Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48494 * 109.47406 * 240.00157 * 3 2 1 5 5 H 1.48500 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46865 * 120.00068 * 3 2 1 7 7 C 1.38817 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00340 * 163.07888 * 7 2 1 9 9 N 1.36944 * 119.99490 * 343.07294 * 7 2 1 10 10 C 1.46923 * 120.63482 * 331.85186 * 9 7 2 11 11 C 1.53187 * 108.77612 * 233.58653 * 10 9 7 12 12 C 1.53044 * 109.31020 * 305.36192 * 11 10 9 13 13 N 1.46897 * 109.46088 * 181.38593 * 12 11 10 14 14 C 1.46900 * 111.00170 * 154.97128 * 13 12 11 15 15 C 1.50697 * 109.47275 * 179.97438 * 14 13 12 16 16 C 1.39869 * 126.03867 * 90.03020 * 15 14 13 17 17 N 1.30833 * 108.20621 * 179.97438 * 16 15 14 18 18 N 1.40080 * 108.20285 * 359.97438 * 17 16 15 19 19 C 1.46501 * 126.03655 * 179.97438 * 18 17 16 20 20 C 1.50693 * 109.47707 * 305.00426 * 19 18 17 21 21 C 1.38240 * 120.00039 * 269.73072 * 20 19 18 22 22 C 1.38232 * 119.99900 * 179.76325 * 21 20 19 23 23 C 1.38236 * 119.99983 * 0.50121 * 22 21 20 24 24 C 1.38236 * 120.00062 * 359.74939 * 23 22 21 25 25 C 1.38226 * 119.99856 * 359.97438 * 24 23 22 26 26 C 1.34946 * 107.92866 * 0.02562 * 18 17 16 27 27 C 1.53037 * 109.52660 * 61.37174 * 12 11 10 28 28 C 1.46929 * 120.62686 * 151.82129 * 9 7 2 29 29 H 0.97001 * 119.99625 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.58783 * 113.79302 * 10 9 7 31 31 H 1.09006 * 109.69898 * 353.43580 * 10 9 7 32 32 H 1.08998 * 109.50286 * 185.41408 * 11 10 9 33 33 H 1.09001 * 109.52538 * 65.32555 * 11 10 9 34 34 H 1.08997 * 109.46214 * 301.35963 * 12 11 10 35 35 H 1.00898 * 111.00056 * 31.01965 * 13 12 11 36 36 H 1.09005 * 109.46783 * 60.00146 * 14 13 12 37 37 H 1.08996 * 109.47294 * 300.00258 * 14 13 12 38 38 H 1.08003 * 125.89841 * 359.70923 * 16 15 14 39 39 H 1.09003 * 109.46895 * 65.00917 * 19 18 17 40 40 H 1.09005 * 109.47116 * 184.99923 * 19 18 17 41 41 H 1.08001 * 119.99657 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00066 * 180.22872 * 22 21 20 43 43 H 1.08006 * 119.99761 * 179.72449 * 23 22 21 44 44 H 1.08002 * 119.99898 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99963 * 179.97438 * 25 24 23 46 46 H 1.08004 * 126.12907 * 180.02562 * 26 18 17 47 47 H 1.09001 * 109.49980 * 58.58503 * 27 12 11 48 48 H 1.09003 * 109.49664 * 178.67388 * 27 12 11 49 49 H 1.08993 * 109.59018 * 246.20439 * 28 9 7 50 50 H 1.09005 * 109.58551 * 6.49132 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3443 10 6 0.2260 -2.3410 1.2658 11 6 0.4973 -3.3210 2.4116 12 6 0.8118 -4.7022 1.8324 13 7 1.0399 -5.6524 2.9291 14 6 0.7591 -7.0290 2.5000 15 6 1.0043 -7.9732 3.6487 16 6 0.0616 -8.3714 4.6021 17 7 0.6455 -9.1937 5.4356 18 7 1.9800 -9.3455 5.0379 19 6 2.9866 -10.1801 5.6985 20 6 3.0822 -9.7959 7.1525 21 6 3.9739 -8.8180 7.5519 22 6 4.0581 -8.4622 8.8850 23 6 3.2579 -9.0915 9.8202 24 6 2.3698 -10.0730 9.4215 25 6 2.2816 -10.4248 8.0877 26 6 2.1750 -8.5863 3.9394 27 6 2.0674 -4.6178 0.9614 28 6 1.8138 -3.6528 -0.2010 29 1 -0.4849 0.8401 0.0004 30 1 -0.6770 -2.6411 0.7344 31 1 0.0967 -1.3360 1.6676 32 1 -0.3833 -3.3865 3.0506 33 1 1.3468 -2.9702 2.9976 34 1 -0.0282 -5.0418 1.2265 35 1 0.4915 -5.4074 3.7398 36 1 1.4136 -7.2911 1.6687 37 1 -0.2806 -7.1055 2.1819 38 1 -0.9691 -8.0517 4.6456 39 1 2.6992 -11.2284 5.6177 40 1 3.9540 -10.0307 5.2189 41 1 4.6024 -8.3297 6.8219 42 1 4.7521 -7.6956 9.1965 43 1 3.3268 -8.8165 10.8624 44 1 1.7449 -10.5649 10.1522 45 1 1.5881 -11.1919 7.7762 46 1 3.0996 -8.4864 3.3902 47 1 2.9022 -4.2545 1.5608 48 1 2.3045 -5.6064 0.5682 49 1 1.0403 -4.0598 -0.8520 50 1 2.7333 -3.5124 -0.7694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609334917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = 108.640761 kcal Electronic energy + Delta-G solvation = -28251.433827 eV Core-core repulsion = 24472.784256 eV Total energy + Delta-G solvation = -3778.649571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11441 -40.07348 -39.51548 -36.74070 -35.09951 -34.01295 -32.22998 -31.84275 -31.70234 -31.38795 -30.09948 -27.63001 -26.55090 -25.09271 -23.73320 -23.52867 -22.92686 -22.79568 -21.54082 -20.97697 -20.58912 -18.70313 -17.97475 -17.53211 -16.87240 -16.58831 -16.46583 -16.10854 -15.86446 -15.63117 -15.28489 -15.25989 -15.10693 -14.78795 -14.63409 -14.33183 -14.11529 -13.93820 -13.72025 -13.51456 -13.44742 -13.19865 -13.15901 -12.96336 -12.73600 -12.52019 -12.38793 -12.11985 -12.07031 -11.96490 -11.92925 -11.75076 -11.35707 -11.20783 -11.09495 -10.51073 -10.29924 -9.85427 -9.82491 -9.39392 -9.12061 -8.65468 -7.85425 -5.30500 0.24630 0.47159 1.04613 1.47549 1.50409 1.57022 1.76720 1.87524 2.53144 2.88899 3.27480 3.47273 3.52594 3.74115 3.78638 3.96352 4.06882 4.08804 4.10570 4.16215 4.24461 4.27451 4.40541 4.46108 4.54813 4.56748 4.59828 4.60722 4.69418 4.75933 4.85162 4.91777 4.93009 5.02411 5.03574 5.11112 5.13396 5.18025 5.30610 5.32840 5.45664 5.50804 5.56967 5.57996 5.58486 5.67227 5.74884 5.78616 6.05190 6.18209 6.28207 6.41867 6.59434 6.82149 7.17171 7.89122 8.40955 9.20887 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.001932 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.388410 B =14486.830570 C =15295.793590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.126 4.126 12 C 0.107 3.893 13 N -0.681 5.681 14 C 0.143 3.857 15 C -0.243 4.243 16 C 0.041 3.959 17 N -0.320 5.320 18 N -0.370 5.370 19 C 0.171 3.829 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.135 4.135 25 C -0.098 4.098 26 C 0.076 3.924 27 C -0.101 4.101 28 C 0.140 3.860 29 H 0.250 0.750 30 H -0.005 1.005 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.339 0.661 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.188 0.812 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.125 0.875 46 H 0.197 0.803 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.012 0.988 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -24.837 16.157 30.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.165 4.165 12 C -0.002 4.002 13 N -0.312 5.312 14 C 0.014 3.986 15 C -0.255 4.255 16 C -0.145 4.145 17 N -0.141 5.141 18 N -0.152 5.152 19 C 0.051 3.949 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.154 4.154 23 C -0.138 4.138 24 C -0.153 4.153 25 C -0.117 4.117 26 C -0.071 4.071 27 C -0.141 4.141 28 C 0.014 3.986 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.157 0.843 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.205 0.795 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.143 0.857 46 H 0.214 0.786 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.030 0.970 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.157 -25.609 17.112 31.621 hybrid contribution -0.911 1.794 -0.868 2.191 sum 6.246 -23.815 16.244 29.497 Atomic orbital electron populations 1.70179 1.06651 1.25862 1.55525 1.25816 0.96084 1.01537 1.01396 0.85344 0.77576 0.79212 0.78344 1.19996 1.22025 1.20524 1.19486 0.92810 0.86114 1.40792 0.91679 1.44321 1.35932 1.02462 1.50733 1.20530 0.87766 0.97469 0.88896 1.22147 1.00468 0.95665 0.98260 1.21211 0.96142 0.90976 0.91880 1.60615 1.61967 1.01500 1.07145 1.20099 0.98933 0.85606 0.93965 1.19991 0.94088 1.07883 1.03558 1.24063 1.00914 0.96377 0.93147 1.77270 0.90401 1.22658 1.23819 1.48788 1.08153 1.36515 1.21713 1.20831 0.90492 0.94410 0.89121 1.19949 0.98281 0.98668 0.95013 1.21301 0.98441 0.96382 0.96857 1.21439 1.00218 1.00452 0.93297 1.21523 0.95641 0.95972 1.00674 1.21435 0.99264 0.98292 0.96269 1.21207 0.97549 0.99612 0.93293 1.22745 1.00624 0.93456 0.90254 1.21799 0.97314 0.98632 0.96346 1.21094 0.97169 0.86008 0.94340 0.94142 0.98682 0.92906 0.91768 0.92999 0.94984 0.84304 0.90302 0.94752 0.79481 0.88027 0.85099 0.85061 0.84544 0.84231 0.84418 0.85678 0.78622 0.92946 0.90654 0.96989 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 11.19 21.65 0.24 -56.06 16 2 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 3 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.26 -14.71 9.58 84.03 0.81 -13.91 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -31.42 2.99 -699.10 -2.09 -33.51 16 10 C 0.18 8.87 5.30 86.36 0.46 9.33 16 11 C -0.13 -4.82 5.36 30.67 0.16 -4.65 16 12 C 0.11 3.50 2.46 44.94 0.11 3.61 16 13 N -0.68 -18.22 6.30 -495.45 -3.12 -21.34 16 14 C 0.14 3.21 5.96 85.56 0.51 3.72 16 15 C -0.24 -5.18 5.61 -20.14 -0.11 -5.30 16 16 C 0.04 0.92 11.96 85.24 1.02 1.94 16 17 N -0.32 -7.60 12.41 -57.02 -0.71 -8.30 16 18 N -0.37 -6.99 3.67 -351.79 -1.29 -8.28 16 19 C 0.17 2.17 6.64 85.63 0.57 2.74 16 20 C -0.12 -1.87 5.31 -19.87 -0.11 -1.98 16 21 C -0.11 -1.75 9.70 22.27 0.22 -1.54 16 22 C -0.14 -2.06 10.05 22.27 0.22 -1.84 16 23 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 25 C -0.10 -1.59 9.70 22.27 0.22 -1.37 16 26 C 0.08 1.40 11.36 83.54 0.95 2.35 16 27 C -0.10 -3.45 5.59 30.67 0.17 -3.28 16 28 C 0.14 5.88 6.52 86.36 0.56 6.45 16 29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.05 2.95 6.07 -2.38 -0.01 2.94 16 32 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.03 1.08 7.80 -2.39 -0.02 1.06 16 35 H 0.34 8.95 8.32 -89.70 -0.75 8.20 16 36 H 0.08 1.69 7.41 -2.38 -0.02 1.68 16 37 H 0.03 0.77 8.05 -2.39 -0.02 0.75 16 38 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 40 H 0.13 0.90 8.01 -2.38 -0.02 0.88 16 41 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 45 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.07 2.14 7.42 -2.39 -0.02 2.12 16 49 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.05 2.23 7.93 -2.38 -0.02 2.21 16 Total: -1.00 -70.02 405.96 1.86 -68.16 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.17 Total: 21.37 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 6.62 Total: -9.62 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -6.97 Total: -127.50 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.02 1.86 -68.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.802 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds