Wall clock time and date at job start Sat Apr 11 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47563 * 2 1 4 4 N 1.46902 * 109.47190 * 239.99550 * 2 1 3 5 5 C 1.46904 * 110.99534 * 85.00360 * 4 2 1 6 6 C 1.53000 * 109.47085 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47253 * 305.00344 * 6 5 4 8 8 O 1.42900 * 109.47194 * 64.99751 * 6 5 4 9 9 C 1.52998 * 109.47107 * 184.99848 * 6 5 4 10 10 N 1.46899 * 109.46858 * 175.04575 * 9 6 5 11 11 C 1.46903 * 110.99991 * 163.94840 * 10 9 6 12 12 C 1.46902 * 111.00138 * 287.89426 * 10 9 6 13 13 C 1.50702 * 109.47206 * 170.00004 * 12 10 9 14 14 H 1.07990 * 119.99891 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99588 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00136 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.46844 * 90.00277 * 17 15 13 19 19 H 1.48497 * 109.47088 * 210.00471 * 17 15 13 20 20 H 1.48503 * 109.46723 * 330.00198 * 17 15 13 21 21 C 1.53007 * 109.47101 * 120.00139 * 2 1 3 22 22 H 1.08999 * 109.46878 * 175.00207 * 21 2 1 23 23 O 1.42902 * 109.46965 * 54.99680 * 21 2 1 24 24 C 1.50696 * 109.46975 * 294.99925 * 21 2 1 25 25 C 1.38272 * 119.98974 * 84.72693 * 24 21 2 26 26 C 1.38222 * 120.05243 * 179.72885 * 25 24 21 27 27 C 1.38225 * 120.02046 * 0.54320 * 26 25 24 28 28 C 1.38434 * 119.97996 * 359.72829 * 27 26 25 29 29 F 1.35098 * 120.02714 * 180.02562 * 28 27 26 30 30 C 1.38182 * 119.98797 * 265.00092 * 24 21 2 31 31 H 1.09000 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46861 * 300.00061 * 1 2 3 33 33 H 1.08997 * 109.46751 * 60.00058 * 1 2 3 34 34 H 1.00901 * 111.00190 * 321.05025 * 4 2 1 35 35 H 1.08996 * 109.47355 * 59.99871 * 5 4 2 36 36 H 1.09001 * 109.46826 * 299.99768 * 5 4 2 37 37 H 0.96698 * 114.00266 * 60.00042 * 8 6 5 38 38 H 1.08997 * 109.47560 * 55.04389 * 9 6 5 39 39 H 1.08998 * 109.46907 * 295.04026 * 9 6 5 40 40 H 1.08998 * 109.47439 * 189.27288 * 11 10 9 41 41 H 1.08994 * 109.47470 * 69.26701 * 11 10 9 42 42 H 1.09004 * 109.46549 * 309.26905 * 11 10 9 43 43 H 1.08997 * 109.47475 * 290.00611 * 12 10 9 44 44 H 1.09000 * 109.46537 * 50.00068 * 12 10 9 45 45 H 0.97003 * 119.99947 * 179.97438 * 16 15 13 46 46 H 0.96692 * 114.00224 * 299.99938 * 23 21 2 47 47 H 1.08000 * 119.97238 * 359.97438 * 25 24 21 48 48 H 1.07995 * 119.98637 * 180.27859 * 26 25 24 49 49 H 1.08003 * 120.00666 * 179.70491 * 27 26 25 50 50 H 1.08000 * 120.01076 * 0.02562 * 30 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5951 -0.5332 -3.5744 7 1 3.5507 -1.0022 -3.3396 8 8 1.6493 -1.5387 -3.9440 9 6 2.7790 0.4456 -4.7359 10 7 3.3822 -0.2562 -5.8767 11 6 3.2294 0.5214 -7.1137 12 6 4.7956 -0.5625 -5.6189 13 6 5.3126 -1.4878 -6.6902 14 1 4.6570 -1.8152 -7.4834 15 6 6.6230 -1.9155 -6.6581 16 7 7.4215 -1.5164 -5.6923 17 14 7.2641 -3.0619 -7.9864 18 1 7.8137 -2.2602 -9.1090 19 1 8.3344 -3.9232 -7.4226 20 1 6.1537 -3.9136 -8.4833 21 6 2.0400 -0.7213 1.2493 22 1 3.1263 -0.7995 1.2056 23 8 1.4702 -2.0304 1.3094 24 6 1.6414 0.0570 2.4766 25 6 0.3903 -0.1275 3.0358 26 6 0.0254 0.5815 4.1648 27 6 0.9068 1.4842 4.7295 28 6 2.1575 1.6740 4.1672 29 9 3.0199 2.5557 4.7186 30 6 2.5241 0.9589 3.0394 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.4496 -1.4980 -1.4100 35 1 2.7589 1.0461 -2.1182 36 1 1.0871 0.6162 -2.5525 37 1 0.7743 -1.1927 -4.1669 38 1 3.4320 1.2607 -4.4242 39 1 1.8094 0.8484 -5.0285 40 1 3.5339 -0.0870 -7.9653 41 1 3.8544 1.4129 -7.0620 42 1 2.1864 0.8152 -7.2316 43 1 5.3747 0.3608 -5.6258 44 1 4.8913 -1.0440 -4.6457 45 1 8.3433 -1.8177 -5.6695 46 1 0.5041 -2.0373 1.3504 47 1 -0.3007 -0.8291 2.5925 48 1 -0.9503 0.4333 4.6034 49 1 0.6196 2.0417 5.6088 50 1 3.4994 1.1065 2.5996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843099485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:24 Heat of formation + Delta-G solvation = -114.616683 kcal Electronic energy + Delta-G solvation = -29518.100343 eV Core-core repulsion = 25266.707627 eV Total energy + Delta-G solvation = -4251.392716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.24272 -40.34530 -38.44597 -37.55586 -35.80819 -34.86358 -32.45505 -32.29351 -31.15464 -30.49458 -28.69196 -27.26527 -26.99745 -25.30608 -23.49751 -23.17267 -22.35099 -21.52482 -20.78013 -19.98570 -18.31098 -17.18072 -16.75106 -16.63394 -16.48624 -16.08424 -15.94527 -15.78649 -15.19527 -15.09726 -14.92532 -14.67729 -14.27449 -14.19013 -14.00088 -13.59529 -13.40181 -13.33539 -12.86895 -12.73664 -12.58755 -12.37154 -12.24690 -12.01720 -11.92339 -11.85568 -11.62005 -11.36494 -11.24754 -11.14178 -10.91338 -10.68824 -10.63144 -10.45032 -10.31677 -9.71807 -9.60771 -9.38483 -9.11081 -9.08364 -8.42212 -8.37080 -7.18127 -5.96965 -3.97426 0.68521 0.75443 3.08707 3.36048 3.42250 3.47366 3.67629 3.90266 4.16352 4.32806 4.36266 4.48129 4.53802 4.59769 4.63959 4.73108 4.77371 4.90446 4.95073 4.99971 5.20891 5.31101 5.33146 5.37621 5.41330 5.44819 5.49622 5.60599 5.62043 5.68633 5.70866 5.77872 5.81027 5.84807 6.04911 6.07802 6.09011 6.36120 6.43561 6.55949 6.72312 6.92293 7.31619 7.32656 7.35058 7.38948 7.84495 8.07315 8.14676 8.24464 8.59888 9.09563 9.66234 11.14135 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.002014 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.036400 B =13902.552765 C =14463.571220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.058 3.942 3 H 0.086 0.914 4 N -0.670 5.670 5 C 0.030 3.970 6 C 0.114 3.886 7 H 0.115 0.885 8 O -0.541 6.541 9 C 0.027 3.973 10 N -0.532 5.532 11 C 0.041 3.959 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.157 3.843 22 H 0.121 0.879 23 O -0.542 6.542 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.088 4.088 27 C -0.157 4.157 28 C 0.101 3.899 29 F -0.139 7.139 30 C -0.143 4.143 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.354 0.646 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.358 0.642 38 H 0.031 0.969 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.011 0.989 42 H 0.041 0.959 43 H -0.012 1.012 44 H 0.033 0.967 45 H 0.261 0.739 46 H 0.366 0.634 47 H 0.128 0.872 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.669 7.486 19.836 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.052 4.052 3 H 0.104 0.896 4 N -0.302 5.302 5 C -0.100 4.100 6 C 0.054 3.946 7 H 0.133 0.867 8 O -0.344 6.344 9 C -0.103 4.103 10 N -0.256 5.256 11 C -0.108 4.108 12 C 0.067 3.933 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.198 1.198 21 C 0.097 3.903 22 H 0.138 0.862 23 O -0.348 6.348 24 C -0.082 4.082 25 C -0.142 4.142 26 C -0.107 4.107 27 C -0.176 4.176 28 C 0.082 3.918 29 F -0.117 7.117 30 C -0.162 4.162 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.174 0.826 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.202 0.798 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.006 0.994 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.215 0.785 47 H 0.146 0.854 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.876 6.553 20.088 27.042 hybrid contribution -0.875 1.277 -0.658 1.682 sum -17.751 7.830 19.431 27.458 Atomic orbital electron populations 1.22643 0.97298 1.02379 1.03073 1.22148 0.93033 0.98557 0.91498 0.89597 1.60306 1.57765 1.09492 1.02659 1.22736 0.99428 0.95965 0.91830 1.22031 0.93891 0.88998 0.89665 0.86739 1.86720 1.23153 1.34756 1.89760 1.22665 0.98844 0.95172 0.93583 1.62062 1.20723 1.42300 1.00509 1.22185 0.98079 0.95913 0.94582 1.19799 0.80432 0.95162 0.97921 1.21141 0.95252 1.27805 1.10059 0.91941 1.24987 0.96916 0.96672 0.96123 1.69956 1.06298 1.45354 1.32292 0.86504 0.78563 0.80777 0.81623 1.20867 1.21252 1.19758 1.20939 0.99623 0.81456 0.88304 0.86168 1.86732 1.24791 1.26761 1.96511 1.20501 0.93842 0.96372 0.97496 1.20984 0.96030 1.00468 0.96684 1.20982 0.99407 0.95005 0.95259 1.21178 0.93018 1.01364 1.02029 1.17697 0.88533 0.91247 0.94301 1.91518 1.69112 1.66355 1.84763 1.21039 1.01500 0.97761 0.95930 0.91965 0.91426 0.91983 0.82579 0.90425 0.95408 0.79760 0.95131 0.92347 0.90945 0.97028 0.94025 0.99412 0.94865 0.92980 0.78536 0.85442 0.84874 0.84759 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 8.06 37.16 0.30 -1.02 16 2 C 0.06 0.52 2.45 -67.71 -0.17 0.35 16 3 H 0.09 0.79 7.80 -51.93 -0.40 0.38 16 4 N -0.67 -7.79 6.20 -106.72 -0.66 -8.45 16 5 C 0.03 0.37 5.16 -3.82 -0.02 0.35 16 6 C 0.11 1.83 3.26 -26.73 -0.09 1.74 16 7 H 0.11 2.31 6.46 -51.93 -0.34 1.98 16 8 O -0.54 -8.73 12.80 -35.23 -0.45 -9.18 16 9 C 0.03 0.47 4.61 -3.83 -0.02 0.45 16 10 N -0.53 -11.55 4.66 -244.37 -1.14 -12.68 16 11 C 0.04 0.80 9.32 60.07 0.56 1.36 16 12 C 0.19 5.07 4.57 -4.97 -0.02 5.05 16 13 C -0.50 -14.50 8.58 -34.44 -0.30 -14.80 16 14 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.16 1.43 3.25 -27.88 -0.09 1.34 16 22 H 0.12 1.28 8.05 -51.93 -0.42 0.86 16 23 O -0.54 -5.25 12.98 -35.23 -0.46 -5.71 16 24 C -0.08 -0.65 4.73 -104.63 -0.49 -1.15 16 25 C -0.12 -0.80 7.38 -39.57 -0.29 -1.09 16 26 C -0.09 -0.53 10.04 -39.59 -0.40 -0.93 16 27 C -0.16 -1.12 10.03 -39.51 -0.40 -1.52 16 28 C 0.10 0.91 7.30 -39.42 -0.29 0.62 16 29 F -0.14 -1.40 17.27 2.25 0.04 -1.37 16 30 C -0.14 -1.26 9.66 -39.51 -0.38 -1.64 16 31 H 0.06 0.37 6.70 -51.93 -0.35 0.02 16 32 H 0.07 0.40 5.91 -51.93 -0.31 0.09 16 33 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 34 H 0.35 4.23 8.03 -39.29 -0.32 3.92 16 35 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.03 0.29 7.44 -51.93 -0.39 -0.10 16 37 H 0.36 4.24 9.05 45.56 0.41 4.65 16 38 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 40 H 0.07 1.51 7.02 -51.93 -0.36 1.14 16 41 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 42 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16 43 H -0.01 -0.34 8.07 -51.93 -0.42 -0.75 16 44 H 0.03 0.94 6.34 -51.93 -0.33 0.61 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.37 2.29 5.54 45.56 0.25 2.54 16 47 H 0.13 0.56 6.15 -52.49 -0.32 0.24 16 48 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 49 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 50 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -33.40 401.38 -9.61 -43.01 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.52 Total: 7.10 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.19 Total: -9.41 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -1.06 Total: -47.63 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.91 Total: -14.89 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.40 -9.61 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843099485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.606 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds