Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81398 * 103.00063 * 2 1 4 4 H 1.08994 * 109.47530 * 55.00216 * 3 2 1 5 5 C 1.52999 * 109.46717 * 294.99733 * 3 2 1 6 6 C 1.50703 * 109.46985 * 175.00412 * 3 2 1 7 7 O 1.21280 * 120.00160 * 25.21623 * 6 3 2 8 8 N 1.34773 * 119.99677 * 205.22490 * 6 3 2 9 9 C 1.46921 * 120.63392 * 355.08990 * 8 6 3 10 10 C 1.53192 * 108.77735 * 233.58957 * 9 8 6 11 11 C 1.53042 * 109.31127 * 305.36094 * 10 9 8 12 12 C 1.52999 * 109.46127 * 181.38379 * 11 10 9 13 13 H 1.09007 * 109.50094 * 300.04097 * 12 11 10 14 14 C 1.53044 * 109.52085 * 60.12028 * 12 11 10 15 15 C 1.53046 * 109.53464 * 181.33378 * 14 12 11 16 16 C 1.53192 * 109.31367 * 298.63292 * 15 14 12 17 17 N 1.47205 * 108.85178 * 54.65395 * 16 15 14 18 18 C 1.36936 * 120.81583 * 126.33771 * 17 16 15 19 19 H 1.07999 * 120.00117 * 215.78308 * 18 17 16 20 20 C 1.38813 * 119.99719 * 35.77375 * 18 17 16 21 21 N 1.31617 * 120.00415 * 356.84987 * 20 18 17 22 22 Si 1.86805 * 119.99749 * 176.84623 * 20 18 17 23 23 H 1.48503 * 109.46888 * 90.00343 * 22 20 18 24 24 H 1.48502 * 109.47219 * 210.00215 * 22 20 18 25 25 H 1.48496 * 109.47290 * 330.00448 * 22 20 18 26 26 C 1.46927 * 118.55669 * 306.47485 * 17 16 15 27 27 C 1.53045 * 109.52572 * 61.37243 * 11 10 9 28 28 C 1.46932 * 120.62989 * 175.06973 * 8 6 3 29 29 H 1.09004 * 109.46907 * 59.99776 * 1 2 3 30 30 H 1.08990 * 109.47331 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46788 * 300.00431 * 1 2 3 32 32 H 1.08993 * 109.47571 * 60.00274 * 5 3 2 33 33 H 1.09003 * 109.46735 * 180.02562 * 5 3 2 34 34 H 1.08997 * 109.47489 * 299.99947 * 5 3 2 35 35 H 1.09004 * 109.59009 * 113.80073 * 9 8 6 36 36 H 1.09001 * 109.58493 * 353.37534 * 9 8 6 37 37 H 1.08997 * 109.49801 * 185.41063 * 10 9 8 38 38 H 1.08995 * 109.49836 * 65.31692 * 10 9 8 39 39 H 1.08999 * 109.46549 * 301.36107 * 11 10 9 40 40 H 1.09001 * 109.45946 * 301.35159 * 14 12 11 41 41 H 1.08994 * 109.46036 * 61.32734 * 14 12 11 42 42 H 1.09001 * 109.49891 * 58.59036 * 15 14 12 43 43 H 1.09003 * 109.49139 * 178.68555 * 15 14 12 44 44 H 1.08998 * 109.58526 * 174.42355 * 16 15 14 45 45 H 1.09000 * 109.58639 * 294.71318 * 16 15 14 46 46 H 0.96998 * 120.00093 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.58802 * 293.68406 * 26 17 16 48 48 H 1.09001 * 109.58686 * 173.39358 * 26 17 16 49 49 H 1.09002 * 109.49616 * 58.57709 * 27 11 10 50 50 H 1.09000 * 109.49741 * 178.67014 * 27 11 10 51 51 H 1.09001 * 109.58710 * 246.20237 * 28 8 6 52 52 H 1.09002 * 109.58442 * 6.62131 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4014 -1.3074 6 6 3.7143 1.9385 0.1237 7 8 4.4586 1.0547 -0.2447 8 7 4.2216 3.0736 0.6439 9 6 3.3402 4.1953 0.9953 10 6 3.8534 5.4615 0.3023 11 6 5.3234 5.6786 0.6686 12 6 5.8298 6.9612 0.0059 13 1 5.7337 6.8740 -1.0764 14 6 5.0034 8.1517 0.4978 15 6 5.4879 9.4301 -0.1900 16 6 6.9553 9.6766 0.1745 17 7 7.7375 8.4762 -0.1634 18 6 8.8463 8.5633 -0.9622 19 1 9.0744 7.7695 -1.6580 20 6 9.6772 9.6722 -0.8776 21 7 9.3663 10.6679 -0.0750 22 14 11.2367 9.7510 -1.9028 23 1 10.9371 10.3853 -3.2117 24 1 12.2601 10.5540 -1.1864 25 1 11.7528 8.3765 -2.1255 26 6 7.3011 7.1797 0.3726 27 6 6.1535 4.4897 0.1791 28 6 5.6666 3.2126 0.8709 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.6637 2.2778 -1.3970 33 1 1.9885 3.4634 -1.3076 34 1 2.2355 1.9148 -2.1492 35 1 3.3476 4.3415 2.0755 36 1 2.3252 3.9813 0.6604 37 1 3.2662 6.3192 0.6303 38 1 3.7605 5.3481 -0.7778 39 1 5.4188 5.7669 1.7508 40 1 3.9525 7.9873 0.2598 41 1 5.1198 8.2535 1.5767 42 1 5.3950 9.3196 -1.2704 43 1 4.8836 10.2739 0.1432 44 1 7.3337 10.5290 -0.3898 45 1 7.0374 9.8796 1.2422 46 1 9.9471 11.4425 -0.0156 47 1 7.4117 7.1767 1.4569 48 1 7.9073 6.3832 -0.0589 49 1 6.0387 4.3855 -0.8999 50 1 7.2037 4.6557 0.4193 51 1 5.8637 3.2785 1.9409 52 1 6.1866 2.3501 0.4540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961329462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -46.503600 kcal Electronic energy + Delta-G solvation = -28658.691289 eV Core-core repulsion = 24976.465354 eV Total energy + Delta-G solvation = -3682.225935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46575 -39.85501 -38.01923 -35.62763 -34.67089 -33.58784 -32.46779 -31.71386 -30.54829 -29.59485 -27.24252 -26.63095 -25.27548 -24.52519 -23.07211 -23.04584 -21.53715 -20.57587 -19.98191 -18.73769 -18.40994 -17.76459 -16.90256 -16.48856 -16.45436 -15.84876 -15.61370 -15.39264 -15.11253 -15.08037 -14.89357 -14.77721 -14.55169 -14.35230 -14.14217 -14.09793 -13.77708 -13.69135 -13.42158 -13.24664 -13.05308 -12.94699 -12.91302 -12.77912 -12.64887 -12.44661 -12.21646 -12.16096 -11.98919 -11.73322 -11.71988 -11.46183 -11.33986 -11.00585 -10.89010 -10.78739 -10.67091 -10.52545 -9.68756 -8.72697 -8.51593 -7.86081 -5.42433 0.45421 1.43703 1.44915 1.47170 1.54140 1.65377 1.97797 2.48081 3.27749 3.31750 3.64905 3.75108 3.80354 3.83704 3.93815 3.97287 4.14049 4.24284 4.29801 4.36185 4.38320 4.39912 4.46874 4.51861 4.57352 4.59669 4.62316 4.66209 4.77087 4.81671 4.91234 4.92809 4.94266 4.99759 5.03479 5.11415 5.12002 5.15586 5.18827 5.24811 5.38201 5.43171 5.45216 5.57057 5.60572 5.64130 5.74540 5.88836 6.30951 6.46345 7.03246 7.18752 7.88437 8.42056 9.16906 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.002282 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.013754 B =12265.652591 C =12918.094073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.274 6.274 3 C -0.076 4.076 4 H 0.137 0.863 5 C -0.141 4.141 6 C 0.527 3.473 7 O -0.573 6.573 8 N -0.602 5.602 9 C 0.102 3.898 10 C -0.124 4.124 11 C -0.070 4.070 12 C -0.084 4.084 13 H 0.049 0.951 14 C -0.096 4.096 15 C -0.135 4.135 16 C 0.170 3.830 17 N -0.615 5.615 18 C -0.263 4.263 19 H 0.059 0.941 20 C -0.046 4.046 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.271 1.271 26 C 0.150 3.850 27 C -0.124 4.124 28 C 0.117 3.883 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.056 0.944 45 H -0.008 1.008 46 H 0.250 0.750 47 H 0.010 0.990 48 H 0.045 0.955 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.350 -14.999 3.515 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.049 6.049 3 C -0.207 4.207 4 H 0.154 0.846 5 C -0.200 4.200 6 C 0.314 3.686 7 O -0.453 6.453 8 N -0.334 5.334 9 C -0.020 4.020 10 C -0.162 4.162 11 C -0.089 4.089 12 C -0.104 4.104 13 H 0.067 0.933 14 C -0.133 4.133 15 C -0.174 4.174 16 C 0.045 3.955 17 N -0.338 5.338 18 C -0.393 4.393 19 H 0.076 0.924 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.793 3.207 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.196 1.196 26 C 0.025 3.975 27 C -0.162 4.162 28 C -0.006 4.006 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.010 0.990 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.102 0.898 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.175 -16.189 3.365 27.662 hybrid contribution 0.903 1.444 -0.574 1.797 sum -21.272 -14.746 2.791 26.033 Atomic orbital electron populations 1.23576 0.90874 1.07712 1.06447 1.87769 1.10229 1.08850 1.98086 1.23322 0.95085 0.96924 1.05358 0.84552 1.22047 1.03198 1.01513 0.93224 1.20251 0.90079 0.81718 0.76503 1.90712 1.61648 1.42901 1.50010 1.48154 1.08336 1.14994 1.61948 1.22140 0.94044 0.84450 1.01341 1.22000 0.95338 0.98009 1.00886 1.21055 0.95139 0.92342 1.00349 1.21476 0.95202 0.94626 0.99064 0.93253 1.21457 0.99262 0.93236 0.99349 1.22059 0.97248 0.98547 0.99566 1.20761 0.88855 0.90298 0.95585 1.44314 1.29093 1.03312 1.57123 1.19398 1.00469 1.05354 1.14100 0.92383 1.26046 1.00564 0.97929 0.99624 1.70095 1.38231 1.08048 1.41466 0.85310 0.79841 0.77702 0.77838 1.21033 1.21776 1.19624 1.21112 0.94212 0.87196 0.94970 1.21919 1.00266 0.94170 0.99867 1.21578 0.80028 0.98087 1.00881 0.88888 0.87051 0.88801 0.88650 0.89692 0.92683 0.89092 0.87256 0.88107 0.92059 0.90284 0.89729 0.92615 0.93915 0.91586 0.92558 0.99018 0.94078 0.97175 0.93685 0.93092 0.91130 0.89794 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.45 113.37 1.19 0.22 16 2 S -0.27 -5.23 21.10 -56.49 -1.19 -6.42 16 3 C -0.08 -1.16 2.32 29.85 0.07 -1.09 16 4 H 0.14 1.25 6.73 -2.39 -0.02 1.24 16 5 C -0.14 -1.66 8.84 71.98 0.64 -1.02 16 6 C 0.53 12.28 6.81 87.66 0.60 12.87 16 7 O -0.57 -19.04 15.56 -3.03 -0.05 -19.09 16 8 N -0.60 -11.65 2.97 -818.91 -2.43 -14.08 16 9 C 0.10 1.21 5.96 86.36 0.51 1.72 16 10 C -0.12 -1.88 5.05 30.67 0.15 -1.73 16 11 C -0.07 -1.53 1.74 -10.76 -0.02 -1.54 16 12 C -0.08 -2.54 1.92 -10.71 -0.02 -2.56 16 13 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 14 C -0.10 -2.73 4.86 30.62 0.15 -2.58 16 15 C -0.14 -4.93 6.08 30.67 0.19 -4.74 16 16 C 0.17 8.31 5.27 86.31 0.45 8.76 16 17 N -0.61 -31.26 3.01 -698.38 -2.10 -33.36 16 18 C -0.26 -14.76 9.55 84.03 0.80 -13.95 16 19 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 20 C -0.05 -2.62 5.31 84.86 0.45 -2.17 16 21 N -0.93 -55.56 10.70 21.65 0.23 -55.33 16 22 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 C 0.15 6.11 5.27 86.36 0.45 6.56 16 27 C -0.12 -2.99 5.05 30.67 0.15 -2.84 16 28 C 0.12 2.59 6.44 86.36 0.56 3.15 16 29 H 0.09 0.52 7.14 -2.39 -0.02 0.50 16 30 H 0.11 0.77 8.14 -2.40 -0.02 0.75 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.63 6.92 -2.39 -0.02 0.62 16 33 H 0.08 0.81 7.11 -2.39 -0.02 0.80 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 0.72 4.82 -2.39 -0.01 0.71 16 37 H 0.10 1.20 6.34 -2.39 -0.02 1.19 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.80 6.34 -2.39 -0.02 1.79 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 3.16 6.00 -2.39 -0.01 3.15 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.04 1.85 6.51 -2.39 -0.02 1.84 16 49 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 1.88 6.49 -2.39 -0.02 1.86 16 51 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.07 1.88 7.00 -2.39 -0.02 1.87 16 Total: -1.00 -74.65 396.63 3.70 -70.95 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.88 Total: 10.68 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 6.33 Total: -0.93 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -4.30 Total: -102.77 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.19 Total: -6.42 kcal Total: -74.65 3.70 -70.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961329462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.444 kcal (2) G-P(sol) polarization free energy of solvation -74.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds