Wall clock time and date at job start Sat Apr 11 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.46767 * 2 1 4 4 C 1.35041 * 125.92409 * 125.00356 * 3 2 1 5 5 C 1.35084 * 107.97535 * 180.02562 * 4 3 2 6 6 C 1.50695 * 126.07291 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47374 * 106.83912 * 6 5 4 8 8 C 1.46900 * 111.00110 * 183.35358 * 7 6 5 9 9 C 1.53236 * 109.34216 * 187.24849 * 8 7 6 10 10 N 1.47085 * 108.52179 * 306.16982 * 9 8 7 11 11 C 1.36934 * 120.88442 * 231.18244 * 10 9 8 12 12 H 1.08000 * 119.99657 * 32.34109 * 11 10 9 13 13 C 1.38804 * 119.99997 * 212.06550 * 11 10 9 14 14 N 1.31612 * 120.00224 * 12.26269 * 13 11 10 15 15 Si 1.86808 * 119.99842 * 192.26029 * 13 11 10 16 16 H 1.48498 * 109.46982 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47084 * 119.99984 * 15 13 11 18 18 H 1.48501 * 109.47090 * 240.00307 * 15 13 11 19 19 C 1.47083 * 118.23490 * 51.45317 * 10 9 8 20 20 C 1.46902 * 110.99704 * 307.65273 * 7 6 5 21 21 C 1.40841 * 107.84836 * 0.22291 * 5 4 3 22 22 C 1.48430 * 126.03641 * 179.77729 * 21 5 4 23 23 C 1.39324 * 120.11729 * 317.19426 * 22 21 5 24 24 C 1.38025 * 119.87691 * 179.72007 * 23 22 21 25 25 C 1.38319 * 120.11880 * 0.55845 * 24 23 22 26 26 C 1.38319 * 120.23865 * 359.72071 * 25 24 23 27 27 C 1.38022 * 120.12413 * 359.97438 * 26 25 24 28 28 N 1.31615 * 107.92726 * 359.61895 * 21 5 4 29 29 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46957 * 299.99855 * 1 2 3 31 31 H 1.09002 * 109.46996 * 59.99899 * 1 2 3 32 32 H 1.09000 * 109.47207 * 240.00582 * 2 1 3 33 33 H 1.08990 * 109.47291 * 120.00396 * 2 1 3 34 34 H 1.08003 * 126.01388 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.47490 * 346.83501 * 6 5 4 36 36 H 1.09004 * 109.47278 * 226.83431 * 6 5 4 37 37 H 1.09003 * 109.49716 * 67.29052 * 8 7 6 38 38 H 1.09001 * 109.49547 * 307.20823 * 8 7 6 39 39 H 1.08990 * 109.63252 * 186.46061 * 9 8 7 40 40 H 1.08999 * 109.78622 * 65.97220 * 9 8 7 41 41 H 0.97002 * 119.99951 * 180.02562 * 14 13 11 42 42 H 1.09005 * 109.62848 * 68.25617 * 19 10 9 43 43 H 1.09002 * 109.62694 * 188.83180 * 19 10 9 44 44 H 1.09006 * 109.49005 * 292.70774 * 20 7 6 45 45 H 1.08998 * 109.49100 * 52.75902 * 20 7 6 46 46 H 1.08005 * 120.05879 * 359.97438 * 23 22 21 47 47 H 1.07994 * 119.93774 * 180.27628 * 24 23 22 48 48 H 1.07995 * 119.88151 * 179.74499 * 25 24 23 49 49 H 1.08002 * 119.93593 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.06068 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8738 1.9193 0.8957 5 6 3.0765 3.2106 0.5551 6 6 3.9612 4.1914 1.2807 7 7 5.1756 4.4331 0.4904 8 6 6.0997 5.3244 1.2044 9 6 7.2633 5.6957 0.2791 10 7 7.8665 4.4561 -0.2336 11 6 9.2165 4.2434 -0.1477 12 1 9.7748 4.6469 0.6841 13 6 9.8664 3.5045 -1.1267 14 7 9.2476 3.2142 -2.2514 15 14 11.6194 2.9223 -0.8478 16 1 12.0856 3.3772 0.4867 17 1 11.6640 1.4392 -0.9093 18 1 12.5021 3.4882 -1.8994 19 6 6.9819 3.4535 -0.8465 20 6 5.8286 3.1679 0.1283 21 6 2.3097 3.4791 -0.5953 22 6 2.2303 4.7786 -1.3082 23 6 2.1223 5.9659 -0.5874 24 6 2.0547 7.1720 -1.2552 25 6 2.0823 7.2023 -2.6378 26 6 2.1835 6.0260 -3.3584 27 6 2.2581 4.8149 -2.7007 28 7 1.6786 2.3733 -0.9287 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.3172 1.4074 1.7370 35 1 4.2358 3.7826 2.2531 36 1 3.4253 5.1304 1.4196 37 1 6.4856 4.8160 2.0880 38 1 5.5720 6.2291 1.5062 39 1 8.0088 6.2619 0.8373 40 1 6.8958 6.2956 -0.5535 41 1 9.7017 2.6975 -2.9354 42 1 6.5847 3.8404 -1.7850 43 1 7.5412 2.5367 -1.0328 44 1 6.2182 2.6896 1.0270 45 1 5.1041 2.5086 -0.3497 46 1 2.0958 5.9429 0.4921 47 1 1.9755 8.0932 -0.6973 48 1 2.0249 8.1478 -3.1565 49 1 2.2050 6.0554 -4.4378 50 1 2.3376 3.8971 -3.2644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893993345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:10 Heat of formation + Delta-G solvation = 119.304754 kcal Electronic energy + Delta-G solvation = -30228.503735 eV Core-core repulsion = 26450.316590 eV Total energy + Delta-G solvation = -3778.187145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.29848 -39.67684 -39.47163 -36.41341 -35.34834 -33.45107 -32.61007 -31.85968 -31.58049 -31.21425 -29.98009 -28.37446 -26.07092 -25.05700 -24.19804 -24.01436 -23.34726 -22.71895 -21.36776 -20.85902 -20.37699 -18.68988 -17.99499 -17.34980 -17.07189 -16.52073 -16.12619 -15.98272 -15.81995 -15.64644 -15.43321 -15.24838 -14.94275 -14.88064 -14.74312 -14.48450 -14.22524 -13.90290 -13.72845 -13.43655 -13.28368 -13.12841 -12.94476 -12.93418 -12.81360 -12.65029 -12.30964 -12.24978 -12.07508 -11.99689 -11.93494 -11.80702 -11.56194 -11.42833 -11.35017 -10.60534 -10.54430 -9.73078 -9.59415 -9.16889 -8.99158 -8.57824 -7.86047 -5.38140 0.26360 0.61512 1.01986 1.45241 1.45878 1.57425 1.59029 1.82299 2.50269 3.03251 3.21367 3.31096 3.46572 3.73173 3.82550 3.98866 4.08668 4.10057 4.19248 4.21464 4.34330 4.35410 4.37028 4.40062 4.42726 4.58180 4.63073 4.66546 4.73468 4.75630 4.78623 4.80269 4.84253 4.95980 5.00841 5.05075 5.13068 5.20793 5.22556 5.23957 5.25873 5.38108 5.46995 5.62739 5.67558 5.69342 5.72145 5.77264 6.14700 6.18323 6.31330 6.41236 6.43834 6.74229 7.14889 7.84426 8.42401 9.20165 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003720 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.208085 B = 7525.579085 C = 8960.289717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 N -0.370 5.370 4 C 0.062 3.938 5 C -0.230 4.230 6 C 0.136 3.864 7 N -0.531 5.531 8 C 0.058 3.942 9 C 0.146 3.854 10 N -0.612 5.612 11 C -0.264 4.264 12 H 0.067 0.933 13 C -0.049 4.049 14 N -0.938 5.938 15 Si 0.970 3.030 16 H -0.263 1.263 17 H -0.290 1.290 18 H -0.292 1.292 19 C 0.197 3.803 20 C 0.068 3.932 21 C 0.117 3.883 22 C -0.015 4.015 23 C -0.096 4.096 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.117 4.117 28 N -0.317 5.317 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.202 0.798 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.027 0.973 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.009 0.991 41 H 0.249 0.751 42 H -0.015 1.015 43 H 0.044 0.956 44 H 0.019 0.981 45 H 0.059 0.941 46 H 0.134 0.866 47 H 0.151 0.849 48 H 0.147 0.853 49 H 0.135 0.865 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 -0.470 8.100 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.002 3.998 3 N -0.153 5.153 4 C -0.084 4.084 5 C -0.241 4.241 6 C 0.009 3.991 7 N -0.256 5.256 8 C -0.071 4.071 9 C 0.020 3.980 10 N -0.336 5.336 11 C -0.395 4.395 12 H 0.085 0.915 13 C -0.245 4.245 14 N -0.584 5.584 15 Si 0.798 3.202 16 H -0.187 1.187 17 H -0.217 1.217 18 H -0.218 1.218 19 C 0.071 3.929 20 C -0.062 4.062 21 C -0.048 4.048 22 C -0.016 4.016 23 C -0.115 4.115 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.137 4.137 28 N -0.140 5.140 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.219 0.781 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.058 0.942 42 H 0.003 0.997 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.078 0.922 46 H 0.152 0.848 47 H 0.169 0.831 48 H 0.164 0.836 49 H 0.153 0.847 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.972 -1.080 6.752 22.058 hybrid contribution 1.970 -0.745 0.561 2.179 sum -19.002 -1.825 7.313 20.442 Atomic orbital electron populations 1.21987 0.93244 1.03960 1.02169 1.22063 0.96532 0.75803 1.05423 1.48857 1.35490 1.10652 1.20278 1.22746 0.94824 0.93961 0.96911 1.20009 1.07144 0.95935 1.01023 1.20412 0.88674 0.97288 0.92772 1.61902 1.06025 1.13890 1.43824 1.22430 0.93363 0.96888 0.94409 1.21114 0.93770 0.88104 0.94974 1.44354 1.03160 1.15898 1.70213 1.19557 0.84781 1.31467 1.03650 0.91500 1.25977 1.01687 1.02381 0.94423 1.70199 1.38605 1.42835 1.06754 0.85172 0.79886 0.77353 0.77832 1.18731 1.21668 1.21846 1.20514 0.88671 0.92188 0.91518 1.22408 0.95317 0.91032 0.97439 1.20746 0.96312 0.92646 0.95066 1.17892 1.01380 0.89925 0.92452 1.21242 0.98764 0.91222 1.00257 1.21374 0.99574 0.98095 0.94742 1.21514 0.99070 0.98628 0.94657 1.21283 1.00447 0.92254 1.00813 1.21200 1.00310 0.98448 0.93730 1.77456 1.25079 0.96970 1.14511 0.88153 0.92489 0.93451 0.89810 0.85402 0.78137 0.93696 0.89118 0.95521 0.88622 0.92140 0.97348 0.94221 0.99722 0.93753 0.96309 0.92235 0.84809 0.83127 0.83570 0.84674 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.09 71.98 0.73 -1.48 16 2 C 0.12 1.91 7.22 86.38 0.62 2.54 16 3 N -0.37 -9.19 3.68 -348.16 -1.28 -10.47 16 4 C 0.06 1.50 10.84 83.47 0.90 2.40 16 5 C -0.23 -6.55 3.89 -19.95 -0.08 -6.63 16 6 C 0.14 3.75 5.07 85.56 0.43 4.18 16 7 N -0.53 -18.85 4.72 -898.88 -4.25 -23.10 16 8 C 0.06 2.01 5.62 86.38 0.49 2.50 16 9 C 0.15 6.39 6.69 86.35 0.58 6.97 16 10 N -0.61 -32.59 3.01 -697.25 -2.10 -34.69 16 11 C -0.26 -15.06 9.60 84.03 0.81 -14.26 16 12 H 0.07 3.68 7.86 -2.91 -0.02 3.66 16 13 C -0.05 -2.85 5.01 84.86 0.43 -2.42 16 14 N -0.94 -58.05 11.25 21.65 0.24 -57.81 16 15 Si 0.97 45.86 29.57 68.60 2.03 47.89 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 19 C 0.20 10.40 5.38 86.50 0.47 10.86 16 20 C 0.07 2.79 5.36 86.53 0.46 3.25 16 21 C 0.12 3.73 6.67 42.53 0.28 4.01 16 22 C -0.01 -0.46 5.74 -20.04 -0.12 -0.57 16 23 C -0.10 -2.51 8.91 22.48 0.20 -2.31 16 24 C -0.12 -2.71 10.03 22.24 0.22 -2.49 16 25 C -0.12 -2.77 10.04 22.31 0.22 -2.55 16 26 C -0.13 -3.47 10.03 22.24 0.22 -3.25 16 27 C -0.12 -3.73 9.78 22.48 0.22 -3.51 16 28 N -0.32 -10.06 12.45 -48.16 -0.60 -10.66 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.13 1.16 8.07 -2.39 -0.02 1.14 16 34 H 0.20 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.09 2.21 5.80 -2.38 -0.01 2.20 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 2.66 8.11 -2.39 -0.02 2.64 16 39 H 0.06 2.51 7.95 -2.39 -0.02 2.49 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 43 H 0.04 2.60 6.38 -2.39 -0.02 2.59 16 44 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.06 2.44 6.25 -2.39 -0.01 2.42 16 46 H 0.13 3.04 6.21 -2.91 -0.02 3.03 16 47 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 48 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 49 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 50 H 0.10 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -75.70 400.46 2.06 -73.64 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.92 Total: 17.95 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 7.09 Total: -2.76 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -7.98 Total: -136.72 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.70 2.06 -73.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893993345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.949 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds