Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.46767 * 2 1 4 4 C 1.35041 * 125.92409 * 125.00356 * 3 2 1 5 5 C 1.35084 * 107.97535 * 180.02562 * 4 3 2 6 6 C 1.50695 * 126.07291 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47374 * 106.83912 * 6 5 4 8 8 C 1.46900 * 111.00110 * 183.35358 * 7 6 5 9 9 C 1.53236 * 109.34216 * 187.24849 * 8 7 6 10 10 N 1.47085 * 108.52179 * 306.16982 * 9 8 7 11 11 C 1.36934 * 120.88442 * 231.18244 * 10 9 8 12 12 H 1.08000 * 119.99657 * 32.34109 * 11 10 9 13 13 C 1.38804 * 119.99997 * 212.06550 * 11 10 9 14 14 N 1.31612 * 120.00224 * 12.26269 * 13 11 10 15 15 Si 1.86808 * 119.99842 * 192.26029 * 13 11 10 16 16 H 1.48498 * 109.46982 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47084 * 119.99984 * 15 13 11 18 18 H 1.48501 * 109.47090 * 240.00307 * 15 13 11 19 19 C 1.47083 * 118.23490 * 51.45317 * 10 9 8 20 20 C 1.46902 * 110.99704 * 307.65273 * 7 6 5 21 21 C 1.40841 * 107.84836 * 0.22291 * 5 4 3 22 22 C 1.48430 * 126.03641 * 179.77729 * 21 5 4 23 23 C 1.39324 * 120.11729 * 317.19426 * 22 21 5 24 24 C 1.38025 * 119.87691 * 179.72007 * 23 22 21 25 25 C 1.38319 * 120.11880 * 0.55845 * 24 23 22 26 26 C 1.38319 * 120.23865 * 359.72071 * 25 24 23 27 27 C 1.38022 * 120.12413 * 359.97438 * 26 25 24 28 28 N 1.31615 * 107.92726 * 359.61895 * 21 5 4 29 29 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46957 * 299.99855 * 1 2 3 31 31 H 1.09002 * 109.46996 * 59.99899 * 1 2 3 32 32 H 1.09000 * 109.47207 * 240.00582 * 2 1 3 33 33 H 1.08990 * 109.47291 * 120.00396 * 2 1 3 34 34 H 1.08003 * 126.01388 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.47490 * 346.83501 * 6 5 4 36 36 H 1.09004 * 109.47278 * 226.83431 * 6 5 4 37 37 H 1.09003 * 109.49716 * 67.29052 * 8 7 6 38 38 H 1.09001 * 109.49547 * 307.20823 * 8 7 6 39 39 H 1.08990 * 109.63252 * 186.46061 * 9 8 7 40 40 H 1.08999 * 109.78622 * 65.97220 * 9 8 7 41 41 H 0.97002 * 119.99951 * 180.02562 * 14 13 11 42 42 H 1.09005 * 109.62848 * 68.25617 * 19 10 9 43 43 H 1.09002 * 109.62694 * 188.83180 * 19 10 9 44 44 H 1.09006 * 109.49005 * 292.70774 * 20 7 6 45 45 H 1.08998 * 109.49100 * 52.75902 * 20 7 6 46 46 H 1.08005 * 120.05879 * 359.97438 * 23 22 21 47 47 H 1.07994 * 119.93774 * 180.27628 * 24 23 22 48 48 H 1.07995 * 119.88151 * 179.74499 * 25 24 23 49 49 H 1.08002 * 119.93593 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.06068 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8738 1.9193 0.8957 5 6 3.0765 3.2106 0.5551 6 6 3.9612 4.1914 1.2807 7 7 5.1756 4.4331 0.4904 8 6 6.0997 5.3244 1.2044 9 6 7.2633 5.6957 0.2791 10 7 7.8665 4.4561 -0.2336 11 6 9.2165 4.2434 -0.1477 12 1 9.7748 4.6469 0.6841 13 6 9.8664 3.5045 -1.1267 14 7 9.2476 3.2142 -2.2514 15 14 11.6194 2.9223 -0.8478 16 1 12.0856 3.3772 0.4867 17 1 11.6640 1.4392 -0.9093 18 1 12.5021 3.4882 -1.8994 19 6 6.9819 3.4535 -0.8465 20 6 5.8286 3.1679 0.1283 21 6 2.3097 3.4791 -0.5953 22 6 2.2303 4.7786 -1.3082 23 6 2.1223 5.9659 -0.5874 24 6 2.0547 7.1720 -1.2552 25 6 2.0823 7.2023 -2.6378 26 6 2.1835 6.0260 -3.3584 27 6 2.2581 4.8149 -2.7007 28 7 1.6786 2.3733 -0.9287 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.3172 1.4074 1.7370 35 1 4.2358 3.7826 2.2531 36 1 3.4253 5.1304 1.4196 37 1 6.4856 4.8160 2.0880 38 1 5.5720 6.2291 1.5062 39 1 8.0088 6.2619 0.8373 40 1 6.8958 6.2956 -0.5535 41 1 9.7017 2.6975 -2.9354 42 1 6.5847 3.8404 -1.7850 43 1 7.5412 2.5367 -1.0328 44 1 6.2182 2.6896 1.0270 45 1 5.1041 2.5086 -0.3497 46 1 2.0958 5.9429 0.4921 47 1 1.9755 8.0932 -0.6973 48 1 2.0249 8.1478 -3.1565 49 1 2.2050 6.0554 -4.4378 50 1 2.3376 3.8971 -3.2644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893993345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = 138.830699 kcal Electronic energy + Delta-G solvation = -30227.657027 eV Core-core repulsion = 26450.316590 eV Total energy + Delta-G solvation = -3777.340437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.26347 -38.67362 -37.85327 -34.99036 -34.08142 -31.72561 -31.61862 -30.73825 -29.95574 -29.73942 -28.96540 -26.77237 -24.51934 -24.08339 -22.51314 -22.45081 -22.26089 -21.66098 -20.34349 -19.48021 -18.89144 -17.10603 -16.59829 -16.39587 -15.66025 -15.12559 -14.96383 -14.71687 -14.48425 -14.34544 -14.18288 -13.82745 -13.59701 -13.34974 -13.24138 -13.06594 -13.00704 -12.78031 -12.65625 -12.39450 -12.28704 -12.01467 -11.62710 -11.52840 -11.31321 -11.03003 -10.97745 -10.90501 -10.72807 -10.39273 -10.37671 -10.18021 -9.97180 -9.70427 -9.53922 -9.46633 -8.70297 -8.52482 -8.44438 -8.06634 -7.57913 -6.49185 -5.70881 -3.18075 1.29891 1.64453 2.02907 2.46798 2.91673 3.39377 3.46800 3.49057 4.06300 4.30339 4.53704 4.65999 4.70400 4.76385 4.85501 4.99300 5.09030 5.15314 5.26962 5.28897 5.39143 5.41414 5.47793 5.55431 5.58064 5.62950 5.70178 5.82455 5.84663 5.96431 6.01608 6.06510 6.12268 6.23379 6.26939 6.30357 6.41257 6.45934 6.49841 6.68022 6.69606 6.75916 6.81771 6.84874 7.05574 7.07318 7.17246 7.35896 7.75431 7.77797 7.81009 7.85727 7.94186 8.54659 9.29969 9.92016 10.54346 11.37303 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003720 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.208085 B = 7525.579085 C = 8960.289717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 N -0.373 5.373 4 C 0.054 3.946 5 C -0.205 4.205 6 C 0.129 3.871 7 N -0.521 5.521 8 C 0.046 3.954 9 C 0.150 3.850 10 N -0.595 5.595 11 C -0.252 4.252 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.902 5.902 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.185 3.815 20 C 0.041 3.959 21 C 0.132 3.868 22 C 0.007 3.993 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.090 4.090 28 N -0.286 5.286 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.025 0.975 41 H 0.252 0.748 42 H 0.025 0.975 43 H 0.078 0.922 44 H 0.018 0.982 45 H 0.058 0.942 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 -0.843 5.545 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 N -0.156 5.156 4 C -0.091 4.091 5 C -0.216 4.216 6 C 0.000 4.000 7 N -0.246 5.246 8 C -0.083 4.083 9 C 0.024 3.976 10 N -0.318 5.318 11 C -0.382 4.382 12 H 0.080 0.920 13 C -0.194 4.194 14 N -0.546 5.546 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.217 1.217 19 C 0.059 3.941 20 C -0.088 4.088 21 C -0.033 4.033 22 C 0.005 3.995 23 C -0.107 4.107 24 C -0.139 4.139 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.109 4.109 28 N -0.108 5.108 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.187 0.813 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.096 0.904 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.415 -1.466 4.176 20.889 hybrid contribution 1.878 -0.641 1.396 2.426 sum -18.537 -2.107 5.572 19.471 Atomic orbital electron populations 1.22051 0.93962 1.02614 1.03549 1.21645 0.95856 0.77584 1.03750 1.48471 1.36047 1.09877 1.21161 1.22243 0.95830 0.94390 0.96684 1.19909 1.06218 0.94909 1.00571 1.20415 0.90586 0.96145 0.92858 1.62003 1.05210 1.15194 1.42148 1.22588 0.94467 0.95429 0.95839 1.20956 0.92190 0.89682 0.94812 1.44079 1.03358 1.14265 1.70103 1.19190 0.83629 1.31733 1.03643 0.91976 1.25167 0.97565 1.01939 0.94710 1.70014 1.36907 1.41901 1.05807 0.86251 0.84933 0.78216 0.77548 1.20288 1.21686 1.21660 1.20841 0.87626 0.94001 0.91656 1.22892 0.97194 0.89762 0.98930 1.20522 0.95881 0.92381 0.94495 1.17640 1.00533 0.89097 0.92254 1.21028 0.98731 0.91346 0.99577 1.20967 1.01049 0.97413 0.94456 1.21136 1.00143 0.98000 0.94290 1.21016 1.00746 0.92362 0.99788 1.21134 0.98371 0.98149 0.93256 1.77515 1.23983 0.96173 1.13106 0.90896 0.92200 0.91076 0.89808 0.88780 0.81323 0.95382 0.90688 0.95735 0.92197 0.92896 0.95750 0.93762 0.95702 0.90357 0.96399 0.92342 0.86065 0.86120 0.86366 0.86146 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.09 37.16 0.38 -0.89 16 2 C 0.13 1.16 7.22 -4.03 -0.03 1.13 16 3 N -0.37 -4.80 3.68 -61.40 -0.23 -5.03 16 4 C 0.05 0.70 10.84 -17.26 -0.19 0.51 16 5 C -0.20 -3.05 3.89 -104.76 -0.41 -3.46 16 6 C 0.13 1.93 5.07 -4.98 -0.03 1.90 16 7 N -0.52 -9.59 4.72 -235.47 -1.11 -10.70 16 8 C 0.05 0.85 5.62 -3.70 -0.02 0.83 16 9 C 0.15 3.33 6.69 -3.60 -0.02 3.30 16 10 N -0.59 -15.60 3.01 -171.74 -0.52 -16.11 16 11 C -0.25 -7.12 9.60 -15.06 -0.14 -7.27 16 12 H 0.06 1.73 7.86 -52.49 -0.41 1.31 16 13 C 0.00 0.14 5.01 -17.44 -0.09 0.05 16 14 N -0.90 -26.97 11.25 55.49 0.62 -26.35 16 15 Si 0.90 22.07 29.57 -169.99 -5.03 17.05 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 C 0.18 4.69 5.38 -3.37 -0.02 4.67 16 20 C 0.04 0.86 5.36 -3.46 -0.02 0.84 16 21 C 0.13 2.10 6.67 -82.78 -0.55 1.55 16 22 C 0.01 0.10 5.74 -104.89 -0.60 -0.50 16 23 C -0.09 -1.19 8.91 -39.26 -0.35 -1.54 16 24 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 25 C -0.12 -1.43 10.04 -39.52 -0.40 -1.83 16 26 C -0.12 -1.60 10.03 -39.63 -0.40 -2.00 16 27 C -0.09 -1.35 9.78 -39.26 -0.38 -1.74 16 28 N -0.29 -4.44 12.45 33.43 0.42 -4.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.07 1.03 5.80 -51.93 -0.30 0.73 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 39 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 2.19 6.38 -51.93 -0.33 1.86 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.19 6.25 -51.93 -0.32 0.86 16 46 H 0.12 1.50 6.21 -52.48 -0.33 1.17 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 48 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -33.37 400.46 -11.47 -44.84 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.00 Total: 0.59 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.67 Total: -6.30 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.81 Total: -62.22 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.37 -11.47 -44.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893993345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.672 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds