Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47162 * 2 1 4 4 C 1.46498 * 120.00101 * 270.00064 * 3 2 1 5 5 C 1.50707 * 109.46843 * 269.99919 * 4 3 2 6 6 H 1.07998 * 119.99742 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99490 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00445 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99376 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47232 * 90.00223 * 9 7 5 11 11 H 1.48506 * 109.46995 * 209.99935 * 9 7 5 12 12 H 1.48502 * 109.47139 * 329.99615 * 9 7 5 13 13 C 1.34784 * 120.00110 * 89.99378 * 3 2 1 14 14 O 1.21283 * 119.99744 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99745 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47016 * 173.79646 * 15 13 3 17 17 C 1.46835 * 111.00130 * 169.43758 * 16 15 13 18 18 C 1.53009 * 109.55271 * 185.74760 * 17 16 15 19 19 C 1.53244 * 109.23906 * 300.66520 * 18 17 16 20 20 C 1.52703 * 109.33585 * 177.39859 * 19 18 17 21 21 C 1.53080 * 109.89266 * 49.38783 * 20 19 18 22 22 S 1.81743 * 108.84821 * 63.19022 * 21 20 19 23 23 C 1.81749 * 102.21669 * 306.81991 * 22 21 20 24 24 C 1.52722 * 109.33904 * 298.44287 * 19 18 17 25 25 C 1.53238 * 108.94414 * 57.90480 * 19 18 17 26 26 C 1.46841 * 110.99761 * 293.62177 * 16 15 13 27 27 H 1.09005 * 109.47459 * 300.00301 * 1 2 3 28 28 H 1.08998 * 109.46901 * 60.00314 * 1 2 3 29 29 H 1.09006 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47183 * 239.99769 * 2 1 3 31 31 H 1.08998 * 109.46901 * 119.99686 * 2 1 3 32 32 H 1.09005 * 109.47143 * 29.99641 * 4 3 2 33 33 H 1.08993 * 109.47278 * 149.99703 * 4 3 2 34 34 H 0.97001 * 119.99792 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47048 * 293.79398 * 15 13 3 36 36 H 1.08994 * 109.47223 * 53.79834 * 15 13 3 37 37 H 1.08995 * 109.45801 * 305.77943 * 17 16 15 38 38 H 1.09008 * 109.45300 * 65.71991 * 17 16 15 39 39 H 1.09002 * 109.50934 * 180.73986 * 18 17 16 40 40 H 1.09003 * 109.55371 * 60.62159 * 18 17 16 41 41 H 1.08998 * 109.40191 * 169.51984 * 20 19 18 42 42 H 1.09003 * 109.40190 * 289.25955 * 20 19 18 43 43 H 1.09000 * 109.57483 * 303.38143 * 21 20 19 44 44 H 1.09002 * 109.57878 * 182.99786 * 21 20 19 45 45 H 1.09000 * 109.57202 * 293.36978 * 23 22 21 46 46 H 1.08998 * 109.57209 * 172.99035 * 23 22 21 47 47 H 1.09001 * 109.40621 * 70.73802 * 24 19 18 48 48 H 1.09008 * 109.39961 * 190.48067 * 24 19 18 49 49 H 1.09005 * 109.50760 * 182.15992 * 25 19 18 50 50 H 1.09004 * 109.54734 * 62.04122 * 25 19 18 51 51 H 1.08993 * 109.45844 * 294.27646 * 26 16 15 52 52 H 1.09008 * 109.45667 * 54.24103 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0956 7 6 4.1491 2.3896 -2.8779 8 7 3.3488 3.1249 -3.6185 9 14 5.9136 2.0966 -3.4167 10 1 5.9777 0.8753 -4.2589 11 1 6.3922 3.2639 -4.2002 12 1 6.7736 1.9180 -2.2193 13 6 2.2429 2.0167 1.1673 14 8 2.6476 3.1600 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.4489 2.1497 3.5849 17 6 1.9988 1.6098 4.8740 18 6 2.3674 2.5846 5.9943 19 6 3.8865 2.7855 6.0093 20 6 4.2508 3.8074 7.0840 21 6 3.5684 3.4405 8.4042 22 16 4.2023 1.8324 8.9658 23 6 3.9292 0.7812 7.5084 24 6 4.5707 1.4492 6.2895 25 6 4.3329 3.3072 4.6393 26 6 3.9081 2.3116 3.5578 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6750 3.5153 -4.4444 35 1 0.9254 1.1093 2.5797 36 1 2.5385 0.3630 2.4834 37 1 0.9177 1.4729 4.8528 38 1 2.4826 0.6497 5.0542 39 1 2.0447 2.1770 6.9523 40 1 1.8753 3.5417 5.8216 41 1 5.3316 3.8150 7.2249 42 1 3.9211 4.7974 6.7689 43 1 2.4909 3.3756 8.2527 44 1 3.7886 4.2014 9.1530 45 1 2.8590 0.6629 7.3389 46 1 4.3852 -0.1952 7.6719 47 1 4.4635 0.7984 5.4217 48 1 5.6297 1.6186 6.4849 49 1 5.4173 3.4171 4.6273 50 1 3.8669 4.2738 4.4476 51 1 4.3837 1.3486 3.7437 52 1 4.2140 2.6850 2.5804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602943975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -55.888049 kcal Electronic energy + Delta-G solvation = -29197.919404 eV Core-core repulsion = 25515.286528 eV Total energy + Delta-G solvation = -3682.632875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50820 -40.40108 -37.26976 -36.60786 -34.91070 -32.59642 -32.44063 -31.73527 -31.36244 -29.51576 -27.81665 -25.99200 -24.68810 -24.23171 -24.02351 -23.70253 -22.10127 -19.83170 -19.27791 -18.61562 -18.01495 -17.62900 -17.39092 -16.73405 -16.49931 -16.19371 -15.91172 -15.65844 -15.34293 -15.17515 -14.81524 -14.68629 -14.62668 -14.34885 -14.26071 -14.04771 -13.60816 -13.58753 -13.35175 -13.28641 -13.10022 -12.87500 -12.80551 -12.66557 -12.63974 -12.55554 -12.40922 -12.15983 -12.13176 -12.06941 -11.85178 -11.71765 -11.31538 -11.14253 -11.06573 -10.65020 -10.56864 -10.43248 -9.39021 -9.15469 -8.62275 -8.22709 -6.37736 0.88790 1.34431 1.37538 1.47605 1.63733 1.90641 2.25139 2.40552 3.00171 3.06511 3.50559 3.64118 3.68777 3.75220 4.02291 4.05343 4.07611 4.17741 4.22689 4.25372 4.32637 4.37009 4.41047 4.42442 4.49439 4.50104 4.57771 4.67261 4.68268 4.75504 4.83444 4.88099 4.93832 4.95902 4.99683 5.01556 5.04260 5.06089 5.09604 5.16719 5.23165 5.27643 5.35133 5.39719 5.45753 5.58494 5.87493 6.01494 6.07292 6.22680 6.70997 6.86834 7.29088 7.57964 8.84138 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.002727 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.958874 B =10264.046856 C =11142.061589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.495 3.505 14 O -0.579 6.579 15 C 0.053 3.947 16 N -0.536 5.536 17 C 0.056 3.944 18 C -0.107 4.107 19 C -0.057 4.057 20 C -0.107 4.107 21 C -0.071 4.071 22 S -0.308 6.308 23 C -0.071 4.071 24 C -0.111 4.111 25 C -0.094 4.094 26 C 0.058 3.942 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.019 0.981 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.041 0.959 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -8.275 24.308 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.458 6.458 15 C -0.078 4.078 16 N -0.261 5.261 17 C -0.071 4.071 18 C -0.144 4.144 19 C -0.057 4.057 20 C -0.146 4.146 21 C -0.219 4.219 22 S -0.083 6.083 23 C -0.219 4.219 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.070 4.070 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.037 0.963 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.116 0.884 46 H 0.127 0.873 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.639 -7.409 25.085 26.289 hybrid contribution 0.740 -0.007 -2.202 2.323 sum -1.899 -7.416 22.884 24.130 Atomic orbital electron populations 1.22148 0.94549 1.03451 1.01673 1.21726 0.95340 0.81447 1.03698 1.48311 1.64385 1.15045 1.06214 1.18639 0.95133 0.91394 0.80527 1.21689 0.97877 1.31848 1.06392 0.93025 1.25858 1.02343 0.94501 0.96480 1.70056 1.37779 1.34297 1.14781 0.85437 0.79074 0.78205 0.78220 1.18768 1.20684 1.19759 1.21228 0.77406 0.86744 0.86277 1.90627 1.47013 1.20410 1.87759 1.21972 1.03668 0.94336 0.87808 1.61470 1.12499 1.49762 1.02414 1.22217 1.01092 0.96475 0.87305 1.21826 0.94501 1.00192 0.97928 1.20560 0.95838 0.95153 0.94165 1.21729 1.01057 0.99041 0.92761 1.23517 1.03195 0.95041 1.00168 1.87002 1.84648 1.10692 1.25924 1.23531 1.05037 0.99979 0.93340 1.21837 1.00002 0.95883 0.97264 1.21515 1.00337 0.98329 0.93032 1.22072 0.87264 0.98337 0.99344 0.92012 0.94488 0.88616 0.91228 0.88342 0.96286 0.98832 0.92446 0.85759 0.90549 0.89411 0.93298 0.89445 0.91673 0.90996 0.90433 0.88587 0.87145 0.88373 0.87294 0.90690 0.91132 0.91408 0.92534 0.94119 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.10 16 2 C 0.10 2.99 5.96 86.38 0.51 3.50 16 3 N -0.61 -25.69 2.46 -826.16 -2.03 -27.72 16 4 C 0.26 14.49 5.16 85.64 0.44 14.93 16 5 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 9 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.50 20.54 7.21 87.66 0.63 21.17 16 14 O -0.58 -30.32 14.28 -3.04 -0.04 -30.36 16 15 C 0.05 1.45 4.18 85.55 0.36 1.81 16 16 N -0.54 -14.47 4.35 -901.07 -3.92 -18.39 16 17 C 0.06 1.00 5.07 86.32 0.44 1.44 16 18 C -0.11 -1.73 3.58 30.68 0.11 -1.62 16 19 C -0.06 -0.97 0.51 -52.21 -0.03 -1.00 16 20 C -0.11 -1.63 4.71 30.52 0.14 -1.48 16 21 C -0.07 -0.95 6.00 72.01 0.43 -0.52 16 22 S -0.31 -5.01 22.33 -56.49 -1.26 -6.27 16 23 C -0.07 -0.94 5.91 72.01 0.43 -0.52 16 24 C -0.11 -1.72 4.03 30.53 0.12 -1.60 16 25 C -0.09 -2.27 4.84 30.68 0.15 -2.12 16 26 C 0.06 1.67 4.87 86.32 0.42 2.09 16 27 H 0.06 1.35 7.41 -2.38 -0.02 1.33 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.10 2.21 6.27 -2.39 -0.01 2.20 16 32 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 33 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.12 2.71 7.25 -2.39 -0.02 2.70 16 36 H 0.08 1.77 7.04 -2.39 -0.02 1.76 16 37 H 0.09 1.34 8.01 -2.39 -0.02 1.32 16 38 H 0.05 0.74 6.41 -2.38 -0.02 0.72 16 39 H 0.09 1.11 4.52 -2.39 -0.01 1.09 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.15 8.04 -2.39 -0.02 1.14 16 42 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 43 H 0.10 1.15 6.19 -2.39 -0.01 1.13 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.13 5.74 -2.39 -0.01 1.11 16 46 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 1.22 4.92 -2.39 -0.01 1.21 16 48 H 0.07 1.18 8.04 -2.38 -0.02 1.16 16 49 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 51 H 0.04 1.04 6.24 -2.39 -0.01 1.03 16 52 H 0.05 1.80 6.05 -2.38 -0.01 1.79 16 Total: -1.00 -75.26 391.56 1.55 -73.70 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.90 Total: 15.74 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.60 Total: 2.68 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -5.66 Total: -102.80 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.04 Total: -30.36 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.26 Total: -6.27 kcal Total: -75.26 1.55 -73.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602943975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.817 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds