Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81404 * 102.99821 * 2 1 4 4 H 1.08994 * 109.46994 * 55.00367 * 3 2 1 5 5 C 1.52996 * 109.47477 * 295.00154 * 3 2 1 6 6 C 1.50693 * 109.46958 * 175.00264 * 3 2 1 7 7 O 1.21283 * 120.00294 * 20.56160 * 6 3 2 8 8 N 1.34782 * 120.00295 * 200.56240 * 6 3 2 9 9 C 1.46924 * 120.63226 * 185.18075 * 8 6 3 10 10 C 1.53188 * 108.77593 * 126.41601 * 9 8 6 11 11 C 1.53039 * 109.31684 * 54.63127 * 10 9 8 12 12 C 1.53042 * 109.53530 * 298.63863 * 11 10 9 13 13 H 1.08998 * 109.49488 * 301.40728 * 12 11 10 14 14 C 1.53004 * 109.49380 * 181.34878 * 12 11 10 15 15 C 1.53042 * 109.45564 * 180.08924 * 14 12 11 16 16 C 1.53197 * 109.30847 * 178.59842 * 15 14 12 17 17 N 1.46924 * 108.76622 * 54.65981 * 16 15 14 18 18 C 1.36936 * 120.63253 * 126.40194 * 17 16 15 19 19 H 1.08005 * 120.00006 * 211.37437 * 18 17 16 20 20 C 1.38808 * 120.00105 * 31.37672 * 18 17 16 21 21 N 1.31624 * 119.99947 * 10.60010 * 20 18 17 22 22 Si 1.86799 * 120.00169 * 190.60534 * 20 18 17 23 23 H 1.48492 * 109.47226 * 59.99816 * 22 20 18 24 24 H 1.48500 * 109.46982 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47173 * 299.99732 * 22 20 18 26 26 C 1.46931 * 118.73667 * 306.38319 * 17 16 15 27 27 C 1.53036 * 109.46205 * 60.03964 * 14 12 11 28 28 C 1.46999 * 120.60799 * 5.19990 * 8 6 3 29 29 H 1.09006 * 109.46646 * 300.00009 * 1 2 3 30 30 H 1.08996 * 109.47482 * 59.99802 * 1 2 3 31 31 H 1.08999 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47452 * 300.00397 * 5 3 2 33 33 H 1.09010 * 109.47093 * 59.99911 * 5 3 2 34 34 H 1.08997 * 109.47539 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.58778 * 6.62048 * 9 8 6 36 36 H 1.09007 * 109.70314 * 246.26749 * 9 8 6 37 37 H 1.09003 * 109.49573 * 294.67686 * 10 9 8 38 38 H 1.09002 * 109.50180 * 174.58545 * 10 9 8 39 39 H 1.09000 * 109.46062 * 178.61426 * 11 10 9 40 40 H 1.09002 * 109.45682 * 58.65730 * 11 10 9 41 41 H 1.09002 * 109.45885 * 300.06108 * 14 12 11 42 42 H 1.08996 * 109.50406 * 298.56189 * 15 14 12 43 43 H 1.09003 * 109.49518 * 58.66655 * 15 14 12 44 44 H 1.09002 * 109.60037 * 294.86741 * 16 15 14 45 45 H 1.09002 * 109.58415 * 174.44023 * 16 15 14 46 46 H 0.97000 * 119.99979 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.58287 * 293.81701 * 26 17 16 48 48 H 1.08996 * 109.58907 * 173.39732 * 26 17 16 49 49 H 1.09003 * 109.49246 * 301.33322 * 27 14 12 50 50 H 1.09002 * 109.50311 * 61.43029 * 27 14 12 51 51 H 1.09003 * 109.57877 * 113.81069 * 28 8 6 52 52 H 1.08990 * 109.63357 * 353.35806 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4017 -1.3073 6 6 3.7141 1.9386 0.1238 7 8 4.4555 1.0234 -0.1654 8 7 4.2248 3.1087 0.5558 9 6 5.6771 3.3303 0.5745 10 6 5.9891 4.6197 -0.1915 11 6 5.1702 5.7699 0.3987 12 6 3.6779 5.4665 0.2464 13 1 3.4405 5.3293 -0.8086 14 6 2.8601 6.6322 0.8063 15 6 1.3681 6.3269 0.6556 16 6 0.5526 7.4802 1.2488 17 7 0.9785 8.7353 0.6149 18 6 0.0621 9.5668 0.0284 19 1 0.3451 10.1667 -0.8240 20 6 -1.2304 9.6386 0.5292 21 7 -1.5214 9.0756 1.6829 22 14 -2.5570 10.5341 -0.4340 23 1 -2.7223 9.8924 -1.7628 24 1 -3.8397 10.4680 0.3113 25 1 -2.1633 11.9544 -0.6157 26 6 2.4064 9.0816 0.6227 27 6 3.2010 7.9103 0.0368 28 6 3.3389 4.1871 1.0175 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2353 1.9151 -2.1492 33 1 0.6634 2.2779 -1.3968 34 1 1.9883 3.4636 -1.3075 35 1 6.1811 2.4902 0.0966 36 1 6.0212 3.4248 1.6045 37 1 5.7299 4.4903 -1.2424 38 1 7.0515 4.8470 -0.1038 39 1 5.4088 6.6935 -0.1286 40 1 5.4118 5.8826 1.4556 41 1 3.0981 6.7689 1.8612 42 1 1.1245 6.2147 -0.4009 43 1 1.1304 5.4038 1.1843 44 1 0.7266 7.5361 2.3234 45 1 -0.5075 7.3149 1.0564 46 1 -2.4246 9.1261 2.0331 47 1 2.7315 9.2682 1.6463 48 1 2.5695 9.9731 0.0171 49 1 4.2681 8.1143 0.1251 50 1 2.9401 7.7830 -1.0138 51 1 3.4901 4.3525 2.0843 52 1 2.3005 3.9127 0.8318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047225573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -45.107628 kcal Electronic energy + Delta-G solvation = -29250.994123 eV Core-core repulsion = 25568.828722 eV Total energy + Delta-G solvation = -3682.165401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54312 -39.80337 -38.05677 -35.49515 -34.90826 -33.44304 -32.76366 -31.40599 -30.50955 -29.64624 -27.06007 -26.90732 -25.36721 -24.46717 -23.56919 -22.51347 -21.43948 -20.64486 -20.01921 -18.66839 -18.51735 -17.79460 -16.82045 -16.53081 -16.44570 -15.81942 -15.57226 -15.35739 -15.22575 -15.16328 -14.95200 -14.75112 -14.50459 -14.44800 -14.21883 -14.06349 -13.77445 -13.72020 -13.44318 -13.28912 -13.04194 -12.93065 -12.81143 -12.69767 -12.59924 -12.50965 -12.24143 -12.07036 -11.95661 -11.76629 -11.73846 -11.55701 -11.29517 -11.06586 -10.88364 -10.86628 -10.67042 -10.49542 -9.68509 -8.74397 -8.56435 -7.83534 -5.33892 0.44652 1.41133 1.47801 1.48546 1.55499 1.59914 1.94593 2.52309 3.25235 3.31478 3.66794 3.74879 3.78003 3.81618 3.88869 3.95977 4.07546 4.23877 4.25279 4.32589 4.36010 4.37150 4.46784 4.53884 4.56568 4.58074 4.63386 4.67775 4.81516 4.82287 4.83606 4.90790 4.93600 4.97691 5.02246 5.06521 5.11408 5.12826 5.18171 5.36756 5.40510 5.42293 5.47341 5.51992 5.55579 5.62833 5.72311 5.89188 6.23507 6.45298 6.98592 7.20830 7.92416 8.43491 9.21041 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011750 B = 0.003252 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.493132 B = 8608.566521 C =10509.710279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.256 6.256 3 C -0.083 4.083 4 H 0.124 0.876 5 C -0.139 4.139 6 C 0.533 3.467 7 O -0.565 6.565 8 N -0.600 5.600 9 C 0.109 3.891 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.083 4.083 13 H 0.068 0.932 14 C -0.062 4.062 15 C -0.123 4.123 16 C 0.177 3.823 17 N -0.612 5.612 18 C -0.264 4.264 19 H 0.061 0.939 20 C -0.046 4.046 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.278 1.278 26 C 0.139 3.861 27 C -0.114 4.114 28 C 0.106 3.894 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.070 0.930 44 H -0.007 1.007 45 H 0.049 0.951 46 H 0.249 0.751 47 H 0.011 0.989 48 H 0.045 0.955 49 H 0.083 0.917 50 H 0.049 0.951 51 H 0.083 0.917 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.656 -13.346 -2.459 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.031 6.031 3 C -0.214 4.214 4 H 0.141 0.859 5 C -0.198 4.198 6 C 0.320 3.680 7 O -0.445 6.445 8 N -0.332 5.332 9 C -0.013 4.013 10 C -0.162 4.162 11 C -0.152 4.152 12 C -0.102 4.102 13 H 0.086 0.914 14 C -0.081 4.081 15 C -0.162 4.162 16 C 0.052 3.948 17 N -0.336 5.336 18 C -0.394 4.394 19 H 0.078 0.922 20 C -0.242 4.242 21 N -0.581 5.581 22 Si 0.792 3.208 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.204 1.204 26 C 0.013 3.987 27 C -0.153 4.153 28 C -0.016 4.016 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.011 0.989 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.064 0.936 49 H 0.101 0.899 50 H 0.068 0.932 51 H 0.101 0.899 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.585 -14.690 -2.516 18.877 hybrid contribution -1.931 1.742 -0.152 2.605 sum 9.654 -12.949 -2.667 16.370 Atomic orbital electron populations 1.23593 0.91654 1.07751 1.06163 1.87489 1.09400 1.08139 1.98061 1.23341 0.96035 0.97233 1.04822 0.85852 1.21999 1.02937 1.01255 0.93594 1.20004 0.89569 0.82156 0.76275 1.90693 1.61492 1.40955 1.51329 1.48112 1.08130 1.13810 1.63126 1.21738 0.79153 0.98730 1.01712 1.21861 1.01427 0.93631 0.99300 1.21635 0.92995 0.98466 1.02072 1.21435 0.95994 0.93067 0.99720 0.91366 1.20918 0.93831 0.93893 0.99430 1.22101 0.95589 0.98136 1.00394 1.20593 0.97529 0.84307 0.92415 1.44287 1.02304 1.20334 1.66665 1.19454 0.92382 1.19689 1.07901 0.92156 1.25834 1.01003 1.00769 0.96568 1.70129 1.19473 1.49302 1.19167 0.85403 0.78473 0.78840 0.78082 1.20346 1.21979 1.20382 1.21081 0.84213 0.96366 0.96997 1.21938 0.99525 0.94826 0.98990 1.22106 0.94153 0.85997 0.99311 0.89413 0.89226 0.86617 0.91711 0.89535 0.90483 0.90578 0.90035 0.92461 0.88723 0.90528 0.90890 0.91629 0.93300 0.91117 0.98928 0.93224 0.94185 0.97100 0.93592 0.89879 0.93174 0.89867 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 10.45 113.37 1.19 -0.58 16 2 S -0.26 -5.87 21.04 -56.49 -1.19 -7.06 16 3 C -0.08 -1.73 2.32 29.84 0.07 -1.66 16 4 H 0.12 2.19 6.51 -2.39 -0.02 2.17 16 5 C -0.14 -2.55 8.89 71.98 0.64 -1.91 16 6 C 0.53 13.47 6.86 87.65 0.60 14.07 16 7 O -0.57 -18.54 15.49 -3.04 -0.05 -18.59 16 8 N -0.60 -12.42 2.97 -818.73 -2.43 -14.86 16 9 C 0.11 1.99 6.42 86.36 0.55 2.54 16 10 C -0.12 -1.89 6.08 30.67 0.19 -1.70 16 11 C -0.11 -1.85 4.86 30.62 0.15 -1.70 16 12 C -0.08 -1.62 1.92 -10.71 -0.02 -1.64 16 13 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 14 C -0.06 -1.59 1.74 -10.77 -0.02 -1.61 16 15 C -0.12 -3.92 5.05 30.67 0.15 -3.76 16 16 C 0.18 7.99 5.25 86.36 0.45 8.44 16 17 N -0.61 -29.54 2.99 -699.08 -2.09 -31.63 16 18 C -0.26 -14.23 9.58 84.03 0.81 -13.42 16 19 H 0.06 3.20 7.85 -2.91 -0.02 3.17 16 20 C -0.05 -2.53 5.05 84.86 0.43 -2.10 16 21 N -0.93 -53.96 11.05 21.65 0.24 -53.72 16 22 Si 0.96 43.94 29.57 68.60 2.03 45.97 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 C 0.14 5.41 6.52 86.36 0.56 5.98 16 27 C -0.11 -3.28 5.05 30.67 0.15 -3.13 16 28 C 0.11 1.96 4.69 86.35 0.41 2.36 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.12 7.14 -2.39 -0.02 1.10 16 31 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.32 6.92 -2.38 -0.02 1.31 16 34 H 0.08 1.39 7.37 -2.39 -0.02 1.38 16 35 H 0.08 1.64 7.04 -2.39 -0.02 1.63 16 36 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.23 6.33 -2.39 -0.02 1.21 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.88 6.49 -2.39 -0.02 1.86 16 44 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.05 2.59 6.10 -2.39 -0.01 2.58 16 46 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 47 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 48 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 49 H 0.08 1.91 6.33 -2.39 -0.02 1.89 16 50 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.09 1.64 3.61 -2.39 -0.01 1.63 16 Total: -1.00 -68.53 397.09 3.70 -64.83 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.88 Total: 14.88 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 6.31 Total: 0.17 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -4.28 Total: -100.21 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -5.87 SS G_CDS: -1.19 Total: -7.06 kcal Total: -68.53 3.70 -64.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047225573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.720 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds