Wall clock time and date at job start Sat Apr 11 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47310 * 2 1 4 4 C 1.50701 * 109.47173 * 239.99743 * 2 1 3 5 5 O 1.21278 * 119.99732 * 270.73753 * 4 2 1 6 6 N 1.34775 * 119.99739 * 90.73702 * 4 2 1 7 7 C 1.46496 * 120.00419 * 354.78579 * 6 4 2 8 8 C 1.46506 * 119.99741 * 174.78085 * 6 4 2 9 9 C 1.50695 * 109.47279 * 90.00203 * 8 6 4 10 10 H 1.08007 * 119.99644 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00326 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99817 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00316 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47247 * 90.00049 * 13 11 9 15 15 H 1.48500 * 109.47384 * 210.00117 * 13 11 9 16 16 H 1.48500 * 109.46986 * 330.00430 * 13 11 9 17 17 N 1.46894 * 109.47084 * 119.99830 * 2 1 3 18 18 C 1.46846 * 111.00006 * 299.27180 * 17 2 1 19 19 C 1.53024 * 109.54316 * 174.24843 * 18 17 2 20 20 C 1.53239 * 109.23828 * 59.33276 * 19 18 17 21 21 C 1.52713 * 109.33656 * 182.57945 * 20 19 18 22 22 C 1.53085 * 109.88733 * 310.62590 * 21 20 19 23 23 S 1.81753 * 108.85193 * 296.80083 * 22 21 20 24 24 C 1.81753 * 102.20524 * 53.18148 * 23 22 21 25 25 C 1.52720 * 109.33720 * 61.54718 * 20 19 18 26 26 C 1.53219 * 108.94442 * 302.07864 * 20 19 18 27 27 C 1.46846 * 111.00102 * 175.07738 * 17 2 1 28 28 H 1.09007 * 109.46788 * 65.43844 * 1 2 3 29 29 H 1.08992 * 109.47088 * 185.44063 * 1 2 3 30 30 H 1.09000 * 109.47166 * 305.44421 * 1 2 3 31 31 H 1.08996 * 109.47424 * 94.64623 * 7 6 4 32 32 H 1.09007 * 109.47065 * 214.64920 * 7 6 4 33 33 H 1.09004 * 109.47080 * 334.64244 * 7 6 4 34 34 H 1.08995 * 109.47342 * 210.00208 * 8 6 4 35 35 H 1.09000 * 109.47011 * 329.99771 * 8 6 4 36 36 H 0.96999 * 119.99748 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.46107 * 54.22613 * 18 17 2 38 38 H 1.09001 * 109.46283 * 294.26985 * 18 17 2 39 39 H 1.09002 * 109.50966 * 179.26692 * 19 18 17 40 40 H 1.09002 * 109.50568 * 299.35560 * 19 18 17 41 41 H 1.09006 * 109.40479 * 70.75465 * 21 20 19 42 42 H 1.09001 * 109.40530 * 190.50144 * 21 20 19 43 43 H 1.09000 * 109.57764 * 176.98807 * 22 21 20 44 44 H 1.09003 * 109.57515 * 56.60962 * 22 21 20 45 45 H 1.09002 * 109.57079 * 187.00603 * 24 23 22 46 46 H 1.08997 * 109.57153 * 66.63810 * 24 23 22 47 47 H 1.09005 * 109.40310 * 169.51434 * 25 20 19 48 48 H 1.09003 * 109.39919 * 289.25092 * 25 20 19 49 49 H 1.08999 * 109.51259 * 177.86035 * 26 20 19 50 50 H 1.08996 * 109.51103 * 298.00257 * 26 20 19 51 51 H 1.09002 * 109.46228 * 65.74159 * 27 17 2 52 52 H 1.08995 * 109.46199 * 305.77445 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2218 -1.9081 -1.2042 6 7 2.2711 -0.0149 -2.3599 7 6 1.9352 1.4094 -2.4279 8 6 2.8668 -0.6832 -3.5196 9 6 1.7738 -1.2412 -4.3941 10 1 0.7388 -1.1114 -4.1138 11 6 2.0948 -1.9174 -5.5519 12 7 3.3551 -2.0759 -5.8929 13 14 0.7399 -2.6098 -6.6355 14 1 0.3377 -1.5901 -7.6374 15 1 1.2363 -3.8220 -7.3350 16 1 -0.4314 -2.9675 -5.7957 17 7 2.0197 -0.6924 1.1994 18 6 1.5631 -0.0165 2.4205 19 6 1.9686 -0.8411 3.6441 20 6 3.4931 -0.9954 3.6664 21 6 3.8954 -1.8717 4.8506 22 6 3.2118 -1.3704 6.1253 23 16 3.8017 0.3105 6.4859 24 6 3.4871 1.1729 4.9172 25 6 4.1394 0.3837 3.7792 26 6 3.9445 -1.6629 2.3632 27 6 3.4828 -0.8148 1.1760 28 1 -0.3633 0.4272 -0.9348 29 1 -0.3633 -1.0230 0.0974 30 1 -0.3633 0.5960 0.8372 31 1 2.8152 2.0026 -2.1794 32 1 1.6032 1.6566 -3.4363 33 1 1.1370 1.6287 -1.7187 34 1 3.4569 0.0347 -4.0892 35 1 3.5106 -1.4947 -3.1802 36 1 3.5810 -2.5519 -6.7073 37 1 0.4782 0.0858 2.3949 38 1 2.0195 0.9715 2.4810 39 1 1.6409 -0.3324 4.5508 40 1 1.5031 -1.8253 3.5904 41 1 3.5931 -2.9012 4.6585 42 1 4.9769 -1.8314 4.9800 43 1 3.4597 -2.0305 6.9565 44 1 2.1318 -1.3547 5.9786 45 1 3.9149 2.1746 4.9590 46 1 2.4127 1.2397 4.7463 47 1 5.2043 0.2690 3.9819 48 1 4.0067 0.9235 2.8416 49 1 5.0315 -1.7428 2.3526 50 1 3.5050 -2.6578 2.2925 51 1 3.9313 0.1766 1.2419 52 1 3.7925 -1.2922 0.2464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602949892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:26 Heat of formation + Delta-G solvation = -31.379450 kcal Electronic energy + Delta-G solvation = -29476.011561 eV Core-core repulsion = 25794.441459 eV Total energy + Delta-G solvation = -3681.570103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.68171 -39.06471 -36.24392 -34.74889 -32.81787 -32.20395 -31.88596 -30.87806 -29.17983 -27.79166 -25.94515 -25.45742 -24.40158 -23.55967 -22.89337 -21.84798 -21.01916 -18.50827 -18.33795 -17.14706 -16.56327 -16.48096 -16.26617 -15.36952 -15.19558 -14.91711 -14.80137 -14.53946 -14.31913 -14.05190 -13.88493 -13.61693 -13.50268 -13.14763 -12.96381 -12.75176 -12.56475 -12.22637 -12.09572 -12.04715 -11.99388 -11.80521 -11.65259 -11.49200 -11.43118 -11.27123 -11.22481 -11.15854 -10.88451 -10.58837 -10.39307 -10.36837 -10.22389 -10.15005 -9.90491 -9.61618 -8.78660 -8.43727 -8.14624 -7.92933 -7.63408 -6.04355 -4.08715 1.51584 2.25915 3.29787 3.35309 3.37352 3.41951 3.66446 4.13414 4.24920 4.39205 4.41205 4.45105 4.67219 4.76777 4.86970 4.91471 5.04030 5.05374 5.12060 5.17758 5.23863 5.26756 5.30882 5.34226 5.36618 5.39906 5.45957 5.57593 5.61523 5.62354 5.68603 5.70905 5.74656 5.83198 5.86763 5.88686 5.90915 5.96426 6.13882 6.16090 6.21325 6.27214 6.36059 6.95869 7.13692 7.18752 7.41691 7.54342 7.92230 8.23340 8.41872 8.91009 9.12097 9.56410 11.03777 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.002507 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.571941 B =11164.212557 C =11360.179618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 H 0.053 0.947 4 C 0.509 3.491 5 O -0.519 6.519 6 N -0.605 5.605 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.511 5.511 18 C 0.053 3.947 19 C -0.112 4.112 20 C -0.065 4.065 21 C -0.110 4.110 22 C -0.081 4.081 23 S -0.277 6.277 24 C -0.081 4.081 25 C -0.116 4.116 26 C -0.098 4.098 27 C 0.050 3.950 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.029 0.971 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 8.041 22.699 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 H 0.070 0.930 4 C 0.294 3.706 5 O -0.394 6.394 6 N -0.339 5.339 7 C -0.063 4.063 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.237 5.237 18 C -0.075 4.075 19 C -0.149 4.149 20 C -0.065 4.065 21 C -0.149 4.149 22 C -0.229 4.229 23 S -0.051 6.051 24 C -0.229 4.229 25 C -0.154 4.154 26 C -0.136 4.136 27 C -0.077 4.077 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.047 0.953 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.367 7.248 23.499 24.594 hybrid contribution -0.906 0.139 -1.860 2.074 sum -1.273 7.387 21.639 22.900 Atomic orbital electron populations 1.21768 0.92477 1.03568 1.01851 1.21671 0.97178 0.95625 0.90187 0.92967 1.20058 0.78974 0.87732 0.83840 1.90678 1.50903 1.14064 1.83774 1.48196 1.61679 1.09378 1.14604 1.21668 0.99103 0.82597 1.02890 1.19254 0.93780 0.92915 0.81200 1.21415 0.93217 1.35498 1.06053 0.92498 1.24936 0.95617 0.95898 0.97709 1.69931 1.16470 1.42257 1.24865 0.86502 0.82053 0.78590 0.80318 1.20684 1.21086 1.19871 1.61661 1.11018 1.50857 1.00146 1.22159 1.00556 0.95044 0.89696 1.21853 0.94734 1.01492 0.96851 1.20649 0.95634 0.94723 0.95527 1.21782 1.01007 0.99691 0.92400 1.23530 1.03274 0.94662 1.01451 1.86850 1.84934 1.10830 1.22510 1.23545 1.04396 1.01039 0.93924 1.21900 1.00299 0.95302 0.97927 1.21579 1.00256 0.99805 0.91974 1.22225 0.86883 0.98308 1.00324 0.91560 0.90833 0.92167 0.93957 0.90815 0.92364 0.95091 0.94069 0.92743 0.90414 0.95025 0.91429 0.90568 0.90482 0.90671 0.88094 0.89361 0.88189 0.89343 0.90679 0.90464 0.91486 0.90461 0.95276 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.56 37.16 0.32 -1.52 16 2 C 0.07 0.98 1.62 -68.87 -0.11 0.87 16 3 H 0.05 0.70 6.75 -51.93 -0.35 0.35 16 4 C 0.51 10.43 5.62 -10.99 -0.06 10.37 16 5 O -0.52 -13.00 15.07 5.56 0.08 -12.91 16 6 N -0.61 -12.71 2.86 -182.96 -0.52 -13.24 16 7 C 0.08 1.28 9.88 59.84 0.59 1.87 16 8 C 0.25 6.45 5.14 -5.19 -0.03 6.43 16 9 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 13 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 N -0.51 -7.11 4.29 -228.09 -0.98 -8.09 16 18 C 0.05 0.55 4.84 -3.84 -0.02 0.54 16 19 C -0.11 -1.02 3.58 -26.59 -0.10 -1.11 16 20 C -0.07 -0.58 0.51 -154.56 -0.08 -0.66 16 21 C -0.11 -0.88 4.71 -26.83 -0.13 -1.01 16 22 C -0.08 -0.61 6.00 37.20 0.22 -0.39 16 23 S -0.28 -2.51 22.33 -107.50 -2.40 -4.91 16 24 C -0.08 -0.64 5.91 37.20 0.22 -0.42 16 25 C -0.12 -0.99 4.03 -26.83 -0.11 -1.10 16 26 C -0.10 -1.12 4.84 -26.60 -0.13 -1.25 16 27 C 0.05 0.70 4.85 -3.84 -0.02 0.68 16 28 H 0.07 0.88 7.23 -51.92 -0.38 0.50 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.62 6.59 -51.93 -0.34 0.27 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 33 H 0.06 0.75 5.40 -51.93 -0.28 0.47 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.21 7.50 -51.93 -0.39 0.82 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 0.76 6.15 -51.93 -0.32 0.45 16 38 H 0.03 0.31 6.41 -51.93 -0.33 -0.02 16 39 H 0.07 0.54 4.51 -51.93 -0.23 0.31 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.64 6.19 -51.93 -0.32 0.32 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.67 5.74 -51.93 -0.30 0.37 16 47 H 0.07 0.66 8.04 -51.93 -0.42 0.25 16 48 H 0.08 0.71 4.91 -51.93 -0.26 0.45 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 51 H 0.03 0.37 6.24 -51.93 -0.32 0.05 16 52 H 0.09 1.60 5.96 -51.93 -0.31 1.29 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -32.50 386.66 -10.85 -43.35 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.73 Total: -0.78 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.16 Total: -0.26 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.76 Total: -47.26 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.40 Total: -4.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.50 -10.85 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602949892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.971 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds