Wall clock time and date at job start Sat Apr 11 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81398 * 103.00063 * 2 1 4 4 H 1.08994 * 109.47530 * 55.00216 * 3 2 1 5 5 C 1.52999 * 109.46717 * 294.99733 * 3 2 1 6 6 C 1.50703 * 109.46985 * 175.00412 * 3 2 1 7 7 O 1.21280 * 120.00160 * 25.21623 * 6 3 2 8 8 N 1.34773 * 119.99677 * 205.22490 * 6 3 2 9 9 C 1.46921 * 120.63392 * 355.08990 * 8 6 3 10 10 C 1.53192 * 108.77735 * 233.58957 * 9 8 6 11 11 C 1.53042 * 109.31127 * 305.36094 * 10 9 8 12 12 C 1.52999 * 109.46127 * 181.38379 * 11 10 9 13 13 H 1.09007 * 109.50094 * 300.04097 * 12 11 10 14 14 C 1.53044 * 109.52085 * 60.12028 * 12 11 10 15 15 C 1.53046 * 109.53464 * 181.33378 * 14 12 11 16 16 C 1.53192 * 109.31367 * 298.63292 * 15 14 12 17 17 N 1.47205 * 108.85178 * 54.65395 * 16 15 14 18 18 C 1.36936 * 120.81583 * 126.33771 * 17 16 15 19 19 H 1.07999 * 120.00117 * 215.78308 * 18 17 16 20 20 C 1.38813 * 119.99719 * 35.77375 * 18 17 16 21 21 N 1.31617 * 120.00415 * 356.84987 * 20 18 17 22 22 Si 1.86805 * 119.99749 * 176.84623 * 20 18 17 23 23 H 1.48503 * 109.46888 * 90.00343 * 22 20 18 24 24 H 1.48502 * 109.47219 * 210.00215 * 22 20 18 25 25 H 1.48496 * 109.47290 * 330.00448 * 22 20 18 26 26 C 1.46927 * 118.55669 * 306.47485 * 17 16 15 27 27 C 1.53045 * 109.52572 * 61.37243 * 11 10 9 28 28 C 1.46932 * 120.62989 * 175.06973 * 8 6 3 29 29 H 1.09004 * 109.46907 * 59.99776 * 1 2 3 30 30 H 1.08990 * 109.47331 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46788 * 300.00431 * 1 2 3 32 32 H 1.08993 * 109.47571 * 60.00274 * 5 3 2 33 33 H 1.09003 * 109.46735 * 180.02562 * 5 3 2 34 34 H 1.08997 * 109.47489 * 299.99947 * 5 3 2 35 35 H 1.09004 * 109.59009 * 113.80073 * 9 8 6 36 36 H 1.09001 * 109.58493 * 353.37534 * 9 8 6 37 37 H 1.08997 * 109.49801 * 185.41063 * 10 9 8 38 38 H 1.08995 * 109.49836 * 65.31692 * 10 9 8 39 39 H 1.08999 * 109.46549 * 301.36107 * 11 10 9 40 40 H 1.09001 * 109.45946 * 301.35159 * 14 12 11 41 41 H 1.08994 * 109.46036 * 61.32734 * 14 12 11 42 42 H 1.09001 * 109.49891 * 58.59036 * 15 14 12 43 43 H 1.09003 * 109.49139 * 178.68555 * 15 14 12 44 44 H 1.08998 * 109.58526 * 174.42355 * 16 15 14 45 45 H 1.09000 * 109.58639 * 294.71318 * 16 15 14 46 46 H 0.96998 * 120.00093 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.58802 * 293.68406 * 26 17 16 48 48 H 1.09001 * 109.58686 * 173.39358 * 26 17 16 49 49 H 1.09002 * 109.49616 * 58.57709 * 27 11 10 50 50 H 1.09000 * 109.49741 * 178.67014 * 27 11 10 51 51 H 1.09001 * 109.58710 * 246.20237 * 28 8 6 52 52 H 1.09002 * 109.58442 * 6.62131 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4014 -1.3074 6 6 3.7143 1.9385 0.1237 7 8 4.4586 1.0547 -0.2447 8 7 4.2216 3.0736 0.6439 9 6 3.3402 4.1953 0.9953 10 6 3.8534 5.4615 0.3023 11 6 5.3234 5.6786 0.6686 12 6 5.8298 6.9612 0.0059 13 1 5.7337 6.8740 -1.0764 14 6 5.0034 8.1517 0.4978 15 6 5.4879 9.4301 -0.1900 16 6 6.9553 9.6766 0.1745 17 7 7.7375 8.4762 -0.1634 18 6 8.8463 8.5633 -0.9622 19 1 9.0744 7.7695 -1.6580 20 6 9.6772 9.6722 -0.8776 21 7 9.3663 10.6679 -0.0750 22 14 11.2367 9.7510 -1.9028 23 1 10.9371 10.3853 -3.2117 24 1 12.2601 10.5540 -1.1864 25 1 11.7528 8.3765 -2.1255 26 6 7.3011 7.1797 0.3726 27 6 6.1535 4.4897 0.1791 28 6 5.6666 3.2126 0.8709 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.6637 2.2778 -1.3970 33 1 1.9885 3.4634 -1.3076 34 1 2.2355 1.9148 -2.1492 35 1 3.3476 4.3415 2.0755 36 1 2.3252 3.9813 0.6604 37 1 3.2662 6.3192 0.6303 38 1 3.7605 5.3481 -0.7778 39 1 5.4188 5.7669 1.7508 40 1 3.9525 7.9873 0.2598 41 1 5.1198 8.2535 1.5767 42 1 5.3950 9.3196 -1.2704 43 1 4.8836 10.2739 0.1432 44 1 7.3337 10.5290 -0.3898 45 1 7.0374 9.8796 1.2422 46 1 9.9471 11.4425 -0.0156 47 1 7.4117 7.1767 1.4569 48 1 7.9073 6.3832 -0.0589 49 1 6.0387 4.3855 -0.8999 50 1 7.2037 4.6557 0.4193 51 1 5.8637 3.2785 1.9409 52 1 6.1866 2.3501 0.4540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961329462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:33 Heat of formation + Delta-G solvation = -28.968093 kcal Electronic energy + Delta-G solvation = -28657.930892 eV Core-core repulsion = 24976.465354 eV Total energy + Delta-G solvation = -3681.465538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55445 -38.59580 -36.71629 -34.34124 -33.60808 -32.18619 -31.24099 -30.27699 -29.30123 -29.03596 -25.68973 -25.36821 -24.35999 -23.38295 -21.83524 -21.55863 -20.36385 -19.22117 -18.92435 -17.70542 -16.98430 -16.64828 -15.66166 -15.59208 -14.94280 -14.80520 -14.51626 -14.31358 -14.07646 -13.98052 -13.90507 -13.74342 -13.40899 -13.23954 -13.18744 -12.92455 -12.62746 -12.48531 -12.41611 -12.28275 -12.12934 -11.94347 -11.82373 -11.33261 -11.22556 -10.90237 -10.84850 -10.70369 -10.39211 -10.33025 -10.21116 -10.09619 -10.07948 -9.95827 -9.82841 -9.39872 -9.28712 -8.79188 -8.43410 -8.00217 -6.51319 -5.77000 -3.30051 1.09837 2.13398 2.40242 2.79283 3.36952 3.43799 3.45578 4.04950 4.39642 4.46504 4.49261 4.62775 4.71247 4.74766 4.77911 4.83848 4.99699 5.08378 5.16542 5.18415 5.22892 5.33311 5.37878 5.42818 5.52993 5.61105 5.62406 5.66273 5.72054 5.76492 5.84622 5.90530 6.03187 6.06555 6.23151 6.24906 6.37498 6.44021 6.49076 6.52116 6.69055 6.75146 6.89229 6.95459 7.06830 7.14198 7.48813 7.78959 7.83329 7.90550 8.54611 9.26460 9.85879 10.46586 11.29168 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.002282 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.013754 B =12265.652591 C =12918.094073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.192 6.192 3 C -0.093 4.093 4 H 0.107 0.893 5 C -0.144 4.144 6 C 0.536 3.464 7 O -0.523 6.523 8 N -0.604 5.604 9 C 0.103 3.897 10 C -0.130 4.130 11 C -0.079 4.079 12 C -0.097 4.097 13 H 0.064 0.936 14 C -0.103 4.103 15 C -0.144 4.144 16 C 0.166 3.834 17 N -0.594 5.594 18 C -0.252 4.252 19 H 0.062 0.938 20 C 0.008 3.992 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.153 3.847 27 C -0.130 4.130 28 C 0.112 3.888 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.095 0.905 45 H 0.013 0.987 46 H 0.254 0.746 47 H 0.015 0.985 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.951 -14.694 2.948 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.034 5.966 3 C -0.225 4.225 4 H 0.125 0.875 5 C -0.203 4.203 6 C 0.321 3.679 7 O -0.398 6.398 8 N -0.338 5.338 9 C -0.020 4.020 10 C -0.168 4.168 11 C -0.098 4.098 12 C -0.117 4.117 13 H 0.082 0.918 14 C -0.140 4.140 15 C -0.184 4.184 16 C 0.041 3.959 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.080 0.920 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.027 3.973 27 C -0.168 4.168 28 C -0.009 4.009 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.113 0.887 45 H 0.031 0.969 46 H 0.064 0.936 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.103 0.897 51 H 0.087 0.913 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.740 -15.885 2.789 24.725 hybrid contribution -0.169 1.357 -0.405 1.427 sum -18.909 -14.528 2.384 23.965 Atomic orbital electron populations 1.23546 0.95583 1.06688 1.04933 1.87446 1.04977 1.06342 1.97852 1.23374 0.97594 0.98069 1.03438 0.87488 1.22039 1.01849 1.01428 0.95031 1.19599 0.88686 0.82145 0.77440 1.90736 1.60131 1.41101 1.47852 1.48042 1.08491 1.14487 1.62755 1.21903 0.93421 0.86440 1.00231 1.22041 0.97510 0.96383 1.00901 1.21145 0.93305 0.94963 1.00364 1.21681 0.98198 0.92211 0.99645 0.91768 1.21479 0.97326 0.95592 0.99620 1.22221 1.00691 0.95743 0.99708 1.20961 0.85719 0.91577 0.97658 1.44034 1.29068 1.01537 1.56989 1.19125 0.99603 1.05595 1.13819 0.92042 1.25323 0.97728 0.98034 0.97980 1.69907 1.37485 1.07714 1.39784 0.86306 0.83544 0.77649 0.79363 1.21453 1.21563 1.20386 1.20962 0.91256 0.89518 0.95608 1.22023 1.00772 0.93283 1.00739 1.21722 0.79165 0.99654 1.00396 0.90316 0.87780 0.90547 0.91256 0.90859 0.90427 0.91028 0.90133 0.90135 0.91548 0.91206 0.93800 0.93027 0.93100 0.93674 0.88742 0.96857 0.93593 0.96760 0.92940 0.91544 0.89729 0.91290 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 10.45 101.05 1.06 0.27 16 2 S -0.19 -1.93 21.10 -107.50 -2.27 -4.20 16 3 C -0.09 -0.83 2.32 -27.88 -0.06 -0.90 16 4 H 0.11 0.74 6.73 -51.93 -0.35 0.39 16 5 C -0.14 -1.07 8.84 37.16 0.33 -0.74 16 6 C 0.54 6.54 6.81 -10.99 -0.07 6.47 16 7 O -0.52 -8.46 15.56 5.56 0.09 -8.37 16 8 N -0.60 -6.49 2.97 -172.77 -0.51 -7.00 16 9 C 0.10 0.84 5.96 -3.71 -0.02 0.82 16 10 C -0.13 -1.27 5.05 -26.61 -0.13 -1.40 16 11 C -0.08 -0.96 1.74 -90.58 -0.16 -1.11 16 12 C -0.10 -1.55 1.92 -90.50 -0.17 -1.72 16 13 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.10 -1.62 4.86 -26.68 -0.13 -1.75 16 15 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 16 C 0.17 3.96 5.27 -3.56 -0.02 3.94 16 17 N -0.59 -14.74 3.01 -172.09 -0.52 -15.25 16 18 C -0.25 -6.88 9.55 -15.06 -0.14 -7.02 16 19 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 20 C 0.01 0.22 5.31 -17.43 -0.09 0.13 16 21 N -0.90 -26.06 10.70 55.49 0.59 -25.47 16 22 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.15 3.08 5.27 -3.71 -0.02 3.06 16 27 C -0.13 -1.60 5.05 -26.61 -0.13 -1.74 16 28 C 0.11 1.29 6.44 -3.71 -0.02 1.27 16 29 H 0.08 0.37 7.14 -51.92 -0.37 0.00 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.07 0.38 6.92 -51.93 -0.36 0.02 16 33 H 0.07 0.50 7.11 -51.93 -0.37 0.13 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.50 4.82 -51.93 -0.25 0.25 16 37 H 0.08 0.73 6.34 -51.93 -0.33 0.40 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.58 6.34 -51.93 -0.33 0.26 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 2.55 6.00 -51.93 -0.31 2.24 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.05 1.05 6.51 -51.93 -0.34 0.71 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.08 1.10 6.49 -51.93 -0.34 0.76 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -31.86 396.63 -10.80 -42.66 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -9.17 Total: -1.68 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 0.03 Total: -3.30 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.44 Total: -47.73 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.27 Total: -4.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.86 -10.80 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961329462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.695 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds