Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48494 * 109.47406 * 240.00157 * 3 2 1 5 5 H 1.48500 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46865 * 120.00068 * 3 2 1 7 7 C 1.38817 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00340 * 163.07888 * 7 2 1 9 9 N 1.36944 * 119.99490 * 343.07294 * 7 2 1 10 10 C 1.46923 * 120.63482 * 331.85186 * 9 7 2 11 11 C 1.53187 * 108.77612 * 233.58653 * 10 9 7 12 12 C 1.53044 * 109.31020 * 305.36192 * 11 10 9 13 13 N 1.46897 * 109.46088 * 181.38593 * 12 11 10 14 14 C 1.46900 * 111.00170 * 154.97128 * 13 12 11 15 15 C 1.50697 * 109.47275 * 179.97438 * 14 13 12 16 16 C 1.39869 * 126.03867 * 90.03020 * 15 14 13 17 17 N 1.30833 * 108.20621 * 179.97438 * 16 15 14 18 18 N 1.40080 * 108.20285 * 359.97438 * 17 16 15 19 19 C 1.46501 * 126.03655 * 179.97438 * 18 17 16 20 20 C 1.50693 * 109.47707 * 305.00426 * 19 18 17 21 21 C 1.38240 * 120.00039 * 269.73072 * 20 19 18 22 22 C 1.38232 * 119.99900 * 179.76325 * 21 20 19 23 23 C 1.38236 * 119.99983 * 0.50121 * 22 21 20 24 24 C 1.38236 * 120.00062 * 359.74939 * 23 22 21 25 25 C 1.38226 * 119.99856 * 359.97438 * 24 23 22 26 26 C 1.34946 * 107.92866 * 0.02562 * 18 17 16 27 27 C 1.53037 * 109.52660 * 61.37174 * 12 11 10 28 28 C 1.46929 * 120.62686 * 151.82129 * 9 7 2 29 29 H 0.97001 * 119.99625 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.58783 * 113.79302 * 10 9 7 31 31 H 1.09006 * 109.69898 * 353.43580 * 10 9 7 32 32 H 1.08998 * 109.50286 * 185.41408 * 11 10 9 33 33 H 1.09001 * 109.52538 * 65.32555 * 11 10 9 34 34 H 1.08997 * 109.46214 * 301.35963 * 12 11 10 35 35 H 1.00898 * 111.00056 * 31.01965 * 13 12 11 36 36 H 1.09005 * 109.46783 * 60.00146 * 14 13 12 37 37 H 1.08996 * 109.47294 * 300.00258 * 14 13 12 38 38 H 1.08003 * 125.89841 * 359.70923 * 16 15 14 39 39 H 1.09003 * 109.46895 * 65.00917 * 19 18 17 40 40 H 1.09005 * 109.47116 * 184.99923 * 19 18 17 41 41 H 1.08001 * 119.99657 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00066 * 180.22872 * 22 21 20 43 43 H 1.08006 * 119.99761 * 179.72449 * 23 22 21 44 44 H 1.08002 * 119.99898 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99963 * 179.97438 * 25 24 23 46 46 H 1.08004 * 126.12907 * 180.02562 * 26 18 17 47 47 H 1.09001 * 109.49980 * 58.58503 * 27 12 11 48 48 H 1.09003 * 109.49664 * 178.67388 * 27 12 11 49 49 H 1.08993 * 109.59018 * 246.20439 * 28 9 7 50 50 H 1.09005 * 109.58551 * 6.49132 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3443 10 6 0.2260 -2.3410 1.2658 11 6 0.4973 -3.3210 2.4116 12 6 0.8118 -4.7022 1.8324 13 7 1.0399 -5.6524 2.9291 14 6 0.7591 -7.0290 2.5000 15 6 1.0043 -7.9732 3.6487 16 6 0.0616 -8.3714 4.6021 17 7 0.6455 -9.1937 5.4356 18 7 1.9800 -9.3455 5.0379 19 6 2.9866 -10.1801 5.6985 20 6 3.0822 -9.7959 7.1525 21 6 3.9739 -8.8180 7.5519 22 6 4.0581 -8.4622 8.8850 23 6 3.2579 -9.0915 9.8202 24 6 2.3698 -10.0730 9.4215 25 6 2.2816 -10.4248 8.0877 26 6 2.1750 -8.5863 3.9394 27 6 2.0674 -4.6178 0.9614 28 6 1.8138 -3.6528 -0.2010 29 1 -0.4849 0.8401 0.0004 30 1 -0.6770 -2.6411 0.7344 31 1 0.0967 -1.3360 1.6676 32 1 -0.3833 -3.3865 3.0506 33 1 1.3468 -2.9702 2.9976 34 1 -0.0282 -5.0418 1.2265 35 1 0.4915 -5.4074 3.7398 36 1 1.4136 -7.2911 1.6687 37 1 -0.2806 -7.1055 2.1819 38 1 -0.9691 -8.0517 4.6456 39 1 2.6992 -11.2284 5.6177 40 1 3.9540 -10.0307 5.2189 41 1 4.6024 -8.3297 6.8219 42 1 4.7521 -7.6956 9.1965 43 1 3.3268 -8.8165 10.8624 44 1 1.7449 -10.5649 10.1522 45 1 1.5881 -11.1919 7.7762 46 1 3.0996 -8.4864 3.3902 47 1 2.9022 -4.2545 1.5608 48 1 2.3045 -5.6064 0.5682 49 1 1.0403 -4.0598 -0.8520 50 1 2.7333 -3.5124 -0.7694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609334917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = 126.435700 kcal Electronic energy + Delta-G solvation = -28250.662180 eV Core-core repulsion = 24472.784256 eV Total energy + Delta-G solvation = -3777.877924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31916 -39.47998 -37.95772 -35.32451 -34.24703 -32.35328 -31.25842 -30.99999 -30.73658 -29.74985 -28.74475 -26.76888 -25.00263 -23.77222 -22.94278 -22.28055 -22.04727 -21.14568 -20.80668 -20.09673 -18.97652 -17.33930 -16.92926 -16.61981 -15.95440 -15.56059 -15.22369 -15.00766 -14.74397 -14.40551 -14.23272 -13.95481 -13.76167 -13.51469 -13.42184 -13.38448 -12.98595 -12.91188 -12.87496 -12.61785 -12.16252 -12.05009 -11.88412 -11.52899 -11.37653 -11.29187 -10.97952 -10.77396 -10.66450 -10.44223 -10.28219 -10.14508 -9.87770 -9.53311 -9.49594 -9.41029 -9.25371 -9.22045 -8.48148 -8.40859 -7.99922 -6.60872 -5.73800 -3.15642 0.85030 1.07336 1.83900 2.44836 2.74767 3.41866 3.47293 3.49028 3.49147 4.10017 4.32335 4.54410 4.62436 4.63753 4.69550 4.76896 4.77795 4.92168 4.94906 5.15485 5.26177 5.32131 5.37563 5.43413 5.51645 5.57325 5.61507 5.68076 5.73711 5.76968 5.87360 6.03189 6.08894 6.16133 6.17520 6.19930 6.23429 6.42123 6.56012 6.60345 6.62354 6.62984 6.71658 6.74818 6.89561 6.91080 7.11732 7.43785 7.48965 7.63409 7.71758 7.77067 7.84854 8.50983 9.27032 9.90880 10.48092 11.34844 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.001932 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.388410 B =14486.830570 C =15295.793590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.140 4.140 12 C 0.096 3.904 13 N -0.685 5.685 14 C 0.137 3.863 15 C -0.227 4.227 16 C 0.051 3.949 17 N -0.292 5.292 18 N -0.373 5.373 19 C 0.178 3.822 20 C -0.109 4.109 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.125 4.125 25 C -0.084 4.084 26 C 0.072 3.928 27 C -0.115 4.115 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.016 0.984 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.336 0.664 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.178 0.822 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.172 0.828 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.014 0.986 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -23.466 15.513 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.180 4.180 12 C -0.013 4.013 13 N -0.316 5.316 14 C 0.007 3.993 15 C -0.239 4.239 16 C -0.136 4.136 17 N -0.113 5.113 18 N -0.155 5.155 19 C 0.057 3.943 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.103 4.103 26 C -0.074 4.074 27 C -0.155 4.155 28 C 0.017 3.983 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.195 0.805 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.189 0.811 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.032 0.968 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.701 -24.192 16.454 29.808 hybrid contribution -0.482 1.453 -0.689 1.678 sum 5.219 -22.740 15.765 28.158 Atomic orbital electron populations 1.70022 1.05246 1.25514 1.54141 1.25044 0.95290 0.98382 1.01077 0.86374 0.78903 0.83406 0.78113 1.20918 1.21694 1.21060 1.19151 0.92504 0.84868 1.41406 0.91794 1.44039 1.35851 1.01596 1.49967 1.20728 0.88603 0.98066 0.87864 1.22388 1.00053 0.95426 1.00113 1.21464 0.96699 0.91771 0.91357 1.60670 1.61870 1.00952 1.08112 1.20143 0.98682 0.86954 0.93519 1.20030 0.93434 1.07069 1.03323 1.23796 1.00179 0.96460 0.93197 1.77311 0.89133 1.21880 1.22985 1.48560 1.08421 1.36702 1.21825 1.20518 0.89939 0.94237 0.89632 1.19794 0.98254 0.98572 0.94395 1.21079 0.98088 0.96143 0.96352 1.21155 0.99828 1.00031 0.93144 1.21233 0.95894 0.96149 0.99671 1.21158 0.99006 0.98140 0.96001 1.21023 0.97231 0.99209 0.92789 1.22328 1.00105 0.94502 0.90515 1.21989 0.97443 0.98314 0.97783 1.20931 0.97438 0.86948 0.92944 0.93654 0.96637 0.89438 0.93712 0.91965 0.94729 0.84647 0.90814 0.94946 0.80520 0.89158 0.87839 0.85978 0.85825 0.85995 0.85924 0.85907 0.81092 0.91908 0.93649 0.96822 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.95 9.58 -15.05 -0.14 -7.10 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -15.08 2.99 -172.32 -0.52 -15.60 16 10 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 11 C -0.14 -2.72 5.36 -26.61 -0.14 -2.87 16 12 C 0.10 1.65 2.46 -67.67 -0.17 1.48 16 13 N -0.68 -9.98 6.30 -107.95 -0.68 -10.66 16 14 C 0.14 1.71 5.96 -4.98 -0.03 1.68 16 15 C -0.23 -2.67 5.61 -105.05 -0.59 -3.26 16 16 C 0.05 0.60 11.96 -17.37 -0.21 0.39 16 17 N -0.29 -3.66 12.41 30.62 0.38 -3.28 16 18 N -0.37 -3.92 3.67 -62.54 -0.23 -4.15 16 19 C 0.18 1.32 6.64 -5.20 -0.03 1.29 16 20 C -0.11 -0.94 5.31 -104.62 -0.56 -1.50 16 21 C -0.10 -0.84 9.70 -39.58 -0.38 -1.23 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.13 -0.99 10.05 -39.59 -0.40 -1.39 16 25 C -0.08 -0.72 9.70 -39.59 -0.38 -1.10 16 26 C 0.07 0.76 11.36 -17.22 -0.20 0.56 16 27 C -0.12 -2.08 5.59 -26.61 -0.15 -2.23 16 28 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 32 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 35 H 0.34 4.80 8.32 -39.29 -0.33 4.47 16 36 H 0.07 0.92 7.41 -51.93 -0.38 0.53 16 37 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 38 H 0.18 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.10 0.51 8.01 -51.93 -0.42 0.10 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.04 0.72 7.42 -51.93 -0.39 0.33 16 49 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -32.29 405.96 -11.75 -44.04 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.10 Total: 3.31 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -4.31 Total: -10.77 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.42 Total: -59.60 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.29 -11.75 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.472 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds