Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00162 * 2 1 4 4 H 1.48502 * 109.46963 * 270.00238 * 3 2 1 5 5 H 1.48496 * 109.46947 * 29.99858 * 3 2 1 6 6 H 1.48503 * 109.47277 * 150.00400 * 3 2 1 7 7 C 1.37879 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99656 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00356 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47021 * 179.97438 * 9 7 2 11 11 C 1.46962 * 110.99879 * 170.00409 * 10 9 7 12 12 C 1.53046 * 109.36655 * 183.19173 * 11 10 9 13 13 N 1.46959 * 109.36379 * 301.59448 * 12 11 10 14 14 C 1.46898 * 111.00393 * 183.18716 * 13 12 11 15 15 C 1.50697 * 109.47054 * 169.99857 * 14 13 12 16 16 C 1.34665 * 126.59050 * 94.69422 * 15 14 13 17 17 N 1.34129 * 108.02445 * 180.25875 * 16 15 14 18 18 C 1.30498 * 109.25189 * 359.97438 * 17 16 15 19 19 N 1.35038 * 108.70342 * 359.97438 * 18 17 16 20 20 C 1.46500 * 126.40183 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47204 * 264.99993 * 20 19 18 22 22 C 1.38234 * 119.99846 * 269.72605 * 21 20 19 23 23 C 1.38232 * 119.99630 * 179.76721 * 22 21 20 24 24 C 1.38234 * 120.00238 * 0.50190 * 23 22 21 25 25 C 1.38242 * 120.00006 * 359.75094 * 24 23 22 26 26 C 1.38229 * 119.99841 * 89.99676 * 21 20 19 27 27 C 1.46957 * 110.87883 * 59.31892 * 13 12 11 28 28 C 1.46959 * 111.00393 * 293.80016 * 10 9 7 29 29 H 0.96992 * 119.99791 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46778 * 59.99949 * 9 7 2 31 31 H 1.08993 * 109.47227 * 299.99830 * 9 7 2 32 32 H 1.08997 * 109.48910 * 63.21665 * 11 10 9 33 33 H 1.09009 * 109.48366 * 303.15324 * 11 10 9 34 34 H 1.09004 * 109.49106 * 181.62938 * 12 11 10 35 35 H 1.08999 * 109.49516 * 61.56046 * 12 11 10 36 36 H 1.09004 * 109.46952 * 50.00254 * 14 13 12 37 37 H 1.08998 * 109.47180 * 290.00199 * 14 13 12 38 38 H 1.08008 * 125.98738 * 0.25295 * 16 15 14 39 39 H 1.08005 * 125.64628 * 180.02562 * 18 17 16 40 40 H 1.09002 * 109.46974 * 24.99738 * 20 19 18 41 41 H 1.09003 * 109.47341 * 144.99613 * 20 19 18 42 42 H 1.07996 * 120.00066 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99906 * 180.22621 * 23 22 21 44 44 H 1.07998 * 120.00320 * 179.72763 * 24 23 22 45 45 H 1.07996 * 119.99776 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00503 * 0.02562 * 26 21 20 47 47 H 1.09003 * 109.49097 * 60.64753 * 27 13 12 48 48 H 1.09004 * 109.49009 * 180.71296 * 27 13 12 49 49 H 1.09008 * 109.48595 * 296.78284 * 28 10 9 50 50 H 1.08992 * 109.48619 * 56.84072 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0010 11 6 5.4505 -2.6253 -0.2397 12 6 5.9068 -4.0844 -0.3113 13 7 5.5609 -4.7653 0.9443 14 6 6.0504 -6.1503 0.9444 15 6 5.8989 -6.7365 2.3244 16 6 4.8658 -7.4740 2.7742 17 7 5.1114 -7.7958 4.0530 18 6 6.2578 -7.2863 4.4124 19 7 6.7828 -6.6181 3.3629 20 6 8.0594 -5.8998 3.3401 21 6 7.8208 -4.4418 3.6372 22 6 7.5752 -3.5571 2.6038 23 6 7.3516 -2.2205 2.8768 24 6 7.3838 -1.7668 4.1821 25 6 7.6346 -2.6506 5.2151 26 6 7.8531 -3.9881 4.9425 27 6 4.1116 -4.7191 1.1830 28 6 3.6552 -3.2600 1.2546 29 1 -0.4849 0.8400 -0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6801 -0.8911 32 1 5.9696 -2.1215 0.5756 33 1 5.6801 -2.1259 -1.1811 34 1 6.9861 -4.1212 -0.4594 35 1 5.4081 -4.5811 -1.1436 36 1 7.1019 -6.1640 0.6573 37 1 5.4720 -6.7402 0.2334 38 1 3.9924 -7.7566 2.2051 39 1 6.7119 -7.3836 5.3875 40 1 8.7260 -6.3197 4.0934 41 1 8.5153 -6.0001 2.3551 42 1 7.5547 -3.9107 1.5836 43 1 7.1560 -1.5300 2.0698 44 1 7.2135 -0.7218 4.3950 45 1 7.6602 -2.2960 6.2349 46 1 8.0497 -4.6785 5.7495 47 1 3.5924 -5.2228 0.3677 48 1 3.8819 -5.2184 2.1244 49 1 4.1540 -2.7633 2.0869 50 1 2.5760 -3.2232 1.4027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614991842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = 96.092778 kcal Electronic energy + Delta-G solvation = -30853.555820 eV Core-core repulsion = 27074.362128 eV Total energy + Delta-G solvation = -3779.193692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.03625 -40.21989 -39.87823 -36.83480 -35.45447 -34.60184 -32.25923 -31.97465 -31.65772 -31.45964 -29.90963 -27.40527 -27.18371 -25.01657 -24.45636 -23.46854 -22.88250 -22.63477 -22.12799 -20.63419 -20.54235 -18.96323 -18.15591 -17.65584 -17.22035 -16.71614 -16.34067 -16.13484 -15.89006 -15.87065 -15.67679 -15.41641 -15.17284 -15.08801 -14.84821 -14.43674 -14.28827 -14.13225 -13.95536 -13.73849 -13.59355 -13.33375 -13.19032 -13.02790 -12.92595 -12.73218 -12.30714 -12.20513 -12.13572 -12.03119 -11.85237 -11.72636 -11.55295 -11.33248 -10.83032 -10.79382 -10.45982 -9.74528 -9.69856 -9.39154 -9.16029 -8.97223 -8.29743 -6.33114 0.35881 0.62122 1.13480 1.31969 1.33927 1.44265 2.04766 2.25133 2.32415 3.01034 3.02949 3.04152 3.23139 3.74790 3.78591 3.82318 3.96200 4.00099 4.13713 4.16673 4.21486 4.24854 4.30547 4.32855 4.37582 4.47804 4.55412 4.60169 4.63414 4.68637 4.71119 4.77050 4.80922 4.90221 4.91324 4.99287 5.02804 5.11046 5.12052 5.20205 5.24623 5.46261 5.52204 5.60357 5.70457 5.73795 5.84408 5.92116 6.01719 6.11520 6.17320 6.36056 6.40598 6.66795 6.73258 7.21405 7.30566 8.87132 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003740 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.995980 B = 7484.027196 C = 8512.814606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.516 4.516 8 H 0.034 0.966 9 C 0.176 3.824 10 N -0.539 5.539 11 C 0.049 3.951 12 C 0.066 3.934 13 N -0.526 5.526 14 C 0.130 3.870 15 C -0.003 4.003 16 C -0.051 4.051 17 N -0.537 5.537 18 C 0.183 3.817 19 N -0.437 5.437 20 C 0.151 3.849 21 C -0.126 4.126 22 C -0.064 4.064 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.104 4.104 27 C 0.079 3.921 28 C 0.081 3.919 29 H 0.266 0.734 30 H -0.019 1.019 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.041 0.959 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.158 0.842 39 H 0.232 0.768 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.133 0.867 46 H 0.142 0.858 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.014 0.986 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.506 -11.929 7.053 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.554 4.554 8 H 0.053 0.947 9 C 0.049 3.951 10 N -0.264 5.264 11 C -0.079 4.079 12 C -0.062 4.062 13 N -0.251 5.251 14 C 0.002 3.998 15 C -0.119 4.119 16 C -0.199 4.199 17 N -0.255 5.255 18 C -0.100 4.100 19 N -0.119 5.119 20 C 0.030 3.970 21 C -0.126 4.126 22 C -0.082 4.082 23 C -0.159 4.159 24 C -0.145 4.145 25 C -0.159 4.159 26 C -0.122 4.122 27 C -0.049 4.049 28 C -0.047 4.047 29 H 0.075 0.925 30 H -0.001 1.001 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.176 0.824 39 H 0.248 0.752 40 H 0.148 0.852 41 H 0.130 0.870 42 H 0.156 0.844 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.151 0.849 46 H 0.160 0.840 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.032 0.968 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 24.997 -12.233 7.527 28.830 hybrid contribution -0.531 1.701 -0.400 1.826 sum 24.466 -10.532 7.128 27.574 Atomic orbital electron populations 1.70056 1.08166 1.28078 1.52658 1.25850 0.95578 1.03133 0.94360 0.85713 0.79220 0.78621 0.79369 1.18636 1.20857 1.17719 1.21260 0.91229 0.93111 1.49798 0.94723 1.19862 0.94079 0.86539 0.94670 1.62021 1.13536 1.16713 1.34140 1.22316 0.87336 0.97395 1.00844 1.22176 1.01464 0.92707 0.89850 1.62255 1.13161 1.15094 1.34561 1.20456 1.02335 0.87618 0.89429 1.21062 0.93295 1.04883 0.92678 1.22147 1.00231 1.04676 0.92828 1.70217 1.15926 1.25764 1.13613 1.25450 0.92217 0.97140 0.95149 1.45523 1.17694 1.38631 1.10037 1.20917 0.82334 0.87242 1.06492 1.20004 1.03588 0.95283 0.93764 1.21278 0.94541 0.92283 1.00141 1.21242 1.01154 0.96871 0.96671 1.21400 0.99296 1.00297 0.93550 1.21303 1.01138 0.93990 0.99485 1.21284 0.98679 0.95865 0.96404 1.21899 0.88047 0.94705 1.00264 1.21769 0.98974 0.94177 0.89808 0.92460 1.00113 0.95154 0.94560 0.90227 0.87179 0.94105 0.87468 0.91896 0.82429 0.75159 0.85172 0.86970 0.84444 0.87237 0.86332 0.84860 0.83975 0.94812 0.91174 0.96760 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 7 C -0.52 -30.38 9.03 25.60 0.23 -30.15 16 8 H 0.03 2.29 7.38 -2.91 -0.02 2.27 16 9 C 0.18 8.49 3.79 85.56 0.32 8.82 16 10 N -0.54 -22.03 4.70 -900.29 -4.23 -26.26 16 11 C 0.05 1.47 5.61 86.31 0.48 1.95 16 12 C 0.07 1.44 4.82 86.31 0.42 1.86 16 13 N -0.53 -12.06 2.42 -900.29 -2.18 -14.24 16 14 C 0.13 2.30 5.02 85.56 0.43 2.73 16 15 C 0.00 -0.06 5.71 40.95 0.23 0.17 16 16 C -0.05 -1.31 10.68 83.52 0.89 -0.42 16 17 N -0.54 -14.54 11.25 -200.31 -2.25 -16.80 16 18 C 0.18 3.54 12.56 180.26 2.26 5.80 16 19 N -0.44 -7.49 2.73 -518.61 -1.42 -8.90 16 20 C 0.15 1.63 6.06 85.63 0.52 2.15 16 21 C -0.13 -2.05 5.46 -19.87 -0.11 -2.16 16 22 C -0.06 -1.27 8.60 22.27 0.19 -1.08 16 23 C -0.14 -3.33 9.67 22.27 0.22 -3.12 16 24 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 25 C -0.14 -2.71 10.05 22.27 0.22 -2.49 16 26 C -0.10 -1.70 9.70 22.27 0.22 -1.48 16 27 C 0.08 2.48 5.41 86.31 0.47 2.94 16 28 C 0.08 3.27 5.43 86.31 0.47 3.74 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H -0.02 -0.93 7.18 -2.38 -0.02 -0.94 16 31 H 0.03 1.42 7.45 -2.39 -0.02 1.40 16 32 H 0.04 1.08 6.36 -2.39 -0.02 1.07 16 33 H 0.08 2.25 8.07 -2.38 -0.02 2.23 16 34 H 0.11 1.61 7.53 -2.38 -0.02 1.59 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.29 7.36 -2.38 -0.02 1.27 16 37 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 38 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.23 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.13 0.61 8.08 -2.39 -0.02 0.59 16 41 H 0.11 0.86 7.40 -2.39 -0.02 0.85 16 42 H 0.14 2.48 5.07 -2.91 -0.01 2.46 16 43 H 0.11 2.71 6.72 -2.91 -0.02 2.69 16 44 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 2.28 6.38 -2.38 -0.02 2.26 16 49 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.05 2.23 6.79 -2.39 -0.02 2.22 16 Total: -1.00 -76.07 389.31 1.12 -74.95 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.87 Total: 17.31 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 8.15 Total: -12.47 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -9.79 Total: -126.23 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -76.07 1.12 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614991842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.038 kcal (2) G-P(sol) polarization free energy of solvation -76.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds