Wall clock time and date at job start Sat Apr 11 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38323 * 119.87657 * 2 1 4 4 C 1.38016 * 120.11933 * 180.02562 * 3 2 1 5 5 C 1.39325 * 119.88074 * 359.97438 * 4 3 2 6 6 C 1.48423 * 120.11967 * 179.97438 * 5 4 3 7 7 N 1.31619 * 126.03719 * 325.03414 * 6 5 4 8 8 N 1.40074 * 108.10305 * 179.97438 * 7 6 5 9 9 H 0.97001 * 125.92885 * 179.97438 * 8 7 6 10 10 C 1.35033 * 108.14425 * 359.97438 * 8 7 6 11 11 C 1.35086 * 107.97694 * 0.23181 * 10 8 7 12 12 C 1.50704 * 126.07912 * 179.77761 * 11 10 8 13 13 N 1.46903 * 109.46766 * 260.02603 * 12 11 10 14 14 C 1.46896 * 110.99831 * 179.97438 * 13 12 11 15 15 C 1.53034 * 109.46146 * 275.06722 * 14 13 12 16 16 C 1.53200 * 109.31453 * 178.61320 * 15 14 13 17 17 N 1.46932 * 108.77191 * 54.63587 * 16 15 14 18 18 C 1.36938 * 120.62858 * 126.41867 * 17 16 15 19 19 H 1.07995 * 119.99833 * 331.81183 * 18 17 16 20 20 C 1.38811 * 119.99580 * 151.82554 * 18 17 16 21 21 N 1.31616 * 120.00478 * 343.06463 * 20 18 17 22 22 Si 1.86802 * 119.99597 * 163.07757 * 20 18 17 23 23 H 1.48498 * 109.47404 * 59.99470 * 22 20 18 24 24 H 1.48508 * 109.46800 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47108 * 299.99095 * 22 20 18 26 26 C 1.46930 * 118.73589 * 306.38994 * 17 16 15 27 27 C 1.53042 * 109.46001 * 154.99713 * 14 13 12 28 28 C 1.39322 * 119.76000 * 0.28151 * 5 4 3 29 29 C 1.38026 * 119.87769 * 359.46675 * 28 5 4 30 30 H 1.09001 * 109.47149 * 90.00491 * 1 2 3 31 31 H 1.09009 * 109.46721 * 209.99423 * 1 2 3 32 32 H 1.08994 * 109.47378 * 329.99874 * 1 2 3 33 33 H 1.08000 * 119.93973 * 0.02562 * 3 2 1 34 34 H 1.08007 * 120.06211 * 179.97438 * 4 3 2 35 35 H 1.07998 * 126.01390 * 179.97438 * 10 8 7 36 36 H 1.09005 * 109.46971 * 20.01816 * 12 11 10 37 37 H 1.09000 * 109.47563 * 140.02153 * 12 11 10 38 38 H 1.00893 * 111.00188 * 56.04163 * 13 12 11 39 39 H 1.09004 * 109.46404 * 35.02616 * 14 13 12 40 40 H 1.08998 * 109.50084 * 298.56259 * 15 14 13 41 41 H 1.08997 * 109.49941 * 58.66163 * 15 14 13 42 42 H 1.08992 * 109.58583 * 294.84998 * 16 15 14 43 43 H 1.08997 * 109.70511 * 174.48762 * 16 15 14 44 44 H 0.96994 * 120.00254 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58752 * 293.81902 * 26 17 16 46 46 H 1.09002 * 109.69776 * 173.46763 * 26 17 16 47 47 H 1.09004 * 109.49730 * 301.33485 * 27 14 13 48 48 H 1.08992 * 109.49784 * 61.43897 * 27 14 13 49 49 H 1.07998 * 120.05934 * 179.70197 * 28 5 4 50 50 H 1.08002 * 119.94130 * 180.25825 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5762 1.2053 -0.0005 5 6 4.2754 0.0002 -0.0005 6 6 5.7596 0.0003 -0.0017 7 7 6.5334 0.8722 -0.6126 8 7 7.8663 0.5193 -0.3658 9 1 8.6494 0.9879 -0.6946 10 6 7.8719 -0.5864 0.4093 11 6 6.5888 -0.9349 0.6478 12 6 6.1265 -2.1131 1.4659 13 7 5.7514 -3.2147 0.5693 14 6 5.2952 -4.3833 1.3335 15 6 6.5045 -5.2218 1.7533 16 6 6.0277 -6.4207 2.5794 17 7 5.0214 -7.1589 1.8040 18 6 5.1614 -8.5025 1.5795 19 1 6.1462 -8.9445 1.5451 20 6 4.0375 -9.2962 1.3958 21 7 2.8525 -8.8532 1.7588 22 14 4.2070 -10.9933 0.6338 23 1 5.1014 -11.8272 1.4763 24 1 2.8697 -11.6333 0.5483 25 1 4.7846 -10.8687 -0.7285 26 6 3.8618 -6.4282 1.2746 27 6 4.3629 -5.2293 0.4633 28 6 3.5763 -1.2050 -0.0059 29 6 2.1961 -1.1993 -0.0001 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6530 2.1330 0.0004 34 1 4.1133 2.1423 -0.0010 35 1 8.7482 -1.1038 0.7711 36 1 6.9333 -2.4381 2.1229 37 1 5.2639 -1.8230 2.0658 38 1 6.5154 -3.4590 -0.0427 39 1 4.7590 -4.0495 2.2220 40 1 7.0271 -5.5768 0.8651 41 1 7.1795 -4.6118 2.3536 42 1 5.5854 -6.0694 3.5115 43 1 6.8717 -7.0746 2.7990 44 1 2.0672 -9.4080 1.6308 45 1 3.2427 -6.0776 2.1005 46 1 3.2757 -7.0851 0.6319 47 1 3.5135 -4.6246 0.1454 48 1 4.9056 -5.5843 -0.4128 49 1 4.1135 -2.1419 -0.0108 50 1 1.6532 -2.1329 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:46 Heat of formation + Delta-G solvation = 97.464230 kcal Electronic energy + Delta-G solvation = -29453.893694 eV Core-core repulsion = 25674.759472 eV Total energy + Delta-G solvation = -3779.134222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19355 -39.90838 -39.55699 -36.76839 -34.61150 -34.04261 -32.35857 -31.78446 -31.64183 -31.35594 -30.07046 -27.71592 -26.89632 -25.24854 -23.79497 -23.53793 -23.08212 -22.86027 -21.41551 -20.94370 -20.43854 -18.92236 -18.47481 -16.99760 -16.87863 -16.28996 -16.19491 -16.04585 -15.74421 -15.46366 -15.27268 -15.11253 -14.95812 -14.67793 -14.54076 -14.45571 -14.10372 -13.89984 -13.67974 -13.58224 -13.19406 -12.98800 -12.93830 -12.86029 -12.76438 -12.52774 -12.42856 -12.06422 -11.99303 -11.92806 -11.85053 -11.70817 -11.47141 -11.32282 -11.11380 -10.72597 -10.50152 -9.74925 -9.62696 -9.15298 -9.04473 -8.63322 -7.83927 -5.29038 0.15874 0.61619 1.05431 1.48012 1.50631 1.57176 1.80691 2.01616 2.53764 2.98549 3.29123 3.43934 3.63572 3.76550 3.93167 4.03717 4.08546 4.11738 4.23426 4.26192 4.31587 4.48396 4.48916 4.56285 4.62499 4.66060 4.76833 4.80863 4.84458 4.88766 4.95090 4.96713 5.02094 5.10398 5.12190 5.19803 5.24797 5.30557 5.34026 5.34861 5.42178 5.47788 5.57952 5.69423 5.69657 5.79054 5.80824 5.84017 6.21129 6.22778 6.43382 6.47410 6.61790 6.71751 7.19080 7.91304 8.42446 9.22034 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.002926 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.998656 B = 9566.501482 C =11491.211521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.102 4.102 5 C -0.045 4.045 6 C 0.123 3.877 7 N -0.323 5.323 8 N -0.466 5.466 9 H 0.454 0.546 10 C 0.084 3.916 11 C -0.241 4.241 12 C 0.141 3.859 13 N -0.676 5.676 14 C 0.109 3.891 15 C -0.143 4.143 16 C 0.143 3.857 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.279 1.279 26 C 0.179 3.821 27 C -0.110 4.110 28 C -0.103 4.103 29 C -0.140 4.140 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.216 0.784 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.344 0.656 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.011 0.989 43 H 0.050 0.950 44 H 0.249 0.751 45 H -0.006 1.006 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.164 0.836 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 22.299 -2.965 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.121 4.121 5 C -0.047 4.047 6 C -0.042 4.042 7 N -0.147 5.147 8 N -0.175 5.175 9 H 0.301 0.699 10 C -0.065 4.065 11 C -0.252 4.252 12 C 0.012 3.988 13 N -0.306 5.306 14 C 0.000 4.000 15 C -0.183 4.183 16 C 0.017 3.983 17 N -0.334 5.334 18 C -0.394 4.394 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.205 1.205 26 C 0.053 3.947 27 C -0.150 4.150 28 C -0.123 4.123 29 C -0.158 4.158 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.233 0.767 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.163 0.837 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.029 0.971 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.012 0.988 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.181 0.819 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.855 23.519 -3.800 24.533 hybrid contribution 0.977 -1.948 0.419 2.219 sum 6.832 21.571 -3.381 22.878 Atomic orbital electron populations 1.20859 0.89581 1.03575 1.03065 1.20353 0.97443 0.92959 0.97767 1.21148 0.93529 0.98383 1.02077 1.21302 0.94678 0.97110 0.98992 1.17971 0.88320 0.94129 1.04300 1.20758 0.93287 0.93690 0.96445 1.77483 0.88115 1.24133 1.24958 1.46197 1.06741 1.23470 1.41083 0.69895 1.22888 0.99563 0.89728 0.94326 1.20119 0.92160 1.02179 1.10775 1.20067 0.99164 0.87174 0.92385 1.60532 1.41851 1.07027 1.21231 1.21237 0.94776 0.88864 0.95153 1.22502 0.98126 0.97280 1.00394 1.20989 0.91693 0.93059 0.92524 1.44325 1.24235 1.04732 1.60134 1.19465 0.92140 0.84876 1.42940 0.91785 1.25773 0.95816 1.01264 1.01694 1.70174 0.98741 1.38758 1.50283 0.85387 0.76336 0.80153 0.78845 1.20168 1.22057 1.20506 1.20563 0.88445 0.91291 0.94378 1.21932 0.98853 0.96065 0.98125 1.22253 0.94673 0.99639 0.95705 1.21249 0.94274 0.98287 1.01999 0.90316 0.91278 0.90201 0.83879 0.85854 0.76708 0.92776 0.91766 0.83677 0.91755 0.92432 0.90237 0.97085 0.93150 0.94164 0.98816 0.93138 0.91845 0.93538 0.81920 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.01 71.24 0.71 -1.16 16 2 C -0.08 -1.88 5.88 -19.83 -0.12 -2.00 16 3 C -0.13 -2.86 9.68 22.24 0.22 -2.64 16 4 C -0.10 -2.48 9.75 22.48 0.22 -2.26 16 5 C -0.05 -1.22 5.80 -20.04 -0.12 -1.34 16 6 C 0.12 3.17 6.74 42.53 0.29 3.46 16 7 N -0.32 -7.98 12.70 -48.15 -0.61 -8.59 16 8 N -0.47 -7.48 7.35 -57.68 -0.42 -7.91 16 9 H 0.45 3.95 8.96 -213.34 -1.91 2.04 16 10 C 0.08 1.24 11.88 83.47 0.99 2.23 16 11 C -0.24 -5.13 5.58 -19.95 -0.11 -5.24 16 12 C 0.14 3.05 4.89 85.56 0.42 3.46 16 13 N -0.68 -16.49 3.80 -495.43 -1.88 -18.37 16 14 C 0.11 3.30 2.43 44.94 0.11 3.41 16 15 C -0.14 -4.32 5.33 30.67 0.16 -4.15 16 16 C 0.14 5.76 6.52 86.36 0.56 6.33 16 17 N -0.61 -30.52 2.99 -699.07 -2.09 -32.61 16 18 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16 19 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 20 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 21 N -0.93 -55.58 11.19 21.65 0.24 -55.34 16 22 Si 0.96 45.07 29.59 68.60 2.03 47.10 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 C 0.18 8.66 5.30 86.36 0.46 9.11 16 27 C -0.11 -4.09 5.69 30.67 0.17 -3.92 16 28 C -0.10 -2.86 8.77 22.48 0.20 -2.66 16 29 C -0.14 -3.60 9.68 22.24 0.22 -3.39 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.13 8.08 -2.38 -0.02 1.11 16 32 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 33 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.05 0.98 7.40 -2.38 -0.02 0.97 16 37 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 38 H 0.34 7.93 8.47 -89.70 -0.76 7.17 16 39 H 0.06 2.06 7.80 -2.38 -0.02 2.04 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 1.92 7.42 -2.39 -0.02 1.90 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 45 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.05 2.79 6.07 -2.39 -0.01 2.78 16 47 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.16 4.68 4.72 -2.91 -0.01 4.67 16 50 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -69.93 397.27 1.15 -68.79 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -1.71 Total: 23.85 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 5.60 Total: -16.91 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -4.77 Total: -122.82 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.93 1.15 -68.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.250 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds