Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81404 * 102.99821 * 2 1 4 4 H 1.08994 * 109.46994 * 55.00367 * 3 2 1 5 5 C 1.52996 * 109.47477 * 295.00154 * 3 2 1 6 6 C 1.50693 * 109.46958 * 175.00264 * 3 2 1 7 7 O 1.21283 * 120.00294 * 20.56160 * 6 3 2 8 8 N 1.34782 * 120.00295 * 200.56240 * 6 3 2 9 9 C 1.46924 * 120.63226 * 185.18075 * 8 6 3 10 10 C 1.53188 * 108.77593 * 126.41601 * 9 8 6 11 11 C 1.53039 * 109.31684 * 54.63127 * 10 9 8 12 12 C 1.53042 * 109.53530 * 298.63863 * 11 10 9 13 13 H 1.08998 * 109.49488 * 301.40728 * 12 11 10 14 14 C 1.53004 * 109.49380 * 181.34878 * 12 11 10 15 15 C 1.53042 * 109.45564 * 180.08924 * 14 12 11 16 16 C 1.53197 * 109.30847 * 178.59842 * 15 14 12 17 17 N 1.46924 * 108.76622 * 54.65981 * 16 15 14 18 18 C 1.36936 * 120.63253 * 126.40194 * 17 16 15 19 19 H 1.08005 * 120.00006 * 211.37437 * 18 17 16 20 20 C 1.38808 * 120.00105 * 31.37672 * 18 17 16 21 21 N 1.31624 * 119.99947 * 10.60010 * 20 18 17 22 22 Si 1.86799 * 120.00169 * 190.60534 * 20 18 17 23 23 H 1.48492 * 109.47226 * 59.99816 * 22 20 18 24 24 H 1.48500 * 109.46982 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47173 * 299.99732 * 22 20 18 26 26 C 1.46931 * 118.73667 * 306.38319 * 17 16 15 27 27 C 1.53036 * 109.46205 * 60.03964 * 14 12 11 28 28 C 1.46999 * 120.60799 * 5.19990 * 8 6 3 29 29 H 1.09006 * 109.46646 * 300.00009 * 1 2 3 30 30 H 1.08996 * 109.47482 * 59.99802 * 1 2 3 31 31 H 1.08999 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47452 * 300.00397 * 5 3 2 33 33 H 1.09010 * 109.47093 * 59.99911 * 5 3 2 34 34 H 1.08997 * 109.47539 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.58778 * 6.62048 * 9 8 6 36 36 H 1.09007 * 109.70314 * 246.26749 * 9 8 6 37 37 H 1.09003 * 109.49573 * 294.67686 * 10 9 8 38 38 H 1.09002 * 109.50180 * 174.58545 * 10 9 8 39 39 H 1.09000 * 109.46062 * 178.61426 * 11 10 9 40 40 H 1.09002 * 109.45682 * 58.65730 * 11 10 9 41 41 H 1.09002 * 109.45885 * 300.06108 * 14 12 11 42 42 H 1.08996 * 109.50406 * 298.56189 * 15 14 12 43 43 H 1.09003 * 109.49518 * 58.66655 * 15 14 12 44 44 H 1.09002 * 109.60037 * 294.86741 * 16 15 14 45 45 H 1.09002 * 109.58415 * 174.44023 * 16 15 14 46 46 H 0.97000 * 119.99979 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.58287 * 293.81701 * 26 17 16 48 48 H 1.08996 * 109.58907 * 173.39732 * 26 17 16 49 49 H 1.09003 * 109.49246 * 301.33322 * 27 14 12 50 50 H 1.09002 * 109.50311 * 61.43029 * 27 14 12 51 51 H 1.09003 * 109.57877 * 113.81069 * 28 8 6 52 52 H 1.08990 * 109.63357 * 353.35806 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4017 -1.3073 6 6 3.7141 1.9386 0.1238 7 8 4.4555 1.0234 -0.1654 8 7 4.2248 3.1087 0.5558 9 6 5.6771 3.3303 0.5745 10 6 5.9891 4.6197 -0.1915 11 6 5.1702 5.7699 0.3987 12 6 3.6779 5.4665 0.2464 13 1 3.4405 5.3293 -0.8086 14 6 2.8601 6.6322 0.8063 15 6 1.3681 6.3269 0.6556 16 6 0.5526 7.4802 1.2488 17 7 0.9785 8.7353 0.6149 18 6 0.0621 9.5668 0.0284 19 1 0.3451 10.1667 -0.8240 20 6 -1.2304 9.6386 0.5292 21 7 -1.5214 9.0756 1.6829 22 14 -2.5570 10.5341 -0.4340 23 1 -2.7223 9.8924 -1.7628 24 1 -3.8397 10.4680 0.3113 25 1 -2.1633 11.9544 -0.6157 26 6 2.4064 9.0816 0.6227 27 6 3.2010 7.9103 0.0368 28 6 3.3389 4.1871 1.0175 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2353 1.9151 -2.1492 33 1 0.6634 2.2779 -1.3968 34 1 1.9883 3.4636 -1.3075 35 1 6.1811 2.4902 0.0966 36 1 6.0212 3.4248 1.6045 37 1 5.7299 4.4903 -1.2424 38 1 7.0515 4.8470 -0.1038 39 1 5.4088 6.6935 -0.1286 40 1 5.4118 5.8826 1.4556 41 1 3.0981 6.7689 1.8612 42 1 1.1245 6.2147 -0.4009 43 1 1.1304 5.4038 1.1843 44 1 0.7266 7.5361 2.3234 45 1 -0.5075 7.3149 1.0564 46 1 -2.4246 9.1261 2.0331 47 1 2.7315 9.2682 1.6463 48 1 2.5695 9.9731 0.0171 49 1 4.2681 8.1143 0.1251 50 1 2.9401 7.7830 -1.0138 51 1 3.4901 4.3525 2.0843 52 1 2.3005 3.9127 0.8318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047225573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -29.374042 kcal Electronic energy + Delta-G solvation = -29250.311863 eV Core-core repulsion = 25568.828722 eV Total energy + Delta-G solvation = -3681.483142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58726 -38.58830 -36.76668 -34.11628 -33.91280 -32.18307 -31.46889 -29.92334 -29.13011 -28.96437 -26.09059 -25.32194 -24.45301 -23.14689 -22.17590 -21.34756 -20.27911 -19.34931 -18.99153 -17.63497 -16.93836 -16.69544 -15.61966 -15.52595 -14.94206 -14.68909 -14.59417 -14.27653 -14.10361 -13.94286 -13.78255 -13.63650 -13.49038 -13.31491 -13.09917 -12.95503 -12.84949 -12.47096 -12.38257 -12.17133 -12.06227 -11.87638 -11.53717 -11.46933 -11.11640 -11.04376 -10.90607 -10.74365 -10.65036 -10.41900 -10.20336 -10.18568 -10.05713 -9.93663 -9.87147 -9.48479 -9.35776 -8.75716 -8.50306 -7.85256 -6.62854 -5.80961 -3.28567 1.26666 2.27854 2.44812 2.83873 3.34901 3.40499 3.41329 4.14616 4.46075 4.53692 4.58837 4.71733 4.76497 4.80697 4.87767 4.92478 4.94441 5.13877 5.21628 5.29263 5.33765 5.37636 5.39820 5.42383 5.53090 5.55824 5.60311 5.62635 5.68456 5.73661 5.83860 5.87976 5.91341 6.02972 6.05867 6.16510 6.27495 6.30826 6.36374 6.52326 6.57102 6.68689 6.78467 6.83353 6.99172 7.16490 7.36152 7.66052 7.75947 7.94227 8.45843 9.20803 9.82494 10.40750 11.26895 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011750 B = 0.003252 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.493132 B = 8608.566521 C =10509.710279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.196 6.196 3 C -0.093 4.093 4 H 0.110 0.890 5 C -0.144 4.144 6 C 0.539 3.461 7 O -0.527 6.527 8 N -0.605 5.605 9 C 0.113 3.887 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.095 4.095 13 H 0.072 0.928 14 C -0.071 4.071 15 C -0.138 4.138 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.062 0.938 20 C 0.005 3.995 21 N -0.906 5.906 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.145 3.855 27 C -0.126 4.126 28 C 0.106 3.894 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.016 0.984 45 H 0.086 0.914 46 H 0.254 0.746 47 H 0.015 0.985 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.056 0.944 51 H 0.073 0.927 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 -13.281 -2.016 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.030 5.970 3 C -0.225 4.225 4 H 0.128 0.872 5 C -0.203 4.203 6 C 0.325 3.675 7 O -0.403 6.403 8 N -0.338 5.338 9 C -0.009 4.009 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.090 0.910 14 C -0.090 4.090 15 C -0.177 4.177 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.080 0.920 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.018 3.982 27 C -0.165 4.165 28 C -0.017 4.017 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.091 0.909 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.783 -14.646 -2.067 18.304 hybrid contribution -1.713 1.678 -0.323 2.420 sum 9.070 -12.967 -2.390 16.004 Atomic orbital electron populations 1.23557 0.95306 1.06604 1.05268 1.87282 1.05308 1.06517 1.97910 1.23380 0.97268 0.97999 1.03827 0.87191 1.22025 1.02148 1.01576 0.94538 1.19642 0.88860 0.82230 0.76792 1.90712 1.60453 1.39621 1.49482 1.48055 1.07480 1.14257 1.64041 1.21612 0.79905 0.98607 1.00795 1.21931 1.00311 0.94759 1.00189 1.21649 0.94331 0.98117 1.01343 1.21615 0.95369 0.94247 1.00217 0.90956 1.21039 0.95300 0.93310 0.99339 1.22310 0.94694 0.99635 1.01041 1.20761 0.98529 0.82628 0.93432 1.43994 1.00968 1.19858 1.66686 1.19136 0.91476 1.19724 1.07911 0.91999 1.25142 0.99063 0.99543 0.95638 1.69963 1.19543 1.47805 1.17716 0.86366 0.81234 0.79820 0.79291 1.21017 1.21595 1.20873 1.20908 0.85790 0.94467 0.96992 1.22080 0.98551 0.96176 0.99742 1.22073 0.94052 0.86629 0.98896 0.90326 0.90206 0.87853 0.90753 0.90994 0.90629 0.89209 0.91423 0.91623 0.90772 0.90897 0.91782 0.91755 0.92790 0.93680 0.96633 0.89538 0.93599 0.96679 0.93057 0.93018 0.92556 0.90888 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 10.45 101.05 1.06 -0.07 16 2 S -0.20 -2.30 21.04 -107.50 -2.26 -4.57 16 3 C -0.09 -1.03 2.32 -27.89 -0.06 -1.10 16 4 H 0.11 1.09 6.51 -51.93 -0.34 0.75 16 5 C -0.14 -1.44 8.89 37.16 0.33 -1.11 16 6 C 0.54 7.07 6.86 -10.99 -0.08 6.99 16 7 O -0.53 -8.62 15.49 5.56 0.09 -8.53 16 8 N -0.60 -6.86 2.97 -172.71 -0.51 -7.38 16 9 C 0.11 1.16 6.42 -3.71 -0.02 1.13 16 10 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16 11 C -0.12 -1.16 4.86 -26.69 -0.13 -1.29 16 12 C -0.10 -1.08 1.92 -90.50 -0.17 -1.25 16 13 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.07 -1.01 1.74 -90.58 -0.16 -1.16 16 15 C -0.14 -2.29 5.05 -26.61 -0.13 -2.43 16 16 C 0.17 3.85 5.25 -3.71 -0.02 3.83 16 17 N -0.59 -14.21 2.99 -172.31 -0.51 -14.72 16 18 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 19 H 0.06 1.63 7.85 -52.48 -0.41 1.22 16 20 C 0.00 0.13 5.05 -17.43 -0.09 0.04 16 21 N -0.91 -25.55 11.05 55.49 0.61 -24.93 16 22 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.14 2.88 6.52 -3.71 -0.02 2.86 16 27 C -0.13 -1.97 5.05 -26.61 -0.13 -2.11 16 28 C 0.11 1.13 4.69 -3.67 -0.02 1.11 16 29 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.08 0.59 7.14 -51.93 -0.37 0.22 16 31 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.63 6.92 -51.92 -0.36 0.27 16 34 H 0.07 0.76 7.37 -51.93 -0.38 0.38 16 35 H 0.09 1.01 7.04 -51.93 -0.37 0.65 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.74 6.33 -51.93 -0.33 0.41 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.65 6.49 -51.93 -0.34 0.31 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 2.20 6.10 -51.93 -0.32 1.89 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 49 H 0.05 0.69 6.33 -51.93 -0.33 0.36 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.09 0.92 3.61 -51.93 -0.19 0.73 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -30.64 397.09 -10.79 -41.43 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -9.19 Total: -0.64 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.42 Total: -47.03 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.26 Total: -4.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.64 -10.79 -41.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047225573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.056 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds