Wall clock time and date at job start Sat Apr 11 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38323 * 119.87657 * 2 1 4 4 C 1.38016 * 120.11933 * 180.02562 * 3 2 1 5 5 C 1.39325 * 119.88074 * 359.97438 * 4 3 2 6 6 C 1.48423 * 120.11967 * 179.97438 * 5 4 3 7 7 N 1.31619 * 126.03719 * 325.03414 * 6 5 4 8 8 N 1.40074 * 108.10305 * 179.97438 * 7 6 5 9 9 H 0.97001 * 125.92885 * 179.97438 * 8 7 6 10 10 C 1.35033 * 108.14425 * 359.97438 * 8 7 6 11 11 C 1.35086 * 107.97694 * 0.23181 * 10 8 7 12 12 C 1.50704 * 126.07912 * 179.77761 * 11 10 8 13 13 N 1.46903 * 109.46766 * 260.02603 * 12 11 10 14 14 C 1.46896 * 110.99831 * 179.97438 * 13 12 11 15 15 C 1.53034 * 109.46146 * 275.06722 * 14 13 12 16 16 C 1.53200 * 109.31453 * 178.61320 * 15 14 13 17 17 N 1.46932 * 108.77191 * 54.63587 * 16 15 14 18 18 C 1.36938 * 120.62858 * 126.41867 * 17 16 15 19 19 H 1.07995 * 119.99833 * 331.81183 * 18 17 16 20 20 C 1.38811 * 119.99580 * 151.82554 * 18 17 16 21 21 N 1.31616 * 120.00478 * 343.06463 * 20 18 17 22 22 Si 1.86802 * 119.99597 * 163.07757 * 20 18 17 23 23 H 1.48498 * 109.47404 * 59.99470 * 22 20 18 24 24 H 1.48508 * 109.46800 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47108 * 299.99095 * 22 20 18 26 26 C 1.46930 * 118.73589 * 306.38994 * 17 16 15 27 27 C 1.53042 * 109.46001 * 154.99713 * 14 13 12 28 28 C 1.39322 * 119.76000 * 0.28151 * 5 4 3 29 29 C 1.38026 * 119.87769 * 359.46675 * 28 5 4 30 30 H 1.09001 * 109.47149 * 90.00491 * 1 2 3 31 31 H 1.09009 * 109.46721 * 209.99423 * 1 2 3 32 32 H 1.08994 * 109.47378 * 329.99874 * 1 2 3 33 33 H 1.08000 * 119.93973 * 0.02562 * 3 2 1 34 34 H 1.08007 * 120.06211 * 179.97438 * 4 3 2 35 35 H 1.07998 * 126.01390 * 179.97438 * 10 8 7 36 36 H 1.09005 * 109.46971 * 20.01816 * 12 11 10 37 37 H 1.09000 * 109.47563 * 140.02153 * 12 11 10 38 38 H 1.00893 * 111.00188 * 56.04163 * 13 12 11 39 39 H 1.09004 * 109.46404 * 35.02616 * 14 13 12 40 40 H 1.08998 * 109.50084 * 298.56259 * 15 14 13 41 41 H 1.08997 * 109.49941 * 58.66163 * 15 14 13 42 42 H 1.08992 * 109.58583 * 294.84998 * 16 15 14 43 43 H 1.08997 * 109.70511 * 174.48762 * 16 15 14 44 44 H 0.96994 * 120.00254 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58752 * 293.81902 * 26 17 16 46 46 H 1.09002 * 109.69776 * 173.46763 * 26 17 16 47 47 H 1.09004 * 109.49730 * 301.33485 * 27 14 13 48 48 H 1.08992 * 109.49784 * 61.43897 * 27 14 13 49 49 H 1.07998 * 120.05934 * 179.70197 * 28 5 4 50 50 H 1.08002 * 119.94130 * 180.25825 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5762 1.2053 -0.0005 5 6 4.2754 0.0002 -0.0005 6 6 5.7596 0.0003 -0.0017 7 7 6.5334 0.8722 -0.6126 8 7 7.8663 0.5193 -0.3658 9 1 8.6494 0.9879 -0.6946 10 6 7.8719 -0.5864 0.4093 11 6 6.5888 -0.9349 0.6478 12 6 6.1265 -2.1131 1.4659 13 7 5.7514 -3.2147 0.5693 14 6 5.2952 -4.3833 1.3335 15 6 6.5045 -5.2218 1.7533 16 6 6.0277 -6.4207 2.5794 17 7 5.0214 -7.1589 1.8040 18 6 5.1614 -8.5025 1.5795 19 1 6.1462 -8.9445 1.5451 20 6 4.0375 -9.2962 1.3958 21 7 2.8525 -8.8532 1.7588 22 14 4.2070 -10.9933 0.6338 23 1 5.1014 -11.8272 1.4763 24 1 2.8697 -11.6333 0.5483 25 1 4.7846 -10.8687 -0.7285 26 6 3.8618 -6.4282 1.2746 27 6 4.3629 -5.2293 0.4633 28 6 3.5763 -1.2050 -0.0059 29 6 2.1961 -1.1993 -0.0001 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6530 2.1330 0.0004 34 1 4.1133 2.1423 -0.0010 35 1 8.7482 -1.1038 0.7711 36 1 6.9333 -2.4381 2.1229 37 1 5.2639 -1.8230 2.0658 38 1 6.5154 -3.4590 -0.0427 39 1 4.7590 -4.0495 2.2220 40 1 7.0271 -5.5768 0.8651 41 1 7.1795 -4.6118 2.3536 42 1 5.5854 -6.0694 3.5115 43 1 6.8717 -7.0746 2.7990 44 1 2.0672 -9.4080 1.6308 45 1 3.2427 -6.0776 2.1005 46 1 3.2757 -7.0851 0.6319 47 1 3.5135 -4.6246 0.1454 48 1 4.9056 -5.5843 -0.4128 49 1 4.1135 -2.1419 -0.0108 50 1 1.6532 -2.1329 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:47 Heat of formation + Delta-G solvation = 114.798794 kcal Electronic energy + Delta-G solvation = -29453.142011 eV Core-core repulsion = 25674.759472 eV Total energy + Delta-G solvation = -3778.382539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37022 -39.00578 -38.09736 -35.31889 -33.63266 -32.50385 -30.98189 -30.88007 -30.62688 -29.84195 -28.68674 -26.89567 -25.35889 -23.86380 -22.74933 -22.24826 -22.02496 -21.29739 -20.55886 -19.76261 -19.19083 -17.91328 -16.73657 -16.11301 -15.36640 -15.22813 -15.09185 -14.76784 -14.62085 -14.36678 -13.97311 -13.74351 -13.62596 -13.55661 -13.41829 -13.18745 -12.91706 -12.86965 -12.48708 -12.25977 -12.08322 -12.01192 -11.92279 -11.35910 -11.16769 -11.05376 -10.99822 -10.74655 -10.69356 -10.57989 -10.22238 -10.20064 -9.95832 -9.88888 -9.69388 -9.46692 -8.80920 -8.75877 -8.45451 -8.21229 -8.00160 -6.63688 -5.76020 -3.18339 1.07267 1.56142 1.82615 2.68797 2.72211 3.39911 3.45867 3.47071 3.92002 4.39368 4.51857 4.54995 4.74226 4.89794 4.96419 5.11124 5.13095 5.23176 5.34072 5.38796 5.45105 5.51513 5.54888 5.56000 5.64387 5.68346 5.75144 5.80342 5.90626 5.92616 6.01118 6.11342 6.15913 6.23626 6.33973 6.35399 6.51405 6.60142 6.63582 6.64457 6.72744 6.73393 6.77227 6.87849 6.97374 7.10435 7.14443 7.36048 7.42205 7.52766 7.66637 7.73037 7.82310 8.48646 9.24839 9.88256 10.45095 11.32388 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.002926 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.998656 B = 9566.501482 C =11491.211521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.134 4.134 4 C -0.092 4.092 5 C -0.031 4.031 6 C 0.141 3.859 7 N -0.291 5.291 8 N -0.479 5.479 9 H 0.439 0.561 10 C 0.060 3.940 11 C -0.216 4.216 12 C 0.132 3.868 13 N -0.681 5.681 14 C 0.094 3.906 15 C -0.158 4.158 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.063 0.937 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.171 3.829 27 C -0.125 4.125 28 C -0.089 4.089 29 C -0.125 4.125 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.175 0.825 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.339 0.661 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.051 0.949 44 H 0.254 0.746 45 H 0.016 0.984 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.173 0.827 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 20.871 -2.693 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.152 4.152 4 C -0.112 4.112 5 C -0.033 4.033 6 C -0.025 4.025 7 N -0.115 5.115 8 N -0.186 5.186 9 H 0.282 0.718 10 C -0.087 4.087 11 C -0.227 4.227 12 C 0.002 3.998 13 N -0.311 5.311 14 C -0.015 4.015 15 C -0.199 4.199 16 C 0.022 3.978 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.045 3.955 27 C -0.165 4.165 28 C -0.109 4.109 29 C -0.143 4.143 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.192 0.808 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.189 0.811 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.911 22.048 -3.518 22.667 hybrid contribution 1.513 -1.578 0.304 2.207 sum 5.424 20.470 -3.214 21.419 Atomic orbital electron populations 1.20818 0.91452 1.02744 1.02238 1.20055 0.96001 0.93379 0.98639 1.20845 0.93784 0.97410 1.03168 1.21134 0.94010 0.97194 0.98815 1.17786 0.87595 0.93883 1.04003 1.20631 0.93219 0.92870 0.95746 1.77555 0.86618 1.23333 1.23948 1.46147 1.07199 1.23491 1.41788 0.71766 1.22336 0.99218 0.90759 0.96393 1.20081 0.91262 1.01948 1.09459 1.20182 0.99206 0.87727 0.92651 1.60683 1.41145 1.08044 1.21254 1.21567 0.95556 0.88416 0.95965 1.22671 0.97661 0.98817 1.00782 1.20807 0.92818 0.91817 0.92337 1.44055 1.23323 1.04973 1.59134 1.19122 0.92055 0.83459 1.43668 0.91927 1.25026 0.96039 0.97677 1.00796 1.70015 0.98242 1.37550 1.48818 0.86393 0.76679 0.84229 0.79595 1.20982 1.21626 1.21053 1.20790 0.88926 0.90418 0.95360 1.22191 0.97918 0.97519 0.98870 1.22292 0.94261 0.99780 0.94528 1.21099 0.94286 0.97515 1.01370 0.91247 0.91302 0.91804 0.86335 0.86298 0.80756 0.94542 0.90305 0.84342 0.91134 0.92295 0.93640 0.96657 0.93094 0.93599 0.96540 0.89472 0.92722 0.92861 0.81051 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.08 -0.92 5.88 -104.56 -0.62 -1.53 16 3 C -0.13 -1.50 9.68 -39.63 -0.38 -1.89 16 4 C -0.09 -1.14 9.75 -39.26 -0.38 -1.52 16 5 C -0.03 -0.42 5.80 -104.89 -0.61 -1.02 16 6 C 0.14 1.88 6.74 -82.78 -0.56 1.32 16 7 N -0.29 -3.78 12.70 33.43 0.42 -3.36 16 8 N -0.48 -4.48 7.35 30.42 0.22 -4.26 16 9 H 0.44 2.55 8.96 -182.62 -1.64 0.91 16 10 C 0.06 0.55 11.88 -17.26 -0.21 0.35 16 11 C -0.22 -2.53 5.58 -104.75 -0.59 -3.11 16 12 C 0.13 1.56 4.89 -4.97 -0.02 1.54 16 13 N -0.68 -8.88 3.80 -107.94 -0.41 -9.29 16 14 C 0.09 1.47 2.43 -67.68 -0.16 1.31 16 15 C -0.16 -2.57 5.33 -26.61 -0.14 -2.72 16 16 C 0.15 3.05 6.52 -3.70 -0.02 3.03 16 17 N -0.59 -14.57 2.99 -172.31 -0.52 -15.08 16 18 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 19 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 22 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 27 C -0.13 -2.31 5.69 -26.61 -0.15 -2.46 16 28 C -0.09 -1.22 8.77 -39.26 -0.34 -1.56 16 29 C -0.12 -1.58 9.68 -39.63 -0.38 -1.97 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.59 8.08 -51.92 -0.42 0.17 16 32 H 0.06 0.48 8.08 -51.93 -0.42 0.07 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.04 0.40 7.40 -51.93 -0.38 0.02 16 37 H 0.08 1.01 7.67 -51.93 -0.40 0.61 16 38 H 0.34 4.33 8.47 -39.30 -0.33 4.00 16 39 H 0.07 1.16 7.80 -51.93 -0.40 0.75 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.64 7.42 -51.93 -0.39 0.25 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.30 6.07 -51.93 -0.31 1.98 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.17 2.44 4.72 -52.49 -0.25 2.20 16 50 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -31.20 397.27 -12.30 -43.49 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -9.13 Total: 5.28 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -4.46 Total: -13.99 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.34 Total: -57.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.20 -12.30 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.293 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds