Wall clock time and date at job start Sat Apr 11 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 103.00055 * 2 1 4 4 H 1.09004 * 109.47496 * 54.99809 * 3 2 1 5 5 C 1.52995 * 109.47115 * 294.99943 * 3 2 1 6 6 C 1.50700 * 109.46949 * 174.99650 * 3 2 1 7 7 O 1.21282 * 120.00127 * 25.00021 * 6 3 2 8 8 N 1.34778 * 120.00033 * 204.99447 * 6 3 2 9 9 C 1.46922 * 120.62832 * 359.72865 * 8 6 3 10 10 C 1.52764 * 109.00572 * 233.57894 * 9 8 6 11 11 C 1.53046 * 109.38128 * 305.58668 * 10 9 8 12 12 C 1.53041 * 109.53745 * 61.24276 * 11 10 9 13 13 H 1.08998 * 109.49614 * 58.58296 * 12 11 10 14 14 C 1.52998 * 109.49768 * 178.68054 * 12 11 10 15 15 C 1.53043 * 109.46063 * 299.86524 * 14 12 11 16 16 C 1.53192 * 109.31149 * 178.60205 * 15 14 12 17 17 N 1.46925 * 108.76500 * 54.65662 * 16 15 14 18 18 C 1.36937 * 120.63158 * 126.36267 * 17 16 15 19 19 H 1.08002 * 120.00018 * 207.69425 * 18 17 16 20 20 C 1.38813 * 120.00065 * 27.69941 * 18 17 16 21 21 N 1.31617 * 119.99797 * 17.34688 * 20 18 17 22 22 Si 1.86798 * 119.99966 * 197.35380 * 20 18 17 23 23 H 1.48502 * 109.47214 * 89.99437 * 22 20 18 24 24 H 1.48504 * 109.47031 * 209.99479 * 22 20 18 25 25 H 1.48494 * 109.47056 * 329.99629 * 22 20 18 26 26 C 1.46924 * 118.73814 * 306.38305 * 17 16 15 27 27 C 1.53042 * 109.45828 * 179.81129 * 14 12 11 28 28 C 1.46926 * 120.63098 * 180.02562 * 8 6 3 29 29 H 1.09002 * 109.46731 * 60.00139 * 1 2 3 30 30 H 1.09006 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47191 * 300.00439 * 1 2 3 32 32 H 1.08999 * 109.47863 * 59.99989 * 5 3 2 33 33 H 1.09006 * 109.47364 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.47275 * 299.99993 * 5 3 2 35 35 H 1.09000 * 109.58996 * 353.41426 * 9 8 6 36 36 H 1.08999 * 109.59039 * 113.84245 * 9 8 6 37 37 H 1.09001 * 109.56708 * 185.55702 * 10 9 8 38 38 H 1.08995 * 109.39054 * 65.51480 * 10 9 8 39 39 H 1.08998 * 109.46278 * 301.21623 * 11 10 9 40 40 H 1.09005 * 109.44781 * 181.25372 * 11 10 9 41 41 H 1.09000 * 109.45898 * 59.84001 * 14 12 11 42 42 H 1.09000 * 109.49687 * 298.56535 * 15 14 12 43 43 H 1.08997 * 109.49767 * 58.65971 * 15 14 12 44 44 H 1.08998 * 109.59996 * 294.86650 * 16 15 14 45 45 H 1.09002 * 109.58357 * 174.43224 * 16 15 14 46 46 H 0.97000 * 119.99528 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.58851 * 293.82209 * 26 17 16 48 48 H 1.08994 * 109.58819 * 173.40156 * 26 17 16 49 49 H 1.09002 * 109.49895 * 301.33333 * 27 14 12 50 50 H 1.08995 * 109.49924 * 61.39904 * 27 14 12 51 51 H 1.08996 * 109.58807 * 246.16215 * 28 8 6 52 52 H 1.09003 * 109.58700 * 6.44557 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3073 6 6 3.7142 1.9384 0.1239 7 8 4.4584 1.0530 -0.2407 8 7 4.2217 3.0755 0.6399 9 6 3.3331 4.1594 1.0803 10 6 3.7544 5.4578 0.3945 11 6 5.2394 5.7143 0.6611 12 6 6.0694 4.5675 0.0796 13 1 5.8805 4.4882 -0.9910 14 6 7.5558 4.8410 0.3177 15 6 7.9495 6.1509 -0.3689 16 6 9.4297 6.4393 -0.0991 17 7 10.2222 5.2758 -0.5199 18 6 11.2691 5.4226 -1.3903 19 1 11.5564 4.6032 -2.0325 20 6 11.9612 6.6245 -1.4471 21 7 11.8562 7.4915 -0.4624 22 14 13.0413 7.0115 -2.9212 23 1 12.2366 7.7118 -3.9543 24 1 14.1662 7.8826 -2.4955 25 1 13.5798 5.7480 -3.4856 26 6 9.8698 3.9518 0.0107 27 6 8.3846 3.6915 -0.2600 28 6 5.6741 3.2571 0.7666 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.6636 2.2778 -1.3970 33 1 1.9884 3.4635 -1.3075 34 1 2.2354 1.9149 -2.1492 35 1 2.3044 3.9217 0.8093 36 1 3.4101 4.2788 2.1610 37 1 3.1657 6.2864 0.7882 38 1 3.5873 5.3707 -0.6791 39 1 5.4099 5.7774 1.7358 40 1 5.5359 6.6520 0.1908 41 1 7.7432 4.9216 1.3884 42 1 7.7858 6.0623 -1.4429 43 1 7.3425 6.9655 0.0261 44 1 9.5793 6.6176 0.9657 45 1 9.7401 7.3171 -0.6659 46 1 12.3396 8.3316 -0.5024 47 1 10.0553 3.9272 1.0846 48 1 10.4706 3.1884 -0.4835 49 1 8.0874 2.7553 0.2127 50 1 8.2163 3.6258 -1.3348 51 1 5.9463 3.3011 1.8211 52 1 6.1896 2.4228 0.2906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047225574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:46 Heat of formation + Delta-G solvation = -27.220918 kcal Electronic energy + Delta-G solvation = -28753.063803 eV Core-core repulsion = 25071.674027 eV Total energy + Delta-G solvation = -3681.389775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59473 -38.52084 -36.82515 -34.48157 -33.38375 -32.47009 -31.31827 -29.99542 -29.25639 -28.92516 -26.16713 -25.36448 -24.29916 -23.25752 -22.06166 -21.40238 -20.20009 -19.33566 -18.94047 -17.73479 -17.00506 -16.68474 -15.63126 -15.51343 -14.90874 -14.81484 -14.59383 -14.49877 -14.01481 -13.98939 -13.78368 -13.58763 -13.53324 -13.38880 -13.13671 -13.02367 -12.80964 -12.64140 -12.29376 -12.23100 -12.17858 -11.97497 -11.55867 -11.36996 -11.20798 -10.95652 -10.84217 -10.66620 -10.55991 -10.29424 -10.19994 -10.14103 -10.08705 -9.91923 -9.81210 -9.36298 -9.30233 -8.75339 -8.41850 -7.99328 -6.61141 -5.74161 -3.15501 1.10413 2.13865 2.41839 2.79426 3.40501 3.47267 3.48782 4.04191 4.36348 4.43412 4.53879 4.57642 4.70367 4.71662 4.74363 4.77611 4.93158 5.05627 5.10852 5.14304 5.18438 5.32406 5.39133 5.39874 5.47235 5.55883 5.58642 5.63007 5.70682 5.76830 5.85588 5.91002 5.99356 6.07050 6.12991 6.26116 6.31228 6.41553 6.44411 6.61973 6.71067 6.77943 6.88483 6.94144 7.08329 7.15317 7.43948 7.71021 7.84456 7.93211 8.50432 9.27005 9.90928 10.47825 11.34199 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002321 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.474055 B =12058.734565 C =12564.075720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.190 6.190 3 C -0.094 4.094 4 H 0.107 0.893 5 C -0.143 4.143 6 C 0.534 3.466 7 O -0.518 6.518 8 N -0.605 5.605 9 C 0.103 3.897 10 C -0.135 4.135 11 C -0.118 4.118 12 C -0.094 4.094 13 H 0.071 0.929 14 C -0.069 4.069 15 C -0.134 4.134 16 C 0.171 3.829 17 N -0.593 5.593 18 C -0.248 4.248 19 H 0.065 0.935 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.145 3.855 27 C -0.130 4.130 28 C 0.116 3.884 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.015 0.985 45 H 0.086 0.914 46 H 0.252 0.748 47 H 0.016 0.984 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.057 0.943 51 H 0.068 0.932 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.523 -6.765 4.058 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.036 5.964 3 C -0.226 4.226 4 H 0.125 0.875 5 C -0.202 4.202 6 C 0.320 3.680 7 O -0.393 6.393 8 N -0.338 5.338 9 C -0.020 4.020 10 C -0.173 4.173 11 C -0.155 4.155 12 C -0.114 4.114 13 H 0.089 0.911 14 C -0.088 4.088 15 C -0.173 4.173 16 C 0.045 3.955 17 N -0.316 5.316 18 C -0.378 4.378 19 H 0.082 0.918 20 C -0.199 4.199 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.019 3.981 27 C -0.169 4.169 28 C -0.006 4.006 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.335 -7.987 3.890 26.847 hybrid contribution -0.412 1.497 -0.627 1.674 sum -25.747 -6.491 3.263 26.752 Atomic orbital electron populations 1.23549 0.95703 1.06700 1.04854 1.87512 1.04821 1.06231 1.97834 1.23386 0.97655 0.98156 1.03359 0.87530 1.22018 1.01789 1.01304 0.95115 1.19597 0.88663 0.82209 0.77567 1.90757 1.60074 1.40552 1.47917 1.48056 1.07865 1.15794 1.62127 1.21763 0.93560 0.87225 0.99456 1.21866 0.97800 0.96471 1.01173 1.21649 0.93234 0.99288 1.01335 1.21589 0.96179 0.93441 1.00148 0.91087 1.21013 0.91183 0.96722 0.99900 1.22260 1.00353 0.95067 0.99613 1.20768 0.85545 0.91740 0.97445 1.44066 1.33506 1.01583 1.52411 1.19216 1.07134 0.99379 1.12050 0.91757 1.25022 0.98205 0.99046 0.97589 1.70042 1.45027 1.10075 1.29763 0.86299 0.79831 0.78021 0.82709 1.21533 1.21827 1.20458 1.20893 0.92218 0.88992 0.95987 1.22108 0.97976 0.96293 1.00524 1.21844 0.78355 0.99411 1.00945 0.90361 0.87766 0.90589 0.91281 0.91027 0.90387 0.90141 0.91039 0.90664 0.91542 0.91761 0.90701 0.91857 0.92907 0.93235 0.96658 0.89627 0.93755 0.96648 0.92996 0.93102 0.92446 0.91391 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 10.45 101.05 1.06 0.27 16 2 S -0.19 -1.95 21.10 -107.50 -2.27 -4.21 16 3 C -0.09 -0.84 2.32 -27.89 -0.06 -0.91 16 4 H 0.11 0.71 6.50 -51.92 -0.34 0.37 16 5 C -0.14 -1.03 8.89 37.15 0.33 -0.70 16 6 C 0.53 6.71 6.82 -10.98 -0.07 6.63 16 7 O -0.52 -8.75 15.55 5.56 0.09 -8.66 16 8 N -0.60 -6.65 2.98 -173.06 -0.52 -7.16 16 9 C 0.10 0.78 6.02 -3.93 -0.02 0.75 16 10 C -0.13 -1.07 6.07 -26.83 -0.16 -1.23 16 11 C -0.12 -1.23 4.86 -26.69 -0.13 -1.36 16 12 C -0.09 -1.21 1.92 -90.52 -0.17 -1.39 16 13 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.07 -1.10 1.74 -90.58 -0.16 -1.26 16 15 C -0.13 -2.46 5.05 -26.61 -0.13 -2.60 16 16 C 0.17 4.06 5.31 -3.71 -0.02 4.04 16 17 N -0.59 -15.07 2.99 -172.32 -0.52 -15.59 16 18 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 19 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 20 C 0.00 -0.01 4.91 -17.43 -0.09 -0.10 16 21 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 22 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 27 C -0.13 -2.30 5.05 -26.61 -0.13 -2.44 16 28 C 0.12 1.47 5.19 -3.73 -0.02 1.45 16 29 H 0.08 0.36 7.14 -51.92 -0.37 -0.01 16 30 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.36 6.92 -51.93 -0.36 0.00 16 33 H 0.07 0.46 7.45 -51.93 -0.39 0.07 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.44 4.98 -51.93 -0.26 0.18 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.84 6.34 -51.93 -0.33 0.51 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.81 6.34 -51.93 -0.33 0.48 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 49 H 0.05 0.81 6.49 -51.93 -0.34 0.47 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.10 1.45 5.59 -51.93 -0.29 1.16 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -32.67 397.32 -10.79 -43.46 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -9.19 Total: -2.14 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.41 Total: -48.62 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.27 Total: -4.21 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.67 -10.79 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047225574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.237 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds