Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47162 * 2 1 4 4 C 1.46498 * 120.00101 * 270.00064 * 3 2 1 5 5 C 1.50707 * 109.46843 * 269.99919 * 4 3 2 6 6 H 1.07998 * 119.99742 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99490 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00445 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99376 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47232 * 90.00223 * 9 7 5 11 11 H 1.48506 * 109.46995 * 209.99935 * 9 7 5 12 12 H 1.48502 * 109.47139 * 329.99615 * 9 7 5 13 13 C 1.34784 * 120.00110 * 89.99378 * 3 2 1 14 14 O 1.21283 * 119.99744 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99745 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47016 * 173.79646 * 15 13 3 17 17 C 1.46835 * 111.00130 * 169.43758 * 16 15 13 18 18 C 1.53009 * 109.55271 * 185.74760 * 17 16 15 19 19 C 1.53244 * 109.23906 * 300.66520 * 18 17 16 20 20 C 1.52703 * 109.33585 * 177.39859 * 19 18 17 21 21 C 1.53080 * 109.89266 * 49.38783 * 20 19 18 22 22 S 1.81743 * 108.84821 * 63.19022 * 21 20 19 23 23 C 1.81749 * 102.21669 * 306.81991 * 22 21 20 24 24 C 1.52722 * 109.33904 * 298.44287 * 19 18 17 25 25 C 1.53238 * 108.94414 * 57.90480 * 19 18 17 26 26 C 1.46841 * 110.99761 * 293.62177 * 16 15 13 27 27 H 1.09005 * 109.47459 * 300.00301 * 1 2 3 28 28 H 1.08998 * 109.46901 * 60.00314 * 1 2 3 29 29 H 1.09006 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47183 * 239.99769 * 2 1 3 31 31 H 1.08998 * 109.46901 * 119.99686 * 2 1 3 32 32 H 1.09005 * 109.47143 * 29.99641 * 4 3 2 33 33 H 1.08993 * 109.47278 * 149.99703 * 4 3 2 34 34 H 0.97001 * 119.99792 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47048 * 293.79398 * 15 13 3 36 36 H 1.08994 * 109.47223 * 53.79834 * 15 13 3 37 37 H 1.08995 * 109.45801 * 305.77943 * 17 16 15 38 38 H 1.09008 * 109.45300 * 65.71991 * 17 16 15 39 39 H 1.09002 * 109.50934 * 180.73986 * 18 17 16 40 40 H 1.09003 * 109.55371 * 60.62159 * 18 17 16 41 41 H 1.08998 * 109.40191 * 169.51984 * 20 19 18 42 42 H 1.09003 * 109.40190 * 289.25955 * 20 19 18 43 43 H 1.09000 * 109.57483 * 303.38143 * 21 20 19 44 44 H 1.09002 * 109.57878 * 182.99786 * 21 20 19 45 45 H 1.09000 * 109.57202 * 293.36978 * 23 22 21 46 46 H 1.08998 * 109.57209 * 172.99035 * 23 22 21 47 47 H 1.09001 * 109.40621 * 70.73802 * 24 19 18 48 48 H 1.09008 * 109.39961 * 190.48067 * 24 19 18 49 49 H 1.09005 * 109.50760 * 182.15992 * 25 19 18 50 50 H 1.09004 * 109.54734 * 62.04122 * 25 19 18 51 51 H 1.08993 * 109.45844 * 294.27646 * 26 16 15 52 52 H 1.09008 * 109.45667 * 54.24103 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0956 7 6 4.1491 2.3896 -2.8779 8 7 3.3488 3.1249 -3.6185 9 14 5.9136 2.0966 -3.4167 10 1 5.9777 0.8753 -4.2589 11 1 6.3922 3.2639 -4.2002 12 1 6.7736 1.9180 -2.2193 13 6 2.2429 2.0167 1.1673 14 8 2.6476 3.1600 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.4489 2.1497 3.5849 17 6 1.9988 1.6098 4.8740 18 6 2.3674 2.5846 5.9943 19 6 3.8865 2.7855 6.0093 20 6 4.2508 3.8074 7.0840 21 6 3.5684 3.4405 8.4042 22 16 4.2023 1.8324 8.9658 23 6 3.9292 0.7812 7.5084 24 6 4.5707 1.4492 6.2895 25 6 4.3329 3.3072 4.6393 26 6 3.9081 2.3116 3.5578 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6750 3.5153 -4.4444 35 1 0.9254 1.1093 2.5797 36 1 2.5385 0.3630 2.4834 37 1 0.9177 1.4729 4.8528 38 1 2.4826 0.6497 5.0542 39 1 2.0447 2.1770 6.9523 40 1 1.8753 3.5417 5.8216 41 1 5.3316 3.8150 7.2249 42 1 3.9211 4.7974 6.7689 43 1 2.4909 3.3756 8.2527 44 1 3.7886 4.2014 9.1530 45 1 2.8590 0.6629 7.3389 46 1 4.3852 -0.1952 7.6719 47 1 4.4635 0.7984 5.4217 48 1 5.6297 1.6186 6.4849 49 1 5.4173 3.4171 4.6273 50 1 3.8669 4.2738 4.4476 51 1 4.3837 1.3486 3.7437 52 1 4.2140 2.6850 2.5804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602943975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -36.575577 kcal Electronic energy + Delta-G solvation = -29197.081952 eV Core-core repulsion = 25515.286528 eV Total energy + Delta-G solvation = -3681.795424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53086 -38.95088 -36.10499 -35.09647 -32.82143 -31.91077 -31.46181 -30.62340 -30.06208 -27.99024 -26.40892 -24.87409 -23.53855 -23.06572 -23.01359 -22.32030 -21.11678 -18.46721 -18.27714 -17.08027 -16.55329 -16.33948 -16.11030 -15.41490 -15.29495 -15.06343 -14.79488 -14.41032 -14.29389 -14.06278 -13.76204 -13.66098 -13.49480 -13.32732 -13.07284 -12.71735 -12.60210 -12.42019 -12.10360 -11.98976 -11.82501 -11.79118 -11.73090 -11.42386 -11.32136 -11.19511 -11.15249 -10.90636 -10.73957 -10.55168 -10.38707 -10.36994 -10.23966 -10.09712 -9.89025 -9.62356 -8.84755 -8.43900 -8.09563 -7.91391 -7.62715 -6.04458 -4.09217 1.53029 2.27393 3.28744 3.35529 3.38469 3.47902 3.65267 4.19419 4.26970 4.41661 4.43472 4.45616 4.69092 4.78879 4.88846 4.98813 5.05502 5.07747 5.15265 5.23090 5.23821 5.28234 5.30098 5.37806 5.42975 5.44099 5.50871 5.53430 5.63481 5.64517 5.66079 5.71873 5.76435 5.80462 5.87988 5.92252 5.97372 6.02459 6.16775 6.22258 6.31546 6.34373 6.47192 6.97882 7.16589 7.22479 7.46918 7.57768 7.92513 8.24087 8.46471 8.91161 9.16103 9.56092 11.03520 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.002727 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.958874 B =10264.046856 C =11142.061589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.516 5.516 17 C 0.056 3.944 18 C -0.112 4.112 19 C -0.065 4.065 20 C -0.110 4.110 21 C -0.081 4.081 22 S -0.277 6.277 23 C -0.081 4.081 24 C -0.116 4.116 25 C -0.099 4.099 26 C 0.051 3.949 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.028 0.972 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 -5.801 22.071 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.398 6.398 15 C -0.094 4.094 16 N -0.240 5.240 17 C -0.072 4.072 18 C -0.149 4.149 19 C -0.065 4.065 20 C -0.149 4.149 21 C -0.229 4.229 22 S -0.052 6.052 23 C -0.229 4.229 24 C -0.155 4.155 25 C -0.137 4.137 26 C -0.076 4.076 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.106 0.894 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.046 0.954 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.439 -4.883 22.823 23.466 hybrid contribution 0.711 -0.814 -1.499 1.848 sum -1.729 -5.698 21.324 22.140 Atomic orbital electron populations 1.22221 0.96832 1.01313 1.02351 1.21398 0.93495 0.84412 1.02473 1.48277 1.64190 1.13135 1.07741 1.19237 0.96122 0.93655 0.78127 1.21424 0.96957 1.31808 1.06172 0.92622 1.24929 0.97769 0.94950 0.96433 1.69931 1.35652 1.33472 1.14301 0.86525 0.84791 0.77675 0.78586 1.20685 1.21077 1.19936 1.20123 0.78945 0.87125 0.84675 1.90655 1.44689 1.17660 1.86807 1.22063 1.01638 0.94604 0.91048 1.61536 1.12873 1.48713 1.00926 1.22098 1.00092 0.95756 0.89270 1.21845 0.94970 1.00736 0.97370 1.20651 0.95537 0.94571 0.95758 1.21782 1.01122 0.99324 0.92674 1.23527 1.03043 0.95735 1.00590 1.86840 1.84244 1.09333 1.24765 1.23545 1.04512 1.00083 0.94733 1.21907 1.00207 0.96424 0.96939 1.21586 1.00413 0.99795 0.91868 1.22254 0.86513 0.97465 1.01352 0.93106 0.92004 0.92268 0.90042 0.92024 0.95152 0.93904 0.92736 0.88681 0.92879 0.90948 0.94992 0.91450 0.90583 0.90674 0.90478 0.89374 0.88102 0.89357 0.88206 0.90433 0.90680 0.91533 0.90472 0.95447 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.67 5.96 -4.04 -0.02 1.64 16 3 N -0.60 -12.43 2.46 -175.06 -0.43 -12.86 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.52 -14.74 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.51 10.28 7.21 -10.98 -0.08 10.20 16 14 O -0.52 -12.90 14.28 5.56 0.08 -12.82 16 15 C 0.04 0.55 4.18 -4.97 -0.02 0.53 16 16 N -0.52 -7.29 4.35 -236.16 -1.03 -8.32 16 17 C 0.06 0.59 5.07 -3.85 -0.02 0.57 16 18 C -0.11 -1.04 3.58 -26.60 -0.10 -1.14 16 19 C -0.06 -0.61 0.51 -154.55 -0.08 -0.69 16 20 C -0.11 -0.92 4.71 -26.84 -0.13 -1.05 16 21 C -0.08 -0.63 6.00 37.20 0.22 -0.41 16 22 S -0.28 -2.58 22.33 -107.50 -2.40 -4.98 16 23 C -0.08 -0.66 5.91 37.20 0.22 -0.44 16 24 C -0.12 -1.03 4.03 -26.83 -0.11 -1.14 16 25 C -0.10 -1.18 4.84 -26.60 -0.13 -1.31 16 26 C 0.05 0.74 4.87 -3.85 -0.02 0.72 16 27 H 0.05 0.63 7.41 -51.93 -0.39 0.24 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.80 6.27 -51.93 -0.33 0.47 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 1.22 7.25 -51.93 -0.38 0.84 16 36 H 0.05 0.71 7.04 -51.93 -0.37 0.35 16 37 H 0.07 0.71 8.01 -51.93 -0.42 0.29 16 38 H 0.03 0.31 6.41 -51.92 -0.33 -0.02 16 39 H 0.07 0.55 4.52 -51.93 -0.23 0.32 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 42 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.09 0.66 6.19 -51.93 -0.32 0.33 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.69 5.74 -51.93 -0.30 0.39 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.74 4.92 -51.93 -0.26 0.49 16 48 H 0.07 0.69 8.04 -51.92 -0.42 0.28 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 51 H 0.03 0.37 6.24 -51.93 -0.32 0.04 16 52 H 0.10 1.81 6.05 -51.92 -0.31 1.49 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -32.11 391.56 -11.42 -43.52 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.93 Total: -0.03 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.32 Total: -1.35 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.72 Total: -46.98 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -2.40 Total: -4.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.11 -11.42 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602943975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.948 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds