Wall clock time and date at job start Sat Apr 11 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00162 * 2 1 4 4 H 1.48502 * 109.46963 * 270.00238 * 3 2 1 5 5 H 1.48496 * 109.46947 * 29.99858 * 3 2 1 6 6 H 1.48503 * 109.47277 * 150.00400 * 3 2 1 7 7 C 1.37879 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99656 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00356 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47021 * 179.97438 * 9 7 2 11 11 C 1.46962 * 110.99879 * 170.00409 * 10 9 7 12 12 C 1.53046 * 109.36655 * 183.19173 * 11 10 9 13 13 N 1.46959 * 109.36379 * 301.59448 * 12 11 10 14 14 C 1.46898 * 111.00393 * 183.18716 * 13 12 11 15 15 C 1.50697 * 109.47054 * 169.99857 * 14 13 12 16 16 C 1.34665 * 126.59050 * 94.69422 * 15 14 13 17 17 N 1.34129 * 108.02445 * 180.25875 * 16 15 14 18 18 C 1.30498 * 109.25189 * 359.97438 * 17 16 15 19 19 N 1.35038 * 108.70342 * 359.97438 * 18 17 16 20 20 C 1.46500 * 126.40183 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47204 * 264.99993 * 20 19 18 22 22 C 1.38234 * 119.99846 * 269.72605 * 21 20 19 23 23 C 1.38232 * 119.99630 * 179.76721 * 22 21 20 24 24 C 1.38234 * 120.00238 * 0.50190 * 23 22 21 25 25 C 1.38242 * 120.00006 * 359.75094 * 24 23 22 26 26 C 1.38229 * 119.99841 * 89.99676 * 21 20 19 27 27 C 1.46957 * 110.87883 * 59.31892 * 13 12 11 28 28 C 1.46959 * 111.00393 * 293.80016 * 10 9 7 29 29 H 0.96992 * 119.99791 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46778 * 59.99949 * 9 7 2 31 31 H 1.08993 * 109.47227 * 299.99830 * 9 7 2 32 32 H 1.08997 * 109.48910 * 63.21665 * 11 10 9 33 33 H 1.09009 * 109.48366 * 303.15324 * 11 10 9 34 34 H 1.09004 * 109.49106 * 181.62938 * 12 11 10 35 35 H 1.08999 * 109.49516 * 61.56046 * 12 11 10 36 36 H 1.09004 * 109.46952 * 50.00254 * 14 13 12 37 37 H 1.08998 * 109.47180 * 290.00199 * 14 13 12 38 38 H 1.08008 * 125.98738 * 0.25295 * 16 15 14 39 39 H 1.08005 * 125.64628 * 180.02562 * 18 17 16 40 40 H 1.09002 * 109.46974 * 24.99738 * 20 19 18 41 41 H 1.09003 * 109.47341 * 144.99613 * 20 19 18 42 42 H 1.07996 * 120.00066 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99906 * 180.22621 * 23 22 21 44 44 H 1.07998 * 120.00320 * 179.72763 * 24 23 22 45 45 H 1.07996 * 119.99776 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00503 * 0.02562 * 26 21 20 47 47 H 1.09003 * 109.49097 * 60.64753 * 27 13 12 48 48 H 1.09004 * 109.49009 * 180.71296 * 27 13 12 49 49 H 1.09008 * 109.48595 * 296.78284 * 28 10 9 50 50 H 1.08992 * 109.48619 * 56.84072 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0010 11 6 5.4505 -2.6253 -0.2397 12 6 5.9068 -4.0844 -0.3113 13 7 5.5609 -4.7653 0.9443 14 6 6.0504 -6.1503 0.9444 15 6 5.8989 -6.7365 2.3244 16 6 4.8658 -7.4740 2.7742 17 7 5.1114 -7.7958 4.0530 18 6 6.2578 -7.2863 4.4124 19 7 6.7828 -6.6181 3.3629 20 6 8.0594 -5.8998 3.3401 21 6 7.8208 -4.4418 3.6372 22 6 7.5752 -3.5571 2.6038 23 6 7.3516 -2.2205 2.8768 24 6 7.3838 -1.7668 4.1821 25 6 7.6346 -2.6506 5.2151 26 6 7.8531 -3.9881 4.9425 27 6 4.1116 -4.7191 1.1830 28 6 3.6552 -3.2600 1.2546 29 1 -0.4849 0.8400 -0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6801 -0.8911 32 1 5.9696 -2.1215 0.5756 33 1 5.6801 -2.1259 -1.1811 34 1 6.9861 -4.1212 -0.4594 35 1 5.4081 -4.5811 -1.1436 36 1 7.1019 -6.1640 0.6573 37 1 5.4720 -6.7402 0.2334 38 1 3.9924 -7.7566 2.2051 39 1 6.7119 -7.3836 5.3875 40 1 8.7260 -6.3197 4.0934 41 1 8.5153 -6.0001 2.3551 42 1 7.5547 -3.9107 1.5836 43 1 7.1560 -1.5300 2.0698 44 1 7.2135 -0.7218 4.3950 45 1 7.6602 -2.2960 6.2349 46 1 8.0497 -4.6785 5.7495 47 1 3.5924 -5.2228 0.3677 48 1 3.8819 -5.2184 2.1244 49 1 4.1540 -2.7633 2.0869 50 1 2.5760 -3.2232 1.4027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614991842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:54 Heat of formation + Delta-G solvation = 115.001684 kcal Electronic energy + Delta-G solvation = -30852.735869 eV Core-core repulsion = 27074.362128 eV Total energy + Delta-G solvation = -3778.373741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19878 -39.26198 -38.76897 -35.42339 -34.66169 -32.54012 -31.20437 -31.03375 -30.72234 -30.25678 -28.33195 -26.47697 -26.02305 -23.65083 -23.22176 -22.63668 -21.83901 -21.30616 -21.05098 -19.73308 -19.27366 -17.33582 -16.90949 -16.77854 -16.05405 -15.76345 -15.32860 -14.93836 -14.69432 -14.47897 -14.44018 -14.42910 -14.00943 -13.67834 -13.50557 -13.30880 -13.30771 -13.15656 -12.84648 -12.57257 -12.44459 -12.24998 -12.11473 -11.91630 -11.48012 -11.35327 -11.09628 -10.93480 -10.77472 -10.62138 -10.42563 -10.10998 -9.92709 -9.83975 -9.61430 -9.27364 -8.93551 -8.89181 -8.57620 -8.44569 -8.13541 -7.36162 -6.05566 -4.02851 1.15002 1.41777 1.98438 2.78937 3.15978 3.26849 3.34578 3.35759 3.80950 4.08118 4.33580 4.40989 4.49593 4.59829 4.67496 4.74682 4.85132 4.90578 5.01178 5.06314 5.15484 5.21022 5.26354 5.27866 5.43416 5.46833 5.47599 5.55004 5.61124 5.73491 5.78447 5.87453 5.88978 5.99308 6.02944 6.09174 6.24071 6.31396 6.39545 6.50882 6.51209 6.56060 6.66417 6.72255 6.82920 6.94498 6.95973 7.08515 7.15311 7.21602 7.59023 7.90068 8.04427 8.07295 8.65411 9.02944 9.56156 11.07629 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003740 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.995980 B = 7484.027196 C = 8512.814606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.527 5.527 11 C 0.053 3.947 12 C 0.058 3.942 13 N -0.531 5.531 14 C 0.126 3.874 15 C -0.004 4.004 16 C -0.023 4.023 17 N -0.493 5.493 18 C 0.178 3.822 19 N -0.441 5.441 20 C 0.153 3.847 21 C -0.125 4.125 22 C -0.058 4.058 23 C -0.119 4.119 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.102 4.102 27 C 0.060 3.940 28 C 0.071 3.929 29 H 0.263 0.737 30 H -0.013 1.013 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.165 0.835 39 H 0.199 0.801 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.027 0.973 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.428 -11.412 6.826 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.038 3.962 10 N -0.251 5.251 11 C -0.076 4.076 12 C -0.069 4.069 13 N -0.256 5.256 14 C -0.002 4.002 15 C -0.119 4.119 16 C -0.172 4.172 17 N -0.211 5.211 18 C -0.104 4.104 19 N -0.124 5.124 20 C 0.031 3.969 21 C -0.125 4.125 22 C -0.076 4.076 23 C -0.137 4.137 24 C -0.125 4.125 25 C -0.149 4.149 26 C -0.120 4.120 27 C -0.068 4.068 28 C -0.057 4.057 29 H 0.073 0.927 30 H 0.005 0.995 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.182 0.818 39 H 0.216 0.784 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.151 0.849 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.133 0.867 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.045 0.955 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.881 -11.696 7.313 25.026 hybrid contribution 0.765 1.623 -0.388 1.835 sum 21.646 -10.073 6.926 24.859 Atomic orbital electron populations 1.69893 1.06116 1.26805 1.51090 1.24894 0.94708 0.98791 0.94877 0.86878 0.80296 0.84149 0.78521 1.20187 1.21227 1.19345 1.21023 0.88736 0.94678 1.50242 0.90194 1.20125 0.97064 0.84113 0.94888 1.62112 1.10093 1.19000 1.33936 1.22153 0.90576 0.94531 1.00359 1.22171 0.99166 0.95320 0.90290 1.62309 1.15790 1.13255 1.34241 1.20373 1.00590 0.89422 0.89859 1.21001 0.93487 1.05465 0.91955 1.22039 0.99422 1.03244 0.92492 1.70268 1.13941 1.23896 1.13000 1.24801 0.93088 0.98456 0.94026 1.45395 1.17193 1.39026 1.10790 1.20622 0.83204 0.88963 1.04119 1.19762 1.04524 0.94206 0.94051 1.21181 0.94409 0.92603 0.99427 1.21184 0.99746 0.96124 0.96664 1.21236 0.98420 0.99743 0.93126 1.21030 1.01383 0.93478 0.99024 1.20913 0.99814 0.95808 0.95514 1.22248 0.85757 0.98040 1.00711 1.21973 1.01650 0.91681 0.90414 0.92678 0.99486 0.95972 0.94970 0.91130 0.91354 0.93810 0.90686 0.92317 0.81795 0.78450 0.88501 0.88796 0.84948 0.86163 0.86333 0.86346 0.86658 0.94084 0.90676 0.95497 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.51 -14.34 9.03 -34.44 -0.31 -14.65 16 8 H 0.08 2.46 7.38 -52.48 -0.39 2.08 16 9 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 10 N -0.53 -10.62 4.70 -235.91 -1.11 -11.73 16 11 C 0.05 0.83 5.61 -3.77 -0.02 0.81 16 12 C 0.06 0.73 4.82 -3.77 -0.02 0.71 16 13 N -0.53 -6.64 2.42 -235.91 -0.57 -7.21 16 14 C 0.13 1.32 5.02 -4.98 -0.02 1.29 16 15 C 0.00 -0.04 5.71 -81.60 -0.47 -0.51 16 16 C -0.02 -0.31 10.68 -17.81 -0.19 -0.50 16 17 N -0.49 -6.93 11.25 -14.66 -0.16 -7.09 16 18 C 0.18 1.97 12.56 -90.38 -1.13 0.84 16 19 N -0.44 -4.54 2.73 -115.27 -0.32 -4.85 16 20 C 0.15 1.19 6.06 -5.19 -0.03 1.15 16 21 C -0.12 -1.23 5.46 -104.63 -0.57 -1.81 16 22 C -0.06 -0.65 8.60 -39.58 -0.34 -0.99 16 23 C -0.12 -1.46 9.67 -39.58 -0.38 -1.84 16 24 C -0.11 -1.25 10.05 -39.58 -0.40 -1.64 16 25 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 27 C 0.06 0.93 5.41 -3.77 -0.02 0.91 16 28 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H -0.01 -0.31 7.18 -51.93 -0.37 -0.68 16 31 H 0.02 0.53 7.45 -51.93 -0.39 0.14 16 32 H 0.03 0.51 6.36 -51.93 -0.33 0.18 16 33 H 0.07 1.08 8.07 -51.92 -0.42 0.66 16 34 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.65 7.36 -51.93 -0.38 0.27 16 37 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 39 H 0.20 1.49 8.06 -52.48 -0.42 1.06 16 40 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.09 0.63 7.40 -51.93 -0.38 0.24 16 42 H 0.13 1.43 5.07 -52.49 -0.27 1.17 16 43 H 0.12 1.50 6.72 -52.49 -0.35 1.15 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.07 1.19 6.38 -51.93 -0.33 0.86 16 49 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 50 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -32.83 389.31 -12.77 -45.59 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.75 Total: 1.70 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.83 Total: -12.23 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -1.39 Total: -57.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.83 -12.77 -45.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614991842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.593 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds