Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47250 * 2 1 4 4 C 1.48557 * 111.00172 * 289.77371 * 3 2 1 5 5 C 1.54380 * 104.59347 * 200.95977 * 4 3 2 6 6 C 1.54257 * 105.06245 * 23.85056 * 5 4 3 7 7 C 1.48557 * 111.00033 * 174.35053 * 3 2 1 8 8 H 1.09004 * 110.51340 * 40.21441 * 7 3 2 9 9 C 1.53001 * 110.41536 * 277.82066 * 7 3 2 10 10 N 1.46494 * 109.47263 * 180.26397 * 9 7 3 11 11 C 1.34777 * 120.00108 * 184.90240 * 10 9 7 12 12 S 1.71205 * 119.99918 * 4.95588 * 11 10 9 13 13 N 1.34775 * 120.00502 * 184.96276 * 11 10 9 14 14 C 1.47070 * 120.88608 * 175.14467 * 13 11 10 15 15 C 1.53244 * 108.52204 * 128.83588 * 14 13 11 16 16 N 1.46899 * 109.36207 * 53.81592 * 15 14 13 17 17 C 1.46908 * 110.99540 * 172.76102 * 16 15 14 18 18 C 1.50691 * 109.46962 * 73.03814 * 17 16 15 19 19 H 1.07997 * 120.00421 * 4.61649 * 18 17 16 20 20 C 1.37885 * 120.00065 * 184.61468 * 18 17 16 21 21 N 1.31504 * 120.00173 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99412 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47152 * 90.00218 * 22 20 18 24 24 H 1.48498 * 109.46882 * 209.99574 * 22 20 18 25 25 H 1.48496 * 109.47202 * 329.99682 * 22 20 18 26 26 C 1.46894 * 111.27013 * 296.93583 * 16 15 14 27 27 C 1.47085 * 120.87502 * 355.16344 * 13 11 10 28 28 H 1.09003 * 109.46620 * 299.99992 * 1 2 3 29 29 H 1.09003 * 109.47173 * 59.99776 * 1 2 3 30 30 H 1.08991 * 109.46927 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46620 * 240.00008 * 2 1 3 32 32 H 1.09003 * 109.47173 * 120.00224 * 2 1 3 33 33 H 1.09003 * 110.41435 * 82.18138 * 4 3 2 34 34 H 1.08997 * 110.41331 * 319.73540 * 4 3 2 35 35 H 1.09002 * 110.32652 * 264.95365 * 5 4 3 36 36 H 1.09006 * 110.41225 * 142.79104 * 5 4 3 37 37 H 1.08997 * 110.32555 * 241.10271 * 6 5 4 38 38 H 1.08999 * 110.41099 * 118.94044 * 6 5 4 39 39 H 1.09004 * 109.46701 * 60.26402 * 9 7 3 40 40 H 1.09000 * 109.47211 * 300.26711 * 9 7 3 41 41 H 0.96999 * 120.00242 * 4.89919 * 10 9 7 42 42 H 1.09002 * 109.63166 * 9.12464 * 14 13 11 43 43 H 1.08996 * 109.79152 * 248.63892 * 14 13 11 44 44 H 1.08999 * 109.49096 * 173.79423 * 15 14 13 45 45 H 1.09006 * 109.49310 * 293.84067 * 15 14 13 46 46 H 1.09001 * 109.46452 * 193.03367 * 17 16 15 47 47 H 1.08996 * 109.47012 * 313.03485 * 17 16 15 48 48 H 0.97003 * 119.99868 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.47307 * 303.10361 * 26 16 15 50 50 H 1.08997 * 109.51238 * 183.04942 * 26 16 15 51 51 H 1.08994 * 109.63091 * 350.87541 * 27 13 11 52 52 H 1.09003 * 109.62684 * 111.46173 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7549 2.0433 -1.3051 5 6 2.7533 3.2196 -1.3571 6 6 3.9003 2.8141 -0.4087 7 6 3.4984 1.4268 0.1365 8 1 3.9593 0.6370 -0.4568 9 6 3.9027 1.2935 1.6061 10 7 5.3625 1.3436 1.7175 11 6 5.9544 1.1460 2.9121 12 16 5.0113 0.7114 4.2733 13 7 7.2887 1.2906 3.0353 14 6 7.9416 1.1841 4.3489 15 6 9.1020 0.1895 4.2365 16 7 9.9854 0.5943 3.1349 17 6 11.1994 -0.2324 3.1027 18 6 10.8558 -1.6097 2.5971 19 1 9.8540 -1.8256 2.2564 20 6 11.8205 -2.5945 2.5693 21 7 11.5206 -3.7966 2.1286 22 14 13.5532 -2.2212 3.1592 23 1 13.6543 -2.5097 4.6124 24 1 14.5217 -3.0684 2.4179 25 1 13.8611 -0.7890 2.9162 26 6 9.2835 0.5502 1.8452 27 6 8.1305 1.5596 1.8596 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.7300 2.4126 -1.3436 34 1 1.9412 1.3501 -2.1253 35 1 2.2779 4.1356 -1.0062 36 1 3.1301 3.3540 -2.3711 37 1 3.9879 3.5309 0.4077 38 1 4.8407 2.7479 -0.9560 39 1 3.5408 0.3428 1.9977 40 1 3.4663 2.1120 2.1787 41 1 5.9032 1.5189 0.9315 42 1 7.2233 0.8268 5.0869 43 1 8.3231 2.1592 4.6515 44 1 9.6650 0.1806 5.1698 45 1 8.7086 -0.8078 4.0396 46 1 11.9332 0.2255 2.4394 47 1 11.6147 -0.3073 4.1076 48 1 12.1992 -4.4895 2.1094 49 1 8.8876 -0.4519 1.6811 50 1 9.9780 0.8027 1.0440 51 1 7.5373 1.4506 0.9518 52 1 8.5308 2.5717 1.9196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865268186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = 17.225280 kcal Electronic energy + Delta-G solvation = -28200.704742 eV Core-core repulsion = 24553.535050 eV Total energy + Delta-G solvation = -3647.169692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25823 -40.34222 -38.52207 -36.27547 -34.54168 -34.25666 -32.45280 -31.72972 -30.29363 -29.62998 -27.69937 -26.18573 -25.39772 -24.14464 -23.81487 -23.04166 -21.66205 -21.46040 -20.91987 -19.38533 -18.82389 -18.41503 -17.13580 -16.88768 -16.49806 -16.35625 -16.18306 -15.92517 -15.88921 -15.69646 -15.47117 -15.25518 -14.73252 -14.58420 -14.40372 -13.99324 -13.84846 -13.71138 -13.34844 -13.21269 -13.10971 -12.70864 -12.64636 -12.48565 -12.40360 -12.35793 -12.24426 -12.20794 -12.13679 -11.99254 -11.83861 -11.79391 -11.69297 -11.60677 -11.41947 -10.82022 -9.95938 -9.56595 -9.19119 -8.95315 -8.67722 -8.34280 -6.40980 0.33281 0.81153 1.36103 1.36884 1.46256 1.48480 2.11928 2.31799 2.99508 3.01746 3.13278 3.50532 3.55595 3.68764 3.90983 3.92281 3.98432 4.06020 4.17514 4.22644 4.23348 4.34604 4.36244 4.42392 4.43103 4.58945 4.61736 4.68668 4.69404 4.78802 4.81544 4.91149 4.92214 4.94203 4.97479 4.99983 5.03561 5.05955 5.07949 5.13092 5.15469 5.26997 5.33876 5.39249 5.45328 5.66891 5.83837 5.98289 6.00582 6.20122 6.24696 6.27515 6.66644 7.26853 8.81763 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002450 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.461654 B =11425.758998 C =11753.116531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.035 3.965 3 N -0.511 5.511 4 C 0.033 3.967 5 C -0.120 4.120 6 C -0.123 4.123 7 C 0.053 3.947 8 H 0.060 0.940 9 C 0.151 3.849 10 N -0.667 5.667 11 C 0.586 3.414 12 S -0.743 6.743 13 N -0.558 5.558 14 C 0.120 3.880 15 C 0.051 3.949 16 N -0.521 5.521 17 C 0.161 3.839 18 C -0.554 4.554 19 H 0.033 0.967 20 C 0.010 3.990 21 N -0.949 5.949 22 Si 0.950 3.050 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.238 1.238 26 C 0.050 3.950 27 C 0.107 3.893 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.411 0.589 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.005 0.995 46 H 0.041 0.959 47 H 0.032 0.968 48 H 0.266 0.734 49 H 0.012 0.988 50 H 0.096 0.904 51 H 0.104 0.896 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.407 17.533 -10.007 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 N -0.236 5.236 4 C -0.094 4.094 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.056 4.056 8 H 0.078 0.922 9 C 0.027 3.973 10 N -0.300 5.300 11 C 0.222 3.778 12 S -0.616 6.616 13 N -0.265 5.265 14 C -0.004 4.004 15 C -0.078 4.078 16 N -0.244 5.244 17 C 0.034 3.966 18 C -0.593 4.593 19 H 0.051 0.949 20 C -0.188 4.188 21 N -0.589 5.589 22 Si 0.773 3.227 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.161 1.161 26 C -0.080 4.080 27 C -0.017 4.017 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.252 0.748 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.024 0.976 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.031 0.969 50 H 0.114 0.886 51 H 0.122 0.878 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.099 17.880 -8.705 25.586 hybrid contribution 1.540 -2.185 -1.435 3.034 sum -14.559 15.695 -10.140 23.688 Atomic orbital electron populations 1.21688 0.93535 1.02175 1.02428 1.22321 0.97416 0.88857 1.00740 1.65189 1.09546 1.16562 1.32338 1.23189 1.01023 0.96023 0.89213 1.22284 0.95181 0.98199 1.00122 1.22443 0.99497 0.94436 0.99702 1.22783 0.90067 0.99105 0.93654 0.92162 1.21387 0.75765 1.03462 0.96731 1.44857 1.09441 1.68727 1.06946 1.21635 0.85333 0.80783 0.90017 1.93500 1.63372 1.73197 1.31491 1.47471 1.02780 1.64723 1.11561 1.22309 0.93719 1.01257 0.83073 1.22308 0.93802 0.95478 0.96218 1.62499 1.06462 1.52324 1.03125 1.20078 0.89944 0.89600 0.97013 1.21936 0.97212 0.96871 1.43240 0.94867 1.25963 1.03849 0.94392 0.94614 1.70085 1.36164 1.04143 1.48521 0.85666 0.78423 0.79980 0.78590 1.19581 1.21346 1.16094 1.22290 0.95707 0.96598 0.93389 1.22374 0.91092 1.01427 0.86837 0.92489 0.91966 0.91577 0.94227 0.91774 0.89229 0.93297 0.90574 0.89750 0.90842 0.89513 0.91617 0.90187 0.74782 0.87204 0.87550 0.88892 0.97620 0.94119 0.94988 0.92561 0.96944 0.88581 0.87803 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.97 71.98 0.72 -1.19 16 2 C 0.03 0.56 5.48 86.31 0.47 1.03 16 3 N -0.51 -8.02 5.05 -856.71 -4.33 -12.34 16 4 C 0.03 0.38 5.75 86.45 0.50 0.87 16 5 C -0.12 -1.12 7.00 31.49 0.22 -0.90 16 6 C -0.12 -1.32 6.06 31.49 0.19 -1.13 16 7 C 0.05 0.80 2.40 45.06 0.11 0.91 16 8 H 0.06 0.92 8.00 -2.38 -0.02 0.90 16 9 C 0.15 3.13 4.77 86.38 0.41 3.54 16 10 N -0.67 -13.87 5.30 -350.17 -1.86 -15.72 16 11 C 0.59 16.85 7.72 179.06 1.38 18.23 16 12 S -0.74 -28.33 26.96 -56.49 -1.52 -29.85 16 13 N -0.56 -15.04 3.01 -705.94 -2.12 -17.16 16 14 C 0.12 3.49 6.51 86.35 0.56 4.05 16 15 C 0.05 1.82 5.36 86.39 0.46 2.28 16 16 N -0.52 -18.60 4.83 -899.82 -4.35 -22.94 16 17 C 0.16 6.94 4.26 85.55 0.36 7.30 16 18 C -0.55 -29.84 8.45 25.60 0.22 -29.63 16 19 H 0.03 2.03 6.11 -2.91 -0.02 2.01 16 20 C 0.01 0.56 5.47 84.66 0.46 1.02 16 21 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 22 Si 0.95 42.05 27.38 68.60 1.88 43.92 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.24 -9.46 6.68 99.48 0.66 -8.80 16 26 C 0.05 1.58 5.00 86.39 0.43 2.02 16 27 C 0.11 2.30 6.54 86.35 0.56 2.86 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.72 7.27 -2.39 -0.02 0.70 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.60 7.87 -2.39 -0.02 0.58 16 32 H 0.06 1.23 7.25 -2.39 -0.02 1.21 16 33 H 0.09 0.94 7.77 -2.39 -0.02 0.92 16 34 H 0.05 0.53 7.82 -2.39 -0.02 0.51 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.07 0.89 7.82 -2.39 -0.02 0.87 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 1.74 6.86 -2.38 -0.02 1.72 16 40 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 41 H 0.41 6.09 5.71 -92.71 -0.53 5.56 16 42 H 0.11 3.64 5.99 -3.20 -0.02 3.62 16 43 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.09 3.11 7.96 -2.39 -0.02 3.09 16 45 H 0.01 0.24 7.66 -2.38 -0.02 0.22 16 46 H 0.04 1.71 7.52 -2.39 -0.02 1.69 16 47 H 0.03 1.36 7.08 -2.39 -0.02 1.35 16 48 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.01 0.50 6.25 -2.39 -0.01 0.49 16 50 H 0.10 2.87 8.11 -2.39 -0.02 2.85 16 51 H 0.10 1.58 5.73 -2.39 -0.01 1.56 16 52 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -73.62 400.29 -4.61 -78.23 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.32 Total: 22.46 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 7.07 Total: 11.28 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -12.35 Total: -126.05 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.92 kcal Atomic # 16 Polarization: -28.33 SS G_CDS: -1.52 Total: -29.85 kcal Total: -73.62 -4.61 -78.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.454 kcal (2) G-P(sol) polarization free energy of solvation -73.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds