Wall clock time and date at job start Sat Apr 11 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47310 * 2 1 4 4 C 1.50701 * 109.47173 * 239.99743 * 2 1 3 5 5 O 1.21278 * 119.99732 * 270.73753 * 4 2 1 6 6 N 1.34775 * 119.99739 * 90.73702 * 4 2 1 7 7 C 1.46496 * 120.00419 * 354.78579 * 6 4 2 8 8 C 1.46506 * 119.99741 * 174.78085 * 6 4 2 9 9 C 1.50695 * 109.47279 * 90.00203 * 8 6 4 10 10 H 1.08007 * 119.99644 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00326 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99817 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00316 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47247 * 90.00049 * 13 11 9 15 15 H 1.48500 * 109.47384 * 210.00117 * 13 11 9 16 16 H 1.48500 * 109.46986 * 330.00430 * 13 11 9 17 17 N 1.46894 * 109.47084 * 119.99830 * 2 1 3 18 18 C 1.46846 * 111.00006 * 299.27180 * 17 2 1 19 19 C 1.53024 * 109.54316 * 174.24843 * 18 17 2 20 20 C 1.53239 * 109.23828 * 59.33276 * 19 18 17 21 21 C 1.52713 * 109.33656 * 182.57945 * 20 19 18 22 22 C 1.53085 * 109.88733 * 310.62590 * 21 20 19 23 23 S 1.81753 * 108.85193 * 296.80083 * 22 21 20 24 24 C 1.81753 * 102.20524 * 53.18148 * 23 22 21 25 25 C 1.52720 * 109.33720 * 61.54718 * 20 19 18 26 26 C 1.53219 * 108.94442 * 302.07864 * 20 19 18 27 27 C 1.46846 * 111.00102 * 175.07738 * 17 2 1 28 28 H 1.09007 * 109.46788 * 65.43844 * 1 2 3 29 29 H 1.08992 * 109.47088 * 185.44063 * 1 2 3 30 30 H 1.09000 * 109.47166 * 305.44421 * 1 2 3 31 31 H 1.08996 * 109.47424 * 94.64623 * 7 6 4 32 32 H 1.09007 * 109.47065 * 214.64920 * 7 6 4 33 33 H 1.09004 * 109.47080 * 334.64244 * 7 6 4 34 34 H 1.08995 * 109.47342 * 210.00208 * 8 6 4 35 35 H 1.09000 * 109.47011 * 329.99771 * 8 6 4 36 36 H 0.96999 * 119.99748 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.46107 * 54.22613 * 18 17 2 38 38 H 1.09001 * 109.46283 * 294.26985 * 18 17 2 39 39 H 1.09002 * 109.50966 * 179.26692 * 19 18 17 40 40 H 1.09002 * 109.50568 * 299.35560 * 19 18 17 41 41 H 1.09006 * 109.40479 * 70.75465 * 21 20 19 42 42 H 1.09001 * 109.40530 * 190.50144 * 21 20 19 43 43 H 1.09000 * 109.57764 * 176.98807 * 22 21 20 44 44 H 1.09003 * 109.57515 * 56.60962 * 22 21 20 45 45 H 1.09002 * 109.57079 * 187.00603 * 24 23 22 46 46 H 1.08997 * 109.57153 * 66.63810 * 24 23 22 47 47 H 1.09005 * 109.40310 * 169.51434 * 25 20 19 48 48 H 1.09003 * 109.39919 * 289.25092 * 25 20 19 49 49 H 1.08999 * 109.51259 * 177.86035 * 26 20 19 50 50 H 1.08996 * 109.51103 * 298.00257 * 26 20 19 51 51 H 1.09002 * 109.46228 * 65.74159 * 27 17 2 52 52 H 1.08995 * 109.46199 * 305.77445 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2218 -1.9081 -1.2042 6 7 2.2711 -0.0149 -2.3599 7 6 1.9352 1.4094 -2.4279 8 6 2.8668 -0.6832 -3.5196 9 6 1.7738 -1.2412 -4.3941 10 1 0.7388 -1.1114 -4.1138 11 6 2.0948 -1.9174 -5.5519 12 7 3.3551 -2.0759 -5.8929 13 14 0.7399 -2.6098 -6.6355 14 1 0.3377 -1.5901 -7.6374 15 1 1.2363 -3.8220 -7.3350 16 1 -0.4314 -2.9675 -5.7957 17 7 2.0197 -0.6924 1.1994 18 6 1.5631 -0.0165 2.4205 19 6 1.9686 -0.8411 3.6441 20 6 3.4931 -0.9954 3.6664 21 6 3.8954 -1.8717 4.8506 22 6 3.2118 -1.3704 6.1253 23 16 3.8017 0.3105 6.4859 24 6 3.4871 1.1729 4.9172 25 6 4.1394 0.3837 3.7792 26 6 3.9445 -1.6629 2.3632 27 6 3.4828 -0.8148 1.1760 28 1 -0.3633 0.4272 -0.9348 29 1 -0.3633 -1.0230 0.0974 30 1 -0.3633 0.5960 0.8372 31 1 2.8152 2.0026 -2.1794 32 1 1.6032 1.6566 -3.4363 33 1 1.1370 1.6287 -1.7187 34 1 3.4569 0.0347 -4.0892 35 1 3.5106 -1.4947 -3.1802 36 1 3.5810 -2.5519 -6.7073 37 1 0.4782 0.0858 2.3949 38 1 2.0195 0.9715 2.4810 39 1 1.6409 -0.3324 4.5508 40 1 1.5031 -1.8253 3.5904 41 1 3.5931 -2.9012 4.6585 42 1 4.9769 -1.8314 4.9800 43 1 3.4597 -2.0305 6.9565 44 1 2.1318 -1.3547 5.9786 45 1 3.9149 2.1746 4.9590 46 1 2.4127 1.2397 4.7463 47 1 5.2043 0.2690 3.9819 48 1 4.0067 0.9235 2.8416 49 1 5.0315 -1.7428 2.3526 50 1 3.5050 -2.6578 2.2925 51 1 3.9313 0.1766 1.2419 52 1 3.7925 -1.2922 0.2464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602949892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:26 Heat of formation + Delta-G solvation = -51.607032 kcal Electronic energy + Delta-G solvation = -29476.888695 eV Core-core repulsion = 25794.441459 eV Total energy + Delta-G solvation = -3682.447236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69934 -40.43794 -37.37310 -36.49712 -34.77869 -33.37229 -32.56578 -31.80429 -30.20020 -29.59064 -27.42659 -26.30700 -25.89632 -24.42527 -24.13298 -22.97283 -22.10235 -19.86092 -19.30693 -18.69076 -18.11480 -17.70984 -17.45479 -16.79194 -16.37048 -16.10074 -15.90093 -15.63676 -15.46519 -15.20444 -14.93593 -14.71375 -14.34517 -14.24216 -14.15434 -13.96353 -13.68009 -13.54458 -13.46659 -13.27203 -13.04661 -12.99242 -12.80688 -12.77197 -12.65921 -12.56967 -12.40854 -12.37158 -12.21531 -12.12618 -12.06794 -11.72469 -11.28633 -11.13913 -11.04264 -10.65569 -10.55580 -10.39382 -9.42019 -9.17190 -8.61786 -8.23587 -6.38173 0.89253 1.34662 1.38025 1.48312 1.64202 1.82158 2.22746 2.40750 2.91935 3.05775 3.48855 3.62197 3.67524 3.68110 4.00989 4.04767 4.07608 4.11626 4.19871 4.25486 4.31818 4.35947 4.39064 4.41707 4.45911 4.54667 4.65065 4.65901 4.68620 4.73083 4.82442 4.82977 4.87238 4.90794 4.96435 4.98393 5.00350 5.04529 5.08818 5.17198 5.19823 5.20260 5.30525 5.34572 5.45798 5.55026 5.82131 6.00839 6.05354 6.20900 6.69556 6.80285 7.28066 7.51958 8.83421 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.002507 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.571941 B =11164.212557 C =11360.179618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.080 0.920 4 C 0.501 3.499 5 O -0.578 6.578 6 N -0.614 5.614 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.539 4.539 10 H 0.051 0.949 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.274 1.274 17 N -0.530 5.530 18 C 0.053 3.947 19 C -0.107 4.107 20 C -0.057 4.057 21 C -0.107 4.107 22 C -0.072 4.072 23 S -0.308 6.308 24 C -0.072 4.072 25 C -0.111 4.111 26 C -0.093 4.093 27 C 0.056 3.944 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.023 0.977 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.043 0.957 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 10.076 24.383 26.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 H 0.098 0.902 4 C 0.289 3.711 5 O -0.457 6.457 6 N -0.346 5.346 7 C -0.066 4.066 8 C 0.141 3.859 9 C -0.577 4.577 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.199 1.199 17 N -0.256 5.256 18 C -0.074 4.074 19 C -0.144 4.144 20 C -0.058 4.058 21 C -0.145 4.145 22 C -0.220 4.220 23 S -0.083 6.083 24 C -0.219 4.219 25 C -0.149 4.149 26 C -0.131 4.131 27 C -0.072 4.072 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.041 0.959 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.127 0.873 46 H 0.116 0.884 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.061 0.939 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.278 9.340 25.204 26.976 hybrid contribution -0.247 -0.511 -2.368 2.435 sum -2.525 8.829 22.837 24.614 Atomic orbital electron populations 1.21786 0.90711 1.03032 1.03678 1.21600 0.98250 0.95840 0.87709 0.90245 1.21148 0.77529 0.87338 0.85070 1.90638 1.53231 1.16963 1.84840 1.48224 1.61375 1.11547 1.13470 1.21955 1.01432 0.79429 1.03759 1.18695 0.92909 0.91656 0.82595 1.21670 0.93308 1.36036 1.06729 0.93037 1.25865 0.98109 0.96064 0.99210 1.70051 1.18503 1.42876 1.25508 0.85420 0.78713 0.78220 0.78497 1.18657 1.20640 1.19862 1.61623 1.10783 1.52116 1.01074 1.22292 1.01398 0.95598 0.88090 1.21829 0.94355 1.01077 0.97147 1.20564 0.95860 0.95080 0.94263 1.21728 1.00951 0.99555 0.92305 1.23521 1.03453 0.93722 1.01259 1.87015 1.85329 1.12192 1.23716 1.23532 1.04870 1.01035 0.92491 1.21830 1.00147 0.94805 0.98145 1.21510 1.00289 0.98650 0.92670 1.22074 0.87449 0.98803 0.98892 0.91488 0.93091 0.88025 0.91484 0.91466 0.88780 0.95941 0.98812 0.92417 0.89069 0.93328 0.89424 0.91616 0.90402 0.90950 0.87162 0.88601 0.87286 0.88394 0.91069 0.90716 0.91219 0.92428 0.93924 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.56 71.98 0.62 -2.61 16 2 C 0.08 2.21 1.62 44.17 0.07 2.28 16 3 H 0.08 1.84 6.75 -2.38 -0.02 1.83 16 4 C 0.50 21.10 5.62 87.66 0.49 21.59 16 5 O -0.58 -30.79 15.07 -3.02 -0.05 -30.84 16 6 N -0.61 -26.33 2.86 -851.14 -2.43 -28.77 16 7 C 0.08 2.28 9.88 127.77 1.26 3.54 16 8 C 0.26 14.42 5.14 85.63 0.44 14.87 16 9 C -0.54 -31.57 9.39 25.60 0.24 -31.32 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 11 C 0.01 0.37 5.46 84.65 0.46 0.83 16 12 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 13 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 17 N -0.53 -14.21 4.29 -875.56 -3.75 -17.96 16 18 C 0.05 0.93 4.84 86.32 0.42 1.35 16 19 C -0.11 -1.67 3.58 30.68 0.11 -1.56 16 20 C -0.06 -0.94 0.51 -52.22 -0.03 -0.97 16 21 C -0.11 -1.55 4.71 30.53 0.14 -1.40 16 22 C -0.07 -0.92 6.00 72.01 0.43 -0.49 16 23 S -0.31 -4.87 22.33 -56.49 -1.26 -6.14 16 24 C -0.07 -0.91 5.91 72.01 0.43 -0.49 16 25 C -0.11 -1.64 4.03 30.53 0.12 -1.52 16 26 C -0.09 -2.15 4.84 30.68 0.15 -2.01 16 27 C 0.06 1.57 4.85 86.32 0.42 1.99 16 28 H 0.07 1.60 7.23 -2.38 -0.02 1.58 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.61 6.59 -2.39 -0.02 1.59 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.10 8.11 -2.38 -0.02 2.08 16 33 H 0.09 2.12 5.40 -2.39 -0.01 2.11 16 34 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 35 H -0.01 -0.40 7.50 -2.39 -0.02 -0.41 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.09 1.40 6.15 -2.39 -0.01 1.38 16 38 H 0.05 0.73 6.41 -2.39 -0.02 0.71 16 39 H 0.09 1.07 4.51 -2.39 -0.01 1.06 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 42 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.10 1.11 6.19 -2.39 -0.01 1.09 16 45 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.10 1.09 5.74 -2.39 -0.01 1.07 16 47 H 0.07 1.13 8.04 -2.38 -0.02 1.11 16 48 H 0.07 1.17 4.91 -2.39 -0.01 1.16 16 49 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 51 H 0.04 1.06 6.24 -2.39 -0.01 1.04 16 52 H 0.04 1.53 5.96 -2.39 -0.01 1.52 16 Total: -1.00 -75.68 386.66 1.50 -74.18 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.91 Total: 14.55 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.78 Total: 4.08 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -5.90 Total: -103.39 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -1.26 Total: -6.14 kcal Total: -75.68 1.50 -74.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602949892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.575 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds