26 H 1.48498 * 109.47204 * 334.96553 * 23 21 19 27 27 C 1.47072 * 118.23929 * 51.45208 * 18 17 16 28 28 C 1.46892 * 111.00046 * 308.62125 * 15 14 13 29 29 H 1.08996 * 109.47631 * 273.77177 * 1 2 3 30 30 H 1.09007 * 109.46776 * 33.77216 * 1 2 3 31 31 H 1.09001 * 109.47025 * 153.76980 * 1 2 3 32 32 H 1.08003 * 120.02857 * 359.97438 * 6 5 4 33 33 H 1.07996 * 119.96809 * 180.21067 * 7 6 5 34 34 H 1.09006 * 109.46978 * 269.98111 * 9 8 7 35 35 H 1.09002 * 109.47188 * 29.97853 * 9 8 7 36 36 H 1.08999 * 109.47660 * 149.98273 * 9 8 7 37 37 H 1.08000 * 119.97130 * 179.97438 * 10 8 7 38 38 H 1.08001 * 120.03716 * 179.97438 * 11 10 8 39 39 H 1.08003 * 126.13970 * 180.22048 * 12 4 3 40 40 H 1.08998 * 109.47847 * 345.24531 * 14 13 12 41 41 H 1.08999 * 109.47192 * 225.24235 * 14 13 12 42 42 H 1.09008 * 109.49342 * 67.29358 * 16 15 14 43 43 H 1.09000 * 109.51604 * 307.22474 * 16 15 14 44 44 H 1.09004 * 109.63268 * 186.45615 * 17 16 15 45 45 H 1.09004 * 109.78508 * 65.97934 * 17 16 15 46 46 H 0.96993 * 120.00216 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.63045 * 68.25864 * 27 18 17 48 48 H 1.09005 * 109.63373 * 188.83863 * 27 18 17 49 49 H 1.09002 * 109.49580 * 292.71010 * 28 15 14 50 50 H 1.09000 * 109.49310 * 52.75993 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6089 0.6355 -0.0006 5 6 4.7388 1.4651 -0.0003 6 6 6.0106 0.9083 0.0053 7 6 7.1221 1.7282 0.0013 8 6 6.9691 3.1025 0.0018 9 6 8.1838 3.9944 0.0027 10 6 5.7037 3.6601 0.0011 11 6 4.5885 2.8453 0.0004 12 6 3.6143 -0.7168 0.0041 13 6 2.3269 -1.1337 -0.0006 14 6 1.8591 -2.5662 -0.0001 15 7 1.3553 -2.9162 1.3348 16 6 0.9849 -4.3362 1.4020 17 6 0.2993 -4.6189 2.7430 18 7 1.1800 -4.1540 3.8252 19 6 1.5038 -4.9772 4.8706 20 1 1.5327 -6.0472 4.7263 21 6 1.8004 -4.4362 6.1140 22 7 1.4581 -3.1958 6.3906 23 14 2.6852 -5.4686 7.3948 24 1 4.1443 -5.2016 7.3241 25 1 2.1827 -5.1171 8.7473 26 1 2.4321 -6.9080 7.1314 27 6 1.6989 -2.7795 3.7581 28 6 2.3342 -2.5711 2.3742 29 1 -0.3634 0.0676 1.0254 30 1 -0.3633 0.8543 -0.5713 31 1 -0.3633 -0.9219 -0.4542 32 1 6.1307 -0.1651 0.0098 33 1 8.1116 1.2956 0.0022 34 1 8.4760 4.2093 1.0306 35 1 9.0037 3.4921 -0.5107 36 1 7.9503 4.9269 -0.5111 37 1 5.5872 4.7338 0.0019 38 1 3.6004 3.2813 0.0003 39 1 4.4890 -1.3502 0.0083 40 1 2.6920 -3.2207 -0.2571 41 1 1.0616 -2.6883 -0.7329 42 1 1.8813 -4.9504 1.3152 43 1 0.3012 -4.5732 0.5868 44 1 0.1255 -5.6900 2.8468 45 1 -0.6513 -4.0876 2.7906 46 1 1.6650 -2.8178 7.2595 47 1 0.8817 -2.0722 3.8995 48 1 2.4512 -2.6338 4.5334 49 1 3.2118 -3.2099 2.2738 50 1 2.6294 -1.5277 2.2637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594601357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = 136.469955 kcal Electronic energy + Delta-G solvation = -29342.017473 eV Core-core repulsion = 25564.574667 eV Total energy + Delta-G solvation = -3777.442806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66022 -39.45173 -37.91517 -34.97859 -34.13722 -31.88081 -31.79638 -31.27990 -30.11586 -29.81157 -28.59955 -27.22198 -25.77465 -24.43197 -23.13879 -22.49677 -22.26873 -21.64124 -20.50303 -19.31748 -18.96559 -17.98146 -16.68838 -15.68529 -15.64611 -15.41586 -14.92315 -14.91646 -14.47683 -14.35919 -14.00804 -13.98942 -13.90129 -13.69505 -13.38363 -13.17105 -13.05918 -12.94794 -12.72666 -12.58648 -12.17601 -12.08292 -11.99151 -11.83069 -11.56880 -11.36974 -11.28387 -11.03644 -10.73546 -10.47601 -10.40862 -10.25529 -10.02230 -9.87383 -9.71755 -9.53712 -9.29279 -8.91472 -8.46723 -7.92789 -7.68014 -6.59688 -5.74298 -3.16910 0.67038 1.06707 2.09378 2.34476 2.74198 3.39019 3.45965 3.47580 3.51915 4.27981 4.51488 4.55074 4.57264 4.59997 4.68169 4.79457 4.98163 5.05304 5.16340 5.28346 5.28782 5.35076 5.42847 5.45457 5.51585 5.54223 5.64940 5.69611 5.77667 5.84964 5.91123 5.94454 5.98868 5.99357 6.10147 6.14254 6.21931 6.24800 6.29088 6.35339 6.40659 6.52299 6.61214 6.73274 6.77609 6.99409 7.13994 7.29963 7.66638 7.70312 7.72903 7.78405 7.87633 8.48580 9.25388 9.88896 10.48713 11.34220 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.002832 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.572001 B = 9885.118375 C =11475.598806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.111 3.889 3 N -0.297 5.297 4 N -0.327 5.327 5 C 0.167 3.833 6 C -0.141 4.141 7 C -0.092 4.092 8 C -0.104 4.104 9 C -0.112 4.112 10 C -0.096 4.096 11 C -0.119 4.119 12 C 0.054 3.946 13 C -0.204 4.204 14 C 0.130 3.870 15 N -0.526 5.526 16 C 0.045 3.955 17 C 0.149 3.851 18 N -0.595 5.595 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.182 3.818 28 C 0.040 3.960 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.172 0.828 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.025 0.975 46 H 0.253 0.747 47 H 0.025 0.975 48 H 0.081 0.919 49 H 0.020 0.980 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 11.247 -17.564 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 N -0.117 5.117 4 N -0.101 5.101 5 C 0.075 3.925 6 C -0.162 4.162 7 C -0.111 4.111 8 C -0.105 4.105 9 C -0.169 4.169 10 C -0.114 4.114 11 C -0.139 4.139 12 C -0.088 4.088 13 C -0.214 4.214 14 C 0.001 3.999 15 N -0.251 5.251 16 C -0.084 4.084 17 C 0.023 3.977 18 N -0.319 5.319 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.056 3.944 28 C -0.089 4.089 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.189 0.811 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.043 0.957 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.100 0.900 49 H 0.038 0.962 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.343 12.873 -17.304 23.125 hybrid contribution 1.323 -1.893 0.681 2.408 sum 9.666 10.980 -16.623 22.143 Atomic orbital electron populations 1.20177 0.85925 1.02820 1.03720 1.22403 0.97258 0.89719 0.96302 1.77368 0.85257 1.22651 1.26435 1.45574 1.04303 1.03925 1.56317 1.17547 0.83655 0.90035 1.01307 1.20811 0.90307 1.00611 1.04444 1.20821 0.98106 0.92685 0.99459 1.19961 0.95247 0.94195 1.01096 1.20769 0.95027 0.98618 1.02461 1.20928 0.91213 0.99830 0.99448 1.20886 1.00294 0.90983 1.01741 1.22332 0.99464 0.84300 1.02725 1.19953 0.91226 0.96652 1.13576 1.20357 0.97814 0.89175 0.92559 1.62047 1.41918 1.19180 1.01913 1.22611 0.98786 0.87266 0.99772 1.20964 0.92653 0.97393 0.86731 1.44130 1.53132 1.11785 1.22813 1.19186 1.41240 0.89838 0.87873 0.91768 1.25063 1.01111 0.96763 0.96742 1.70039 1.48153 1.14529 1.21873 0.86292 0.79666 0.79809 0.81133 1.21603 1.21766 1.20403 1.20881 0.97101 0.85496 0.90930 1.22910 0.92875 0.98550 0.94580 0.89655 0.91499 0.90029 0.85276 0.85155 0.91062 0.91506 0.91506 0.85258 0.84476 0.81108 0.95115 0.90427 0.95564 0.92001 0.92748 0.95680 0.93691 0.95657 0.90039 0.96214 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.29 36.01 0.37 -0.48 16 2 C 0.11 1.67 7.22 -82.37 -0.59 1.07 16 3 N -0.30 -4.72 11.87 33.69 0.40 -4.32 16 4 N -0.33 -4.80 3.80 -10.70 -0.04 -4.84 16 5 C 0.17 2.17 6.69 -83.59 -0.56 1.61 16 6 C -0.14 -1.52 9.46 -39.40 -0.37 -1.89 16 7 C -0.09 -0.84 9.69 -39.61 -0.38 -1.22 16 8 C -0.10 -0.92 5.88 -104.59 -0.62 -1.53 16 9 C -0.11 -0.68 10.01 36.00 0.36 -0.31 16 10 C -0.10 -0.91 9.69 -39.61 -0.38 -1.29 16 11 C -0.12 -1.42 9.66 -39.40 -0.38 -1.80 16 12 C 0.05 0.75 10.12 -17.10 -0.17 0.58 16 13 C -0.20 -2.98 3.90 -105.04 -0.41 -3.39 16 14 C 0.13 1.86 5.25 -4.97 -0.03 1.83 16 15 N -0.53 -9.28 4.73 -235.46 -1.11 -10.40 16 16 C 0.05 0.80 5.61 -3.70 -0.02 0.78 16 17 C 0.15 3.19 6.69 -3.61 -0.02 3.16 16 18 N -0.60 -15.32 3.02 -171.74 -0.52 -15.84 16 19 C -0.25 -7.02 9.61 -15.06 -0.14 -7.17 16 20 H 0.06 1.76 7.88 -52.48 -0.41 1.34 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -26.76 11.26 55.49 0.63 -26.13 16 23 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 C 0.18 4.54 5.43 -3.37 -0.02 4.52 16 28 C 0.04 0.81 5.33 -3.47 -0.02 0.79 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.92 7.56 -51.93 -0.39 0.53 16 32 H 0.13 1.20 6.74 -52.48 -0.35 0.85 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.14 1.67 7.70 -52.49 -0.40 1.27 16 39 H 0.17 1.92 7.04 -52.48 -0.37 1.55 16 40 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 42 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 44 H 0.05 1.12 7.95 -51.93 -0.41 0.70 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 2.26 6.24 -51.93 -0.32 1.94 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 1.18 6.17 -51.93 -0.32 0.86 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -32.52 399.95 -11.15 -43.67 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.02 Total: -0.36 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.48 Total: -4.77 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.65 Total: -61.54 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.52 -11.15 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594601357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.138 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds