Wall clock time and date at job start Sat Apr 11 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 103.00055 * 2 1 4 4 H 1.09004 * 109.47496 * 54.99809 * 3 2 1 5 5 C 1.52995 * 109.47115 * 294.99943 * 3 2 1 6 6 C 1.50700 * 109.46949 * 174.99650 * 3 2 1 7 7 O 1.21282 * 120.00127 * 25.00021 * 6 3 2 8 8 N 1.34778 * 120.00033 * 204.99447 * 6 3 2 9 9 C 1.46922 * 120.62832 * 359.72865 * 8 6 3 10 10 C 1.52764 * 109.00572 * 233.57894 * 9 8 6 11 11 C 1.53046 * 109.38128 * 305.58668 * 10 9 8 12 12 C 1.53041 * 109.53745 * 61.24276 * 11 10 9 13 13 H 1.08998 * 109.49614 * 58.58296 * 12 11 10 14 14 C 1.52998 * 109.49768 * 178.68054 * 12 11 10 15 15 C 1.53043 * 109.46063 * 299.86524 * 14 12 11 16 16 C 1.53192 * 109.31149 * 178.60205 * 15 14 12 17 17 N 1.46925 * 108.76500 * 54.65662 * 16 15 14 18 18 C 1.36937 * 120.63158 * 126.36267 * 17 16 15 19 19 H 1.08002 * 120.00018 * 207.69425 * 18 17 16 20 20 C 1.38813 * 120.00065 * 27.69941 * 18 17 16 21 21 N 1.31617 * 119.99797 * 17.34688 * 20 18 17 22 22 Si 1.86798 * 119.99966 * 197.35380 * 20 18 17 23 23 H 1.48502 * 109.47214 * 89.99437 * 22 20 18 24 24 H 1.48504 * 109.47031 * 209.99479 * 22 20 18 25 25 H 1.48494 * 109.47056 * 329.99629 * 22 20 18 26 26 C 1.46924 * 118.73814 * 306.38305 * 17 16 15 27 27 C 1.53042 * 109.45828 * 179.81129 * 14 12 11 28 28 C 1.46926 * 120.63098 * 180.02562 * 8 6 3 29 29 H 1.09002 * 109.46731 * 60.00139 * 1 2 3 30 30 H 1.09006 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47191 * 300.00439 * 1 2 3 32 32 H 1.08999 * 109.47863 * 59.99989 * 5 3 2 33 33 H 1.09006 * 109.47364 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.47275 * 299.99993 * 5 3 2 35 35 H 1.09000 * 109.58996 * 353.41426 * 9 8 6 36 36 H 1.08999 * 109.59039 * 113.84245 * 9 8 6 37 37 H 1.09001 * 109.56708 * 185.55702 * 10 9 8 38 38 H 1.08995 * 109.39054 * 65.51480 * 10 9 8 39 39 H 1.08998 * 109.46278 * 301.21623 * 11 10 9 40 40 H 1.09005 * 109.44781 * 181.25372 * 11 10 9 41 41 H 1.09000 * 109.45898 * 59.84001 * 14 12 11 42 42 H 1.09000 * 109.49687 * 298.56535 * 15 14 12 43 43 H 1.08997 * 109.49767 * 58.65971 * 15 14 12 44 44 H 1.08998 * 109.59996 * 294.86650 * 16 15 14 45 45 H 1.09002 * 109.58357 * 174.43224 * 16 15 14 46 46 H 0.97000 * 119.99528 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.58851 * 293.82209 * 26 17 16 48 48 H 1.08994 * 109.58819 * 173.40156 * 26 17 16 49 49 H 1.09002 * 109.49895 * 301.33333 * 27 14 12 50 50 H 1.08995 * 109.49924 * 61.39904 * 27 14 12 51 51 H 1.08996 * 109.58807 * 246.16215 * 28 8 6 52 52 H 1.09003 * 109.58700 * 6.44557 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3073 6 6 3.7142 1.9384 0.1239 7 8 4.4584 1.0530 -0.2407 8 7 4.2217 3.0755 0.6399 9 6 3.3331 4.1594 1.0803 10 6 3.7544 5.4578 0.3945 11 6 5.2394 5.7143 0.6611 12 6 6.0694 4.5675 0.0796 13 1 5.8805 4.4882 -0.9910 14 6 7.5558 4.8410 0.3177 15 6 7.9495 6.1509 -0.3689 16 6 9.4297 6.4393 -0.0991 17 7 10.2222 5.2758 -0.5199 18 6 11.2691 5.4226 -1.3903 19 1 11.5564 4.6032 -2.0325 20 6 11.9612 6.6245 -1.4471 21 7 11.8562 7.4915 -0.4624 22 14 13.0413 7.0115 -2.9212 23 1 12.2366 7.7118 -3.9543 24 1 14.1662 7.8826 -2.4955 25 1 13.5798 5.7480 -3.4856 26 6 9.8698 3.9518 0.0107 27 6 8.3846 3.6915 -0.2600 28 6 5.6741 3.2571 0.7666 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.6636 2.2778 -1.3970 33 1 1.9884 3.4635 -1.3075 34 1 2.2354 1.9149 -2.1492 35 1 2.3044 3.9217 0.8093 36 1 3.4101 4.2788 2.1610 37 1 3.1657 6.2864 0.7882 38 1 3.5873 5.3707 -0.6791 39 1 5.4099 5.7774 1.7358 40 1 5.5359 6.6520 0.1908 41 1 7.7432 4.9216 1.3884 42 1 7.7858 6.0623 -1.4429 43 1 7.3425 6.9655 0.0261 44 1 9.5793 6.6176 0.9657 45 1 9.7401 7.3171 -0.6659 46 1 12.3396 8.3316 -0.5024 47 1 10.0553 3.9272 1.0846 48 1 10.4706 3.1884 -0.4835 49 1 8.0874 2.7553 0.2127 50 1 8.2163 3.6258 -1.3348 51 1 5.9463 3.3011 1.8211 52 1 6.1896 2.4228 0.2906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047225574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:45 Heat of formation + Delta-G solvation = -45.613490 kcal Electronic energy + Delta-G solvation = -28753.861364 eV Core-core repulsion = 25071.674027 eV Total energy + Delta-G solvation = -3682.187337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52352 -39.82781 -38.12033 -35.81510 -34.47309 -33.53954 -32.77000 -31.63200 -30.51365 -29.60976 -27.20770 -26.84734 -25.22251 -24.55642 -23.54871 -22.69010 -21.40437 -20.71781 -20.01848 -18.71406 -18.51791 -17.79330 -16.88417 -16.49180 -16.37856 -15.74423 -15.66906 -15.52980 -15.31901 -15.14006 -14.89218 -14.74732 -14.49769 -14.44387 -14.17273 -14.11975 -13.84284 -13.78057 -13.48656 -13.23339 -13.04682 -12.96974 -12.89955 -12.66846 -12.62911 -12.59596 -12.17194 -12.00716 -11.93217 -11.87567 -11.75494 -11.56114 -11.41718 -11.09735 -10.86434 -10.80404 -10.70811 -10.54151 -9.67282 -8.73418 -8.68108 -7.88272 -5.33136 0.45099 1.44456 1.45535 1.46423 1.54777 1.65634 1.96146 2.49788 3.24858 3.31417 3.66777 3.71780 3.76020 3.80563 3.86613 3.92640 4.09458 4.19171 4.21385 4.35431 4.37787 4.39348 4.41709 4.54461 4.58110 4.60527 4.62104 4.65155 4.71835 4.78214 4.82923 4.89636 4.90965 4.93479 5.01644 5.05512 5.10399 5.12074 5.16925 5.28438 5.33323 5.40105 5.44110 5.49361 5.52722 5.56849 5.66719 5.80667 6.30889 6.38623 7.03984 7.14726 7.86598 8.37850 9.17536 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002321 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.474055 B =12058.734565 C =12564.075720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.277 6.277 3 C -0.074 4.074 4 H 0.138 0.862 5 C -0.139 4.139 6 C 0.525 3.475 7 O -0.573 6.573 8 N -0.601 5.601 9 C 0.097 3.903 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.080 4.080 13 H 0.056 0.944 14 C -0.061 4.061 15 C -0.118 4.118 16 C 0.176 3.824 17 N -0.612 5.612 18 C -0.263 4.263 19 H 0.060 0.940 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.272 1.272 26 C 0.141 3.859 27 C -0.118 4.118 28 C 0.119 3.881 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.076 0.924 44 H -0.003 1.003 45 H 0.051 0.949 46 H 0.250 0.750 47 H 0.015 0.985 48 H 0.045 0.955 49 H 0.070 0.930 50 H 0.043 0.957 51 H 0.077 0.923 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.104 -6.013 4.518 31.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.052 6.052 3 C -0.206 4.206 4 H 0.156 0.844 5 C -0.198 4.198 6 C 0.312 3.688 7 O -0.452 6.452 8 N -0.334 5.334 9 C -0.024 4.024 10 C -0.166 4.166 11 C -0.155 4.155 12 C -0.099 4.099 13 H 0.075 0.925 14 C -0.081 4.081 15 C -0.157 4.157 16 C 0.050 3.950 17 N -0.336 5.336 18 C -0.394 4.394 19 H 0.078 0.922 20 C -0.246 4.246 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.196 1.196 26 C 0.015 3.985 27 C -0.157 4.157 28 C -0.003 4.003 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.015 0.985 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.032 0.968 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.062 0.938 51 H 0.095 0.905 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.957 -7.226 4.364 30.162 hybrid contribution 0.715 1.229 -0.725 1.596 sum -28.242 -5.997 3.639 29.100 Atomic orbital electron populations 1.23574 0.90785 1.07714 1.06466 1.87846 1.10307 1.08985 1.98087 1.23326 0.94943 0.96861 1.05440 0.84421 1.22028 1.03176 1.01503 0.93127 1.20301 0.90157 0.81755 0.76592 1.90731 1.61689 1.42512 1.50279 1.48148 1.07481 1.16404 1.61340 1.22092 0.94176 0.85718 1.00429 1.21842 0.95935 0.97592 1.01250 1.21649 0.94808 0.97495 1.01536 1.21376 0.94071 0.94939 0.99544 0.92543 1.20914 0.93282 0.94429 0.99434 1.22042 0.96827 0.97456 0.99332 1.20629 0.88633 0.90260 0.95474 1.44348 1.33499 1.03193 1.52544 1.19491 1.07809 0.99528 1.12544 0.92202 1.25771 0.99860 0.98946 1.00065 1.70187 1.46078 1.10276 1.31385 0.85281 0.77996 0.77824 0.79454 1.21080 1.21866 1.19645 1.21033 0.94673 0.87205 0.95547 1.21951 0.95535 0.98159 1.00005 1.21630 0.79795 0.97939 1.00979 0.88847 0.87098 0.88730 0.88560 0.89623 0.92830 0.87297 0.89375 0.87748 0.91905 0.90893 0.91273 0.91513 0.94015 0.90531 0.98542 0.93056 0.94057 0.96751 0.93676 0.91136 0.93769 0.90471 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.45 113.37 1.19 0.21 16 2 S -0.28 -5.45 21.10 -56.49 -1.19 -6.64 16 3 C -0.07 -1.16 2.32 29.85 0.07 -1.09 16 4 H 0.14 1.23 6.50 -2.39 -0.02 1.22 16 5 C -0.14 -1.62 8.89 71.98 0.64 -0.97 16 6 C 0.52 12.66 6.82 87.66 0.60 13.26 16 7 O -0.57 -19.94 15.55 -3.04 -0.05 -19.99 16 8 N -0.60 -11.97 2.98 -819.83 -2.44 -14.41 16 9 C 0.10 1.05 6.02 86.22 0.52 1.57 16 10 C -0.13 -1.48 6.07 30.53 0.19 -1.29 16 11 C -0.12 -2.11 4.86 30.62 0.15 -1.96 16 12 C -0.08 -1.95 1.92 -10.73 -0.02 -1.97 16 13 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.06 -1.93 1.74 -10.77 -0.02 -1.95 16 15 C -0.12 -4.32 5.05 30.67 0.15 -4.17 16 16 C 0.18 8.60 5.31 86.36 0.46 9.06 16 17 N -0.61 -32.13 2.99 -699.10 -2.09 -34.23 16 18 C -0.26 -15.16 9.58 84.03 0.81 -14.35 16 19 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 20 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 21 N -0.93 -56.25 11.19 21.65 0.24 -56.01 16 22 Si 0.97 46.18 29.59 68.60 2.03 48.20 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 C 0.14 6.23 6.52 86.36 0.56 6.79 16 27 C -0.12 -4.22 5.05 30.67 0.15 -4.06 16 28 C 0.12 2.88 5.19 86.35 0.45 3.33 16 29 H 0.09 0.51 7.14 -2.39 -0.02 0.49 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.60 6.92 -2.39 -0.02 0.58 16 33 H 0.09 0.76 7.45 -2.38 -0.02 0.75 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.59 4.98 -2.39 -0.01 0.58 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.35 6.34 -2.38 -0.02 1.33 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 2.40 6.34 -2.39 -0.02 2.38 16 44 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.05 2.85 6.04 -2.39 -0.01 2.84 16 46 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 47 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 48 H 0.04 2.00 7.93 -2.39 -0.02 1.98 16 49 H 0.07 2.26 6.49 -2.39 -0.02 2.25 16 50 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.07 2.08 5.59 -2.39 -0.01 2.07 16 Total: -1.00 -76.31 397.32 3.69 -72.62 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.88 Total: 10.57 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.31 Total: -0.12 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.29 Total: -104.65 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.19 Total: -6.64 kcal Total: -76.31 3.69 -72.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047225574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.007 kcal (2) G-P(sol) polarization free energy of solvation -76.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds