Wall clock time and date at job start Sat Apr 11 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47250 * 2 1 4 4 C 1.48557 * 111.00172 * 289.77371 * 3 2 1 5 5 C 1.54380 * 104.59347 * 200.95977 * 4 3 2 6 6 C 1.54257 * 105.06245 * 23.85056 * 5 4 3 7 7 C 1.48557 * 111.00033 * 174.35053 * 3 2 1 8 8 H 1.09004 * 110.51340 * 40.21441 * 7 3 2 9 9 C 1.53001 * 110.41536 * 277.82066 * 7 3 2 10 10 N 1.46494 * 109.47263 * 180.26397 * 9 7 3 11 11 C 1.34777 * 120.00108 * 184.90240 * 10 9 7 12 12 S 1.71205 * 119.99918 * 4.95588 * 11 10 9 13 13 N 1.34775 * 120.00502 * 184.96276 * 11 10 9 14 14 C 1.47070 * 120.88608 * 175.14467 * 13 11 10 15 15 C 1.53244 * 108.52204 * 128.83588 * 14 13 11 16 16 N 1.46899 * 109.36207 * 53.81592 * 15 14 13 17 17 C 1.46908 * 110.99540 * 172.76102 * 16 15 14 18 18 C 1.50691 * 109.46962 * 73.03814 * 17 16 15 19 19 H 1.07997 * 120.00421 * 4.61649 * 18 17 16 20 20 C 1.37885 * 120.00065 * 184.61468 * 18 17 16 21 21 N 1.31504 * 120.00173 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99412 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47152 * 90.00218 * 22 20 18 24 24 H 1.48498 * 109.46882 * 209.99574 * 22 20 18 25 25 H 1.48496 * 109.47202 * 329.99682 * 22 20 18 26 26 C 1.46894 * 111.27013 * 296.93583 * 16 15 14 27 27 C 1.47085 * 120.87502 * 355.16344 * 13 11 10 28 28 H 1.09003 * 109.46620 * 299.99992 * 1 2 3 29 29 H 1.09003 * 109.47173 * 59.99776 * 1 2 3 30 30 H 1.08991 * 109.46927 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46620 * 240.00008 * 2 1 3 32 32 H 1.09003 * 109.47173 * 120.00224 * 2 1 3 33 33 H 1.09003 * 110.41435 * 82.18138 * 4 3 2 34 34 H 1.08997 * 110.41331 * 319.73540 * 4 3 2 35 35 H 1.09002 * 110.32652 * 264.95365 * 5 4 3 36 36 H 1.09006 * 110.41225 * 142.79104 * 5 4 3 37 37 H 1.08997 * 110.32555 * 241.10271 * 6 5 4 38 38 H 1.08999 * 110.41099 * 118.94044 * 6 5 4 39 39 H 1.09004 * 109.46701 * 60.26402 * 9 7 3 40 40 H 1.09000 * 109.47211 * 300.26711 * 9 7 3 41 41 H 0.96999 * 120.00242 * 4.89919 * 10 9 7 42 42 H 1.09002 * 109.63166 * 9.12464 * 14 13 11 43 43 H 1.08996 * 109.79152 * 248.63892 * 14 13 11 44 44 H 1.08999 * 109.49096 * 173.79423 * 15 14 13 45 45 H 1.09006 * 109.49310 * 293.84067 * 15 14 13 46 46 H 1.09001 * 109.46452 * 193.03367 * 17 16 15 47 47 H 1.08996 * 109.47012 * 313.03485 * 17 16 15 48 48 H 0.97003 * 119.99868 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.47307 * 303.10361 * 26 16 15 50 50 H 1.08997 * 109.51238 * 183.04942 * 26 16 15 51 51 H 1.08994 * 109.63091 * 350.87541 * 27 13 11 52 52 H 1.09003 * 109.62684 * 111.46173 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7549 2.0433 -1.3051 5 6 2.7533 3.2196 -1.3571 6 6 3.9003 2.8141 -0.4087 7 6 3.4984 1.4268 0.1365 8 1 3.9593 0.6370 -0.4568 9 6 3.9027 1.2935 1.6061 10 7 5.3625 1.3436 1.7175 11 6 5.9544 1.1460 2.9121 12 16 5.0113 0.7114 4.2733 13 7 7.2887 1.2906 3.0353 14 6 7.9416 1.1841 4.3489 15 6 9.1020 0.1895 4.2365 16 7 9.9854 0.5943 3.1349 17 6 11.1994 -0.2324 3.1027 18 6 10.8558 -1.6097 2.5971 19 1 9.8540 -1.8256 2.2564 20 6 11.8205 -2.5945 2.5693 21 7 11.5206 -3.7966 2.1286 22 14 13.5532 -2.2212 3.1592 23 1 13.6543 -2.5097 4.6124 24 1 14.5217 -3.0684 2.4179 25 1 13.8611 -0.7890 2.9162 26 6 9.2835 0.5502 1.8452 27 6 8.1305 1.5596 1.8596 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.7300 2.4126 -1.3436 34 1 1.9412 1.3501 -2.1253 35 1 2.2779 4.1356 -1.0062 36 1 3.1301 3.3540 -2.3711 37 1 3.9879 3.5309 0.4077 38 1 4.8407 2.7479 -0.9560 39 1 3.5408 0.3428 1.9977 40 1 3.4663 2.1120 2.1787 41 1 5.9032 1.5189 0.9315 42 1 7.2233 0.8268 5.0869 43 1 8.3231 2.1592 4.6515 44 1 9.6650 0.1806 5.1698 45 1 8.7086 -0.8078 4.0396 46 1 11.9332 0.2255 2.4394 47 1 11.6147 -0.3073 4.1076 48 1 12.1992 -4.4895 2.1094 49 1 8.8876 -0.4519 1.6811 50 1 9.9780 0.8027 1.0440 51 1 7.5373 1.4506 0.9518 52 1 8.5308 2.5717 1.9196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865268186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:31 Heat of formation + Delta-G solvation = 39.264396 kcal Electronic energy + Delta-G solvation = -28199.749055 eV Core-core repulsion = 24553.535050 eV Total energy + Delta-G solvation = -3646.214005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.199 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18613 -39.47280 -37.24999 -34.97916 -33.71573 -32.49283 -31.20338 -30.71334 -29.19774 -28.67105 -26.23422 -25.21343 -24.01571 -23.19099 -22.73812 -21.52732 -20.90157 -20.80716 -19.58719 -18.13980 -17.27768 -16.94594 -16.43538 -15.91703 -15.38436 -15.15021 -14.87235 -14.73278 -14.57321 -14.51799 -14.24509 -14.19118 -13.92924 -13.35301 -13.17572 -12.87669 -12.76886 -12.53325 -12.46602 -11.93697 -11.82210 -11.67239 -11.64901 -11.52894 -11.43348 -11.26736 -11.17617 -11.00973 -10.91892 -10.90086 -10.67608 -10.57828 -10.34153 -10.14360 -9.61189 -8.93527 -8.82842 -8.71099 -7.63521 -7.42715 -7.20860 -6.21941 -4.24077 1.57522 2.05506 2.66496 3.15790 3.19500 3.27907 3.29781 3.67887 4.11854 4.20207 4.28703 4.50100 4.53867 4.70511 4.75542 4.84660 4.87602 4.94707 5.04606 5.08248 5.18920 5.19777 5.21274 5.24287 5.31397 5.41119 5.47506 5.51425 5.57044 5.61615 5.64987 5.68575 5.69824 5.76495 5.78646 5.92935 5.99404 6.08373 6.23453 6.39853 6.43504 6.49142 6.56237 6.62717 6.71635 6.89725 6.93767 7.27567 7.37834 7.78209 7.81212 8.29977 8.78395 9.39616 10.90576 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002450 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.461654 B =11425.758998 C =11753.116531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.035 3.965 3 N -0.499 5.499 4 C 0.034 3.966 5 C -0.123 4.123 6 C -0.125 4.125 7 C 0.048 3.952 8 H 0.059 0.941 9 C 0.143 3.857 10 N -0.691 5.691 11 C 0.571 3.429 12 S -0.665 6.665 13 N -0.558 5.558 14 C 0.108 3.892 15 C 0.046 3.954 16 N -0.534 5.534 17 C 0.156 3.844 18 C -0.559 4.559 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.895 5.895 22 Si 0.880 3.120 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.264 1.264 26 C 0.050 3.950 27 C 0.098 3.902 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.394 0.606 42 H 0.124 0.876 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.051 0.949 46 H 0.031 0.969 47 H 0.027 0.973 48 H 0.265 0.735 49 H 0.055 0.945 50 H 0.085 0.915 51 H 0.072 0.928 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.431 14.404 -8.550 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 N -0.223 5.223 4 C -0.094 4.094 5 C -0.161 4.161 6 C -0.163 4.163 7 C -0.062 4.062 8 H 0.077 0.923 9 C 0.019 3.981 10 N -0.325 5.325 11 C 0.211 3.789 12 S -0.537 6.537 13 N -0.266 5.266 14 C -0.015 4.015 15 C -0.083 4.083 16 N -0.258 5.258 17 C 0.030 3.970 18 C -0.597 4.597 19 H 0.093 0.907 20 C -0.129 4.129 21 N -0.533 5.533 22 Si 0.707 3.293 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.079 4.079 27 C -0.028 4.028 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.233 0.767 42 H 0.142 0.858 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.090 0.910 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.104 14.708 -7.205 23.681 hybrid contribution 1.952 -1.177 -1.808 2.909 sum -15.152 13.531 -9.013 22.224 Atomic orbital electron populations 1.21729 0.94383 1.01753 1.02449 1.22338 0.96687 0.88808 1.01439 1.65201 1.09643 1.16516 1.30970 1.23128 1.00363 0.95795 0.90117 1.22278 0.95762 0.98607 0.99497 1.22429 0.98363 0.95985 0.99546 1.22853 0.89784 0.97792 0.95728 0.92275 1.21458 0.76564 1.05190 0.94937 1.44936 1.08929 1.70902 1.07694 1.22117 0.85533 0.81090 0.90152 1.93324 1.61889 1.69971 1.28515 1.47417 1.02887 1.65217 1.11068 1.22486 0.95257 1.00952 0.82811 1.22340 0.92974 0.96926 0.96072 1.62459 1.07059 1.54187 1.02058 1.20188 0.88087 0.91673 0.97074 1.21661 0.99084 0.94578 1.44425 0.90715 1.24979 0.98916 0.94749 0.94275 1.69918 1.34519 1.02707 1.46134 0.86787 0.84418 0.78893 0.79251 1.20064 1.21231 1.18836 1.22247 0.94225 0.97374 0.94084 1.22252 0.92549 1.01461 0.86495 0.91583 0.92936 0.92161 0.94559 0.90060 0.89748 0.93705 0.90751 0.91231 0.90391 0.91258 0.89215 0.89240 0.76707 0.85819 0.90347 0.89697 0.93100 0.95099 0.95447 0.92516 0.92678 0.89643 0.91020 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.97 37.16 0.37 -0.65 16 2 C 0.04 0.29 5.48 -3.82 -0.02 0.27 16 3 N -0.50 -4.14 5.05 -222.14 -1.12 -5.26 16 4 C 0.03 0.23 5.75 -2.18 -0.01 0.21 16 5 C -0.12 -0.75 7.00 -25.35 -0.18 -0.93 16 6 C -0.13 -0.85 6.06 -25.35 -0.15 -1.00 16 7 C 0.05 0.39 2.40 -66.07 -0.16 0.23 16 8 H 0.06 0.50 8.00 -51.93 -0.42 0.09 16 9 C 0.14 1.51 4.77 -4.04 -0.02 1.49 16 10 N -0.69 -7.71 5.30 -62.03 -0.33 -8.04 16 11 C 0.57 8.43 7.72 -86.92 -0.67 7.76 16 12 S -0.66 -12.30 26.96 -107.50 -2.90 -15.20 16 13 N -0.56 -7.98 3.01 -174.48 -0.53 -8.50 16 14 C 0.11 1.63 6.51 -3.61 -0.02 1.61 16 15 C 0.05 0.82 5.36 -3.70 -0.02 0.80 16 16 N -0.53 -9.91 4.83 -235.76 -1.14 -11.05 16 17 C 0.16 3.47 4.26 -4.98 -0.02 3.45 16 18 C -0.56 -14.76 8.45 -34.44 -0.29 -15.05 16 19 H 0.07 2.16 6.11 -52.49 -0.32 1.84 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 22 Si 0.88 20.59 27.38 -169.99 -4.65 15.94 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.26 -5.88 6.68 56.52 0.38 -5.51 16 26 C 0.05 0.84 5.00 -3.70 -0.02 0.82 16 27 C 0.10 1.21 6.54 -3.60 -0.02 1.19 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.33 7.27 -51.93 -0.38 -0.04 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 32 H 0.08 0.74 7.25 -51.93 -0.38 0.36 16 33 H 0.08 0.53 7.77 -51.93 -0.40 0.12 16 34 H 0.04 0.29 7.82 -51.93 -0.41 -0.11 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.58 7.82 -51.93 -0.41 0.17 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 1.14 6.86 -51.93 -0.36 0.78 16 40 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.39 3.54 5.71 -40.82 -0.23 3.30 16 42 H 0.12 2.03 5.99 -50.64 -0.30 1.73 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.45 7.96 -51.93 -0.41 1.03 16 45 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 46 H 0.03 0.69 7.52 -51.93 -0.39 0.30 16 47 H 0.03 0.61 7.08 -51.93 -0.37 0.25 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.06 1.10 6.25 -51.93 -0.32 0.78 16 50 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 51 H 0.07 0.69 5.73 -51.93 -0.30 0.39 16 52 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -31.84 400.29 -14.36 -46.19 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -9.16 Total: 3.52 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.34 Total: 2.15 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -2.34 Total: -58.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.65 Total: 15.94 kcal Atomic # 16 Polarization: -12.30 SS G_CDS: -2.90 Total: -15.20 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.84 -14.36 -46.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.457 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds