Wall clock time and date at job start Sat Apr 11 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.47183 * 2 1 4 4 C 1.47443 * 110.99655 * 64.83926 * 3 2 1 5 5 C 1.54317 * 107.23256 * 236.74296 * 4 3 2 6 6 C 1.55137 * 103.02179 * 337.71813 * 5 4 3 7 7 C 1.47842 * 110.99739 * 304.00242 * 3 2 1 8 8 H 1.08994 * 110.37840 * 27.42044 * 7 3 2 9 9 C 1.53007 * 110.37085 * 265.18900 * 7 3 2 10 10 N 1.46500 * 109.46953 * 61.79790 * 9 7 3 11 11 C 1.34776 * 119.99854 * 186.12803 * 10 9 7 12 12 S 1.71197 * 120.00086 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99857 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00136 * 180.02562 * 13 11 10 15 15 C 1.53044 * 109.46262 * 275.02775 * 14 13 11 16 16 C 1.53185 * 109.31348 * 178.59857 * 15 14 13 17 17 N 1.46928 * 108.76795 * 54.65545 * 16 15 14 18 18 C 1.36938 * 120.62943 * 126.35780 * 17 16 15 19 19 H 1.08003 * 119.99913 * 211.17087 * 18 17 16 20 20 C 1.38807 * 120.00064 * 31.18021 * 18 17 16 21 21 N 1.31619 * 120.00404 * 9.98839 * 20 18 17 22 22 Si 1.86799 * 120.00007 * 189.99219 * 20 18 17 23 23 H 1.48498 * 109.47293 * 59.99570 * 22 20 18 24 24 H 1.48503 * 109.47417 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47030 * 299.99637 * 22 20 18 26 26 C 1.46929 * 118.73653 * 306.38324 * 17 16 15 27 27 C 1.53040 * 109.46253 * 154.96965 * 14 13 11 28 28 H 1.09000 * 109.46837 * 186.98756 * 1 2 3 29 29 H 1.09002 * 109.47197 * 306.98530 * 1 2 3 30 30 H 1.09000 * 109.47275 * 66.98645 * 1 2 3 31 31 H 1.09001 * 109.47476 * 240.00300 * 2 1 3 32 32 H 1.08999 * 109.47251 * 119.99959 * 2 1 3 33 33 H 1.08996 * 109.89586 * 356.15267 * 4 3 2 34 34 H 1.09001 * 109.88944 * 117.34264 * 4 3 2 35 35 H 1.09001 * 110.70323 * 96.10511 * 5 4 3 36 36 H 1.09005 * 110.70789 * 219.33571 * 5 4 3 37 37 H 1.08997 * 110.99029 * 277.56436 * 6 5 4 38 38 H 1.08998 * 110.99028 * 153.73912 * 6 5 4 39 39 H 1.08997 * 109.47133 * 181.79700 * 9 7 3 40 40 H 1.08998 * 109.47259 * 301.79981 * 9 7 3 41 41 H 0.97005 * 119.99961 * 6.12830 * 10 9 7 42 42 H 0.97005 * 119.99958 * 359.97438 * 13 11 10 43 43 H 1.09000 * 109.45841 * 34.99889 * 14 13 11 44 44 H 1.09000 * 109.49503 * 298.56422 * 15 14 13 45 45 H 1.09001 * 109.49608 * 58.66042 * 15 14 13 46 46 H 1.09000 * 109.59882 * 294.86608 * 16 15 14 47 47 H 1.09003 * 109.58417 * 174.43305 * 16 15 14 48 48 H 0.96991 * 120.00333 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.58251 * 293.82180 * 26 17 16 50 50 H 1.08997 * 109.58153 * 173.39659 * 26 17 16 51 51 H 1.09002 * 109.49871 * 301.33757 * 27 14 13 52 52 H 1.08999 * 109.49668 * 61.43939 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6440 2.0782 1.2459 5 6 0.8434 3.3354 0.8461 6 6 1.2963 3.5879 -0.6161 7 6 1.4685 2.1418 -1.1442 8 1 0.5057 1.7284 -1.4443 9 6 2.4473 2.1173 -2.3201 10 7 2.6474 0.7343 -2.7601 11 6 3.5661 0.4543 -3.7056 12 16 4.4987 1.7147 -4.3930 13 7 3.7498 -0.8179 -4.1108 14 6 4.7487 -1.1225 -5.1382 15 6 4.1313 -0.9243 -6.5244 16 6 5.1885 -1.2097 -7.5955 17 7 5.7417 -2.5517 -7.3679 18 6 5.7553 -3.4806 -8.3740 19 1 5.6694 -4.5314 -8.1399 20 6 5.8795 -3.0716 -9.6946 21 7 6.1803 -1.8203 -9.9706 22 14 5.6196 -4.2971 -11.0803 23 1 4.2423 -4.8469 -11.0030 24 1 5.8084 -3.6154 -12.3860 25 1 6.6021 -5.4034 -10.9535 26 6 6.2796 -2.8782 -6.0402 27 6 5.2102 -2.5737 -4.9864 28 1 -0.3633 -1.0201 0.1250 29 1 -0.3634 0.6183 0.8209 30 1 -0.3634 0.4018 -0.9459 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.0257 1.4252 1.8618 34 1 2.5406 2.3683 1.7937 35 1 -0.2280 3.1399 0.8895 36 1 1.1082 4.1797 1.4827 37 1 2.2420 4.1290 -0.6440 38 1 0.5273 4.1192 -1.1768 39 1 2.0413 2.7053 -3.1431 40 1 3.4017 2.5407 -2.0072 41 1 2.1188 0.0202 -2.3708 42 1 3.2211 -1.5321 -3.7215 43 1 5.6033 -0.4558 -5.0226 44 1 3.2920 -1.6084 -6.6499 45 1 3.7816 0.1034 -6.6233 46 1 5.9859 -0.4696 -7.5285 47 1 4.7291 -1.1665 -8.5830 48 1 6.2667 -1.5345 -10.8934 49 1 7.1660 -2.2741 -5.8464 50 1 6.5401 -3.9359 -6.0016 51 1 5.6285 -2.7203 -3.9906 52 1 4.3606 -3.2421 -5.1267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730437510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:05 Heat of formation + Delta-G solvation = 46.858429 kcal Electronic energy + Delta-G solvation = -28192.713825 eV Core-core repulsion = 24546.829122 eV Total energy + Delta-G solvation = -3645.884703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37801 -38.97080 -37.15484 -34.89386 -33.82213 -32.40595 -30.71386 -29.90803 -29.27858 -29.17817 -25.83266 -24.79296 -23.83358 -23.24289 -22.14658 -21.84176 -21.59616 -20.27311 -19.41404 -17.97910 -17.33993 -17.00064 -16.52724 -15.84447 -15.16507 -15.02808 -15.00287 -14.64281 -14.54504 -14.35588 -13.98408 -13.72891 -13.47143 -13.06477 -13.04298 -12.95263 -12.59324 -12.39670 -12.31994 -11.89959 -11.87582 -11.69609 -11.53648 -11.45094 -11.29547 -11.06770 -10.99457 -10.80586 -10.75401 -10.72590 -10.30100 -10.22274 -9.99298 -9.69458 -9.59313 -8.83062 -8.79611 -8.41233 -7.51206 -7.03867 -6.58750 -5.73160 -3.22324 1.68422 2.22069 2.79621 3.38322 3.40172 3.45520 3.46507 3.64536 4.09771 4.16550 4.39436 4.48329 4.51363 4.62185 4.68655 4.72865 4.84863 5.01187 5.18463 5.23644 5.26142 5.30014 5.34583 5.37549 5.43717 5.45168 5.49415 5.57527 5.63360 5.65132 5.74625 5.78662 5.82865 6.02883 6.11160 6.21449 6.34595 6.45081 6.48241 6.56385 6.63227 6.68122 6.79134 6.90716 6.98243 7.10304 7.43663 7.53506 7.79494 7.84823 8.52326 9.26603 9.87628 10.45759 11.34465 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.025154 B = 0.002213 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.863357 B =12651.320006 C =13085.459093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 N -0.521 5.521 4 C 0.040 3.960 5 C -0.141 4.141 6 C -0.118 4.118 7 C 0.048 3.952 8 H 0.069 0.931 9 C 0.144 3.856 10 N -0.690 5.690 11 C 0.562 3.438 12 S -0.646 6.646 13 N -0.677 5.677 14 C 0.149 3.851 15 C -0.143 4.143 16 C 0.177 3.823 17 N -0.593 5.593 18 C -0.256 4.256 19 H 0.063 0.937 20 C 0.005 3.995 21 N -0.901 5.901 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.150 3.850 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.389 0.611 42 H 0.388 0.612 43 H 0.111 0.889 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.026 0.974 47 H 0.092 0.908 48 H 0.255 0.745 49 H 0.023 0.977 50 H 0.058 0.942 51 H 0.054 0.946 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.592 6.221 24.587 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.086 4.086 3 N -0.245 5.245 4 C -0.087 4.087 5 C -0.179 4.179 6 C -0.157 4.157 7 C -0.061 4.061 8 H 0.087 0.913 9 C 0.020 3.980 10 N -0.323 5.323 11 C 0.202 3.798 12 S -0.521 6.521 13 N -0.304 5.304 14 C 0.047 3.953 15 C -0.184 4.184 16 C 0.051 3.949 17 N -0.316 5.316 18 C -0.386 4.386 19 H 0.081 0.919 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.023 3.977 27 C -0.180 4.180 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.227 0.773 42 H 0.224 0.776 43 H 0.128 0.872 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.041 0.959 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.302 7.172 23.847 28.233 hybrid contribution -2.124 -2.028 0.107 2.939 sum -15.426 5.144 23.954 28.952 Atomic orbital electron populations 1.22520 0.97806 1.02809 1.02362 1.22397 0.93044 0.90589 1.02607 1.63721 1.57104 1.01627 1.02014 1.22833 0.99197 0.94579 0.92111 1.22785 0.99816 0.98500 0.96840 1.22647 1.02802 0.94918 0.95326 1.23053 0.96675 0.94883 0.91494 0.91325 1.21664 1.00992 0.80524 0.94832 1.45140 1.37483 1.11242 1.38425 1.22268 0.85085 0.89761 0.82719 1.93476 1.53937 1.36593 1.68109 1.45598 1.39772 1.04629 1.40368 1.21609 0.90523 0.97277 0.85928 1.22558 1.00460 1.00895 0.94513 1.20778 0.92448 0.85303 0.96401 1.44090 1.68368 1.11943 1.07170 1.19097 1.44990 0.88706 0.85817 0.91941 1.25182 0.99667 0.96439 0.98106 1.69958 1.50801 1.15415 1.18320 0.86353 0.78066 0.80533 0.81618 1.21096 1.21575 1.20890 1.20818 0.92543 0.98671 0.85679 1.22397 1.01212 0.94474 0.99933 0.91713 0.92036 0.92156 0.91351 0.90122 0.92395 0.90206 0.91538 0.90383 0.89664 0.90271 0.89880 0.88535 0.77261 0.77647 0.87170 0.93427 0.91568 0.95612 0.89002 0.93434 0.95867 0.92334 0.92705 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.95 9.22 37.16 0.34 -0.61 16 2 C 0.04 0.25 5.68 -3.82 -0.02 0.23 16 3 N -0.52 -3.63 5.01 -223.38 -1.12 -4.75 16 4 C 0.04 0.23 6.25 -2.84 -0.02 0.21 16 5 C -0.14 -0.68 6.94 -24.91 -0.17 -0.85 16 6 C -0.12 -0.68 6.50 -24.59 -0.16 -0.84 16 7 C 0.05 0.32 2.43 -66.18 -0.16 0.16 16 8 H 0.07 0.44 5.41 -51.93 -0.28 0.16 16 9 C 0.14 1.39 4.89 -4.04 -0.02 1.37 16 10 N -0.69 -7.12 5.36 -62.03 -0.33 -7.45 16 11 C 0.56 8.06 7.95 -86.92 -0.69 7.37 16 12 S -0.65 -12.41 26.53 -107.50 -2.85 -15.26 16 13 N -0.68 -9.18 5.08 -55.48 -0.28 -9.46 16 14 C 0.15 2.58 2.18 -67.89 -0.15 2.43 16 15 C -0.14 -2.88 5.60 -26.61 -0.15 -3.03 16 16 C 0.18 4.36 5.26 -3.71 -0.02 4.34 16 17 N -0.59 -14.86 2.99 -172.32 -0.51 -15.37 16 18 C -0.26 -7.01 9.59 -15.06 -0.14 -7.15 16 19 H 0.06 1.66 7.85 -52.48 -0.41 1.25 16 20 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 21 N -0.90 -26.50 10.99 55.49 0.61 -25.89 16 22 Si 0.90 21.76 29.56 -169.99 -5.03 16.74 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 27 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.29 6.48 -51.93 -0.34 -0.04 16 30 H 0.06 0.31 6.18 -51.93 -0.32 -0.01 16 31 H 0.07 0.41 5.37 -51.93 -0.28 0.13 16 32 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.06 0.29 6.38 -51.93 -0.33 -0.04 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.14 7.74 -51.93 -0.40 0.74 16 41 H 0.39 3.09 5.50 -40.82 -0.22 2.86 16 42 H 0.39 4.06 8.62 -40.82 -0.35 3.71 16 43 H 0.11 2.20 6.82 -51.93 -0.35 1.85 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.38 7.49 -51.93 -0.39 0.99 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 2.54 6.06 -51.93 -0.31 2.22 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -32.70 398.34 -14.17 -46.87 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -9.03 Total: 4.26 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.62 Total: 4.31 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -1.64 Total: -62.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: -12.41 SS G_CDS: -2.85 Total: -15.26 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.70 -14.17 -46.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730437510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.732 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds