Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81391 * 102.99981 * 2 1 4 4 H 1.09000 * 109.47343 * 304.99978 * 3 2 1 5 5 C 1.53005 * 109.47253 * 64.99734 * 3 2 1 6 6 C 1.50703 * 109.47270 * 184.99522 * 3 2 1 7 7 O 1.21274 * 119.99808 * 340.00338 * 6 3 2 8 8 N 1.34781 * 119.99953 * 159.99804 * 6 3 2 9 9 C 1.46926 * 120.63013 * 359.72441 * 8 6 3 10 10 C 1.53195 * 108.77605 * 233.88420 * 9 8 6 11 11 C 1.53045 * 109.30836 * 305.36756 * 10 9 8 12 12 C 1.53039 * 109.54155 * 61.36220 * 11 10 9 13 13 H 1.09010 * 109.49382 * 58.58669 * 12 11 10 14 14 C 1.52996 * 109.49645 * 178.68171 * 12 11 10 15 15 C 1.53039 * 109.46562 * 299.86801 * 14 12 11 16 16 C 1.53184 * 109.31653 * 178.60233 * 15 14 12 17 17 N 1.46931 * 108.76364 * 54.65561 * 16 15 14 18 18 C 1.36940 * 120.62610 * 126.36315 * 17 16 15 19 19 H 1.08002 * 119.99408 * 207.69363 * 18 17 16 20 20 C 1.38809 * 120.00288 * 27.70174 * 18 17 16 21 21 N 1.31619 * 120.00180 * 17.34594 * 20 18 17 22 22 Si 1.86804 * 119.99851 * 197.34873 * 20 18 17 23 23 H 1.48500 * 109.47081 * 59.99835 * 22 20 18 24 24 H 1.48492 * 109.47036 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47241 * 299.99742 * 22 20 18 26 26 C 1.46924 * 118.74070 * 306.38044 * 17 16 15 27 27 C 1.53047 * 109.45774 * 179.81449 * 14 12 11 28 28 C 1.46918 * 120.62722 * 180.02562 * 8 6 3 29 29 H 1.09002 * 109.46893 * 60.00178 * 1 2 3 30 30 H 1.09007 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47206 * 299.99994 * 1 2 3 32 32 H 1.09002 * 109.47149 * 300.00138 * 5 3 2 33 33 H 1.09000 * 109.46746 * 59.99879 * 5 3 2 34 34 H 1.09003 * 109.47471 * 180.02562 * 5 3 2 35 35 H 1.09007 * 109.58669 * 353.66725 * 9 8 6 36 36 H 1.08994 * 109.58415 * 114.09633 * 9 8 6 37 37 H 1.08991 * 109.49981 * 185.41644 * 10 9 8 38 38 H 1.08998 * 109.52625 * 65.32858 * 10 9 8 39 39 H 1.09007 * 109.45588 * 301.34375 * 11 10 9 40 40 H 1.08997 * 109.44807 * 181.38218 * 11 10 9 41 41 H 1.08994 * 109.46420 * 59.84559 * 14 12 11 42 42 H 1.09004 * 109.49345 * 298.57185 * 15 14 12 43 43 H 1.09002 * 109.49636 * 58.65643 * 15 14 12 44 44 H 1.09003 * 109.60122 * 294.86954 * 16 15 14 45 45 H 1.09000 * 109.58725 * 174.43166 * 16 15 14 46 46 H 0.96998 * 119.99694 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.58832 * 293.82594 * 26 17 16 48 48 H 1.08994 * 109.58656 * 173.39581 * 26 17 16 49 49 H 1.08999 * 109.49600 * 301.33988 * 27 14 12 50 50 H 1.08992 * 109.49810 * 61.40346 * 27 14 12 51 51 H 1.08997 * 109.59119 * 245.90117 * 28 8 6 52 52 H 1.09000 * 109.58875 * 6.18844 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7427 2.4016 1.3074 6 6 3.7142 1.9385 -0.1237 7 8 4.4551 1.0199 0.1557 8 7 4.2253 3.1124 -0.5449 9 6 3.3403 4.2324 -0.8929 10 6 3.6814 4.7090 -2.3083 11 6 5.1737 5.0398 -2.3850 12 6 5.9928 3.7815 -2.0885 13 1 5.7357 3.0025 -2.8064 14 6 7.4841 4.1055 -2.1976 15 6 7.7977 4.5928 -3.6141 16 6 9.2845 4.9492 -3.7097 17 7 10.0773 3.7886 -3.2817 18 6 11.0603 3.2796 -4.0879 19 1 11.3256 2.2348 -4.0219 20 6 11.7158 4.1066 -4.9897 21 7 11.6537 5.4138 -4.8491 22 14 12.6859 3.3642 -6.4029 23 1 11.7786 2.5530 -7.2539 24 1 13.2861 4.4518 -7.2165 25 1 13.7637 2.4975 -5.8621 26 6 9.7951 3.1842 -1.9726 27 6 8.3024 2.8478 -1.8964 28 6 5.6777 3.2941 -0.6711 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.6635 2.2778 1.3969 33 1 2.2353 1.9149 2.1492 34 1 1.9875 3.4637 1.3072 35 1 2.3021 3.9019 -0.8590 36 1 3.4893 5.0489 -0.1865 37 1 3.0988 5.5999 -2.5424 38 1 3.4461 3.9218 -3.0245 39 1 5.4130 5.8100 -1.6517 40 1 5.4141 5.4026 -3.3843 41 1 7.7397 4.8854 -1.4804 42 1 7.5657 3.8040 -4.3298 43 1 7.1972 5.4748 -3.8367 44 1 9.4995 5.7980 -3.0604 45 1 9.5340 5.2022 -4.7401 46 1 12.1115 5.9916 -5.4795 47 1 10.0516 3.8890 -1.1817 48 1 10.3814 2.2727 -1.8569 49 1 8.0612 2.4877 -0.8963 50 1 8.0652 2.0755 -2.6281 51 1 6.0178 4.0341 0.0534 52 1 6.1820 2.3452 -0.4884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047225572.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -26.736142 kcal Electronic energy + Delta-G solvation = -28716.096576 eV Core-core repulsion = 25034.727822 eV Total energy + Delta-G solvation = -3681.368754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.58569 -38.51590 -36.81132 -34.50622 -33.38570 -32.43100 -31.30904 -29.98298 -29.24252 -28.91025 -26.16680 -25.34525 -24.33410 -23.27721 -22.01647 -21.38047 -20.13056 -19.43430 -18.97077 -17.69331 -16.96021 -16.67917 -15.77695 -15.46438 -14.87036 -14.68676 -14.54537 -14.46667 -14.16960 -13.95493 -13.84898 -13.67811 -13.44094 -13.29490 -13.15013 -12.99477 -12.77533 -12.61669 -12.41990 -12.21246 -12.17849 -11.99191 -11.54007 -11.36144 -11.20025 -10.94916 -10.82035 -10.64604 -10.55743 -10.29463 -10.17402 -10.14558 -10.09515 -9.91677 -9.80401 -9.35709 -9.29722 -8.75116 -8.40729 -7.97439 -6.60184 -5.73494 -3.14666 1.12244 2.16491 2.41936 2.77594 3.41890 3.46980 3.49100 4.04593 4.34160 4.42583 4.54627 4.59303 4.71235 4.71996 4.75525 4.78118 4.93780 5.02025 5.09950 5.14155 5.18904 5.32907 5.39317 5.40569 5.47906 5.56617 5.57764 5.60901 5.69793 5.77449 5.85871 5.91841 6.00111 6.07722 6.13686 6.26670 6.32146 6.42371 6.45181 6.62615 6.71758 6.78787 6.89170 6.94883 7.09070 7.15379 7.44689 7.71586 7.84767 7.93336 8.51212 9.27718 9.91732 10.48642 11.34913 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.002351 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.620004 B =11907.027371 C =12435.557632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.186 6.186 3 C -0.095 4.095 4 H 0.108 0.892 5 C -0.143 4.143 6 C 0.534 3.466 7 O -0.518 6.518 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.136 4.136 11 C -0.117 4.117 12 C -0.095 4.095 13 H 0.071 0.929 14 C -0.069 4.069 15 C -0.134 4.134 16 C 0.171 3.829 17 N -0.593 5.593 18 C -0.249 4.249 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.146 3.854 27 C -0.130 4.130 28 C 0.116 3.884 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.015 0.985 45 H 0.085 0.915 46 H 0.253 0.747 47 H 0.015 0.985 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.057 0.943 51 H 0.067 0.933 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.947 -1.128 10.281 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.040 5.960 3 C -0.227 4.227 4 H 0.126 0.874 5 C -0.202 4.202 6 C 0.319 3.681 7 O -0.393 6.393 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.174 4.174 11 C -0.155 4.155 12 C -0.114 4.114 13 H 0.090 0.910 14 C -0.088 4.088 15 C -0.173 4.173 16 C 0.045 3.955 17 N -0.315 5.315 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.019 3.981 27 C -0.169 4.169 28 C -0.005 4.005 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.766 -2.384 10.334 26.942 hybrid contribution -0.466 0.896 -0.872 1.334 sum -25.232 -1.489 9.462 26.989 Atomic orbital electron populations 1.23556 0.95874 1.06704 1.04809 1.87566 1.04599 1.06053 1.97828 1.23391 0.97707 0.98324 1.03288 0.87410 1.22024 1.01854 1.01202 0.95118 1.19597 0.88636 0.82411 0.77421 1.90755 1.60273 1.39474 1.48772 1.48052 1.07917 1.12259 1.65613 1.21864 0.93747 0.89262 0.97074 1.21947 0.97904 1.01518 0.96038 1.21645 0.93209 0.97747 1.02873 1.21594 0.96446 0.97492 0.95861 0.91049 1.21010 0.91274 0.97930 0.98583 1.22260 1.00573 0.99525 0.94943 1.20765 0.85328 0.88249 1.01135 1.44056 1.38323 1.34555 1.14616 1.19161 1.11646 0.92564 1.14500 0.91837 1.25014 0.98351 0.95262 1.01175 1.70030 1.46032 1.02018 1.36851 0.86386 0.79817 0.78039 0.82653 1.21105 1.21688 1.20911 1.20891 0.92327 0.96409 0.88440 1.22111 0.98105 0.96951 0.99747 1.21841 0.78422 1.03054 0.97214 0.90582 0.87767 0.90424 0.91289 0.90487 0.91086 0.90162 0.90961 0.90710 0.91498 0.91784 0.90706 0.91877 0.92891 0.93243 0.96668 0.89635 0.93701 0.96667 0.93003 0.93123 0.92421 0.91423 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 10.45 101.05 1.06 0.23 16 2 S -0.19 -1.95 21.04 -107.50 -2.26 -4.22 16 3 C -0.10 -0.86 2.33 -27.88 -0.06 -0.92 16 4 H 0.11 0.75 6.53 -51.92 -0.34 0.41 16 5 C -0.14 -0.94 8.88 37.16 0.33 -0.61 16 6 C 0.53 6.70 6.87 -10.98 -0.08 6.62 16 7 O -0.52 -8.74 15.46 5.56 0.09 -8.66 16 8 N -0.60 -6.63 2.97 -172.80 -0.51 -7.14 16 9 C 0.10 0.78 5.63 -3.71 -0.02 0.76 16 10 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 11 C -0.12 -1.25 4.86 -26.69 -0.13 -1.38 16 12 C -0.09 -1.23 1.92 -90.52 -0.17 -1.41 16 13 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 14 C -0.07 -1.11 1.74 -90.58 -0.16 -1.26 16 15 C -0.13 -2.48 5.05 -26.62 -0.13 -2.62 16 16 C 0.17 4.08 5.31 -3.71 -0.02 4.06 16 17 N -0.59 -15.12 2.99 -172.32 -0.52 -15.64 16 18 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 19 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 20 C 0.00 0.00 4.91 -17.43 -0.09 -0.08 16 21 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 22 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 27 C -0.13 -2.32 5.05 -26.60 -0.13 -2.45 16 28 C 0.12 1.47 5.18 -3.73 -0.02 1.45 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.35 7.14 -51.93 -0.37 -0.02 16 32 H 0.07 0.32 6.92 -51.93 -0.36 -0.03 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.38 7.16 -51.93 -0.37 0.01 16 35 H 0.08 0.44 5.13 -51.92 -0.27 0.17 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.85 6.33 -51.93 -0.33 0.52 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.81 6.34 -51.93 -0.33 0.48 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 2.30 6.04 -51.93 -0.31 1.98 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.12 7.93 -51.93 -0.41 0.70 16 49 H 0.05 0.81 6.49 -51.93 -0.34 0.47 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.10 1.45 5.59 -51.93 -0.29 1.16 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -32.78 396.71 -10.78 -43.56 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -9.19 Total: -2.13 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.41 Total: -48.70 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.26 Total: -4.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.78 -10.78 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047225572.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.823 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds