Wall clock time and date at job start Sat Apr 11 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81402 * 102.99859 * 2 1 4 4 H 1.08998 * 109.47373 * 304.99457 * 3 2 1 5 5 C 1.52995 * 109.47132 * 65.00299 * 3 2 1 6 6 C 1.50707 * 109.47017 * 185.00239 * 3 2 1 7 7 O 1.21279 * 119.99764 * 339.99265 * 6 3 2 8 8 N 1.34769 * 120.00190 * 160.00239 * 6 3 2 9 9 C 1.46925 * 120.62990 * 359.97438 * 8 6 3 10 10 C 1.53196 * 108.77888 * 126.39339 * 9 8 6 11 11 C 1.53040 * 109.30900 * 54.63233 * 10 9 8 12 12 C 1.53040 * 109.54069 * 298.63549 * 11 10 9 13 13 H 1.08993 * 109.49702 * 301.41538 * 12 11 10 14 14 C 1.52999 * 109.49553 * 181.35167 * 12 11 10 15 15 C 1.53043 * 109.45767 * 180.02562 * 14 12 11 16 16 C 1.53198 * 109.31108 * 178.60210 * 15 14 12 17 17 N 1.46918 * 108.76678 * 54.65289 * 16 15 14 18 18 C 1.36933 * 120.63072 * 126.40634 * 17 16 15 19 19 H 1.08003 * 120.00373 * 207.66348 * 18 17 16 20 20 C 1.38816 * 120.00118 * 27.66009 * 18 17 16 21 21 N 1.31619 * 119.99603 * 17.37113 * 20 18 17 22 22 Si 1.86793 * 120.00121 * 197.36708 * 20 18 17 23 23 H 1.48503 * 109.47256 * 60.00013 * 22 20 18 24 24 H 1.48503 * 109.47184 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47520 * 300.00022 * 22 20 18 26 26 C 1.46929 * 118.73990 * 306.38493 * 17 16 15 27 27 C 1.53037 * 109.46252 * 59.97524 * 14 12 11 28 28 C 1.46925 * 120.63181 * 179.97438 * 8 6 3 29 29 H 1.09003 * 109.47291 * 60.00286 * 1 2 3 30 30 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47456 * 300.00326 * 1 2 3 32 32 H 1.09009 * 109.46960 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47254 * 299.99359 * 5 3 2 34 34 H 1.08998 * 109.47830 * 60.00117 * 5 3 2 35 35 H 1.09002 * 109.58678 * 6.60442 * 9 8 6 36 36 H 1.09006 * 109.58583 * 246.18016 * 9 8 6 37 37 H 1.08995 * 109.49784 * 174.58436 * 10 9 8 38 38 H 1.08993 * 109.49588 * 294.65223 * 10 9 8 39 39 H 1.09003 * 109.45951 * 58.66026 * 11 10 9 40 40 H 1.08999 * 109.45525 * 178.61484 * 11 10 9 41 41 H 1.09004 * 109.45973 * 299.99963 * 14 12 11 42 42 H 1.08998 * 109.49418 * 298.56264 * 15 14 12 43 43 H 1.08994 * 109.49764 * 58.66120 * 15 14 12 44 44 H 1.09003 * 109.59489 * 294.86416 * 16 15 14 45 45 H 1.09000 * 109.58395 * 174.43930 * 16 15 14 46 46 H 0.97001 * 119.99450 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.58228 * 293.82014 * 26 17 16 48 48 H 1.08996 * 109.58740 * 173.39606 * 26 17 16 49 49 H 1.09001 * 109.49679 * 301.33225 * 27 14 12 50 50 H 1.08996 * 109.50039 * 61.43156 * 27 14 12 51 51 H 1.09006 * 109.58740 * 113.82334 * 28 8 6 52 52 H 1.08995 * 109.58860 * 353.39567 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7427 2.4016 1.3073 6 6 3.7141 1.9386 -0.1239 7 8 4.4551 1.0200 0.1556 8 7 4.2252 3.1124 -0.5450 9 6 3.3404 4.2342 -0.8876 10 6 3.7777 5.4680 -0.0918 11 6 5.2621 5.7367 -0.3499 12 6 6.0889 4.5388 0.1231 13 1 5.9093 4.3692 1.1846 14 6 7.5751 4.8224 -0.1045 15 6 8.4010 3.6238 0.3681 16 6 9.8856 3.8968 0.1067 17 7 10.2512 5.1697 0.7427 18 6 11.3068 5.2372 1.6124 19 1 11.3177 5.9851 2.3915 20 6 12.3630 4.3443 1.4926 21 7 12.5320 3.6712 0.3743 22 14 13.5443 4.0984 2.9185 23 1 12.7946 3.6104 4.1039 24 1 14.5765 3.1002 2.5397 25 1 14.2013 5.3894 3.2454 26 6 9.4630 6.3690 0.4276 27 6 7.9832 6.0681 0.6853 28 6 5.6777 3.2945 -0.6703 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.9875 3.4638 1.3071 33 1 0.6635 2.2779 1.3969 34 1 2.2353 1.9150 2.1492 35 1 2.3119 3.9798 -0.6314 36 1 3.4122 4.4435 -1.9549 37 1 3.1916 6.3311 -0.4073 38 1 3.6194 5.2898 0.9718 39 1 5.4231 5.8906 -1.4169 40 1 5.5699 6.6286 0.1959 41 1 7.7542 4.9908 -1.1664 42 1 8.2416 3.4703 1.4354 43 1 8.0936 2.7321 -0.1781 44 1 10.0620 3.9609 -0.9671 45 1 10.4853 3.0911 0.5301 46 1 13.2702 3.0475 0.2906 47 1 9.6050 6.6346 -0.6199 48 1 9.7840 7.1945 1.0628 49 1 7.3785 6.9164 0.3648 50 1 7.8278 5.8913 1.7495 51 1 5.9402 3.4273 -1.7200 52 1 6.1915 2.4202 -0.2708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047225575.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:50 Heat of formation + Delta-G solvation = -26.667383 kcal Electronic energy + Delta-G solvation = -28805.271810 eV Core-core repulsion = 25123.906038 eV Total energy + Delta-G solvation = -3681.365772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57462 -38.50639 -36.80557 -34.49414 -33.36935 -32.39475 -31.41848 -29.81225 -29.28997 -28.94885 -26.15234 -25.34569 -24.29399 -23.21297 -22.12080 -21.37224 -20.19987 -19.33040 -18.93642 -17.67698 -16.97673 -16.67104 -15.65981 -15.47183 -14.93062 -14.72855 -14.66668 -14.47046 -14.02132 -13.96790 -13.72561 -13.57751 -13.49876 -13.40808 -13.08820 -13.01642 -12.87348 -12.62644 -12.26591 -12.19160 -12.14052 -12.00271 -11.45589 -11.37405 -11.21312 -11.00266 -10.83081 -10.62892 -10.59046 -10.33896 -10.15850 -10.13255 -10.09402 -9.88839 -9.78902 -9.38570 -9.25282 -8.73725 -8.39631 -7.96096 -6.59979 -5.72487 -3.14166 1.14081 2.17763 2.43394 2.81596 3.42357 3.48328 3.49713 4.06438 4.40188 4.44272 4.55125 4.57462 4.69052 4.72559 4.75833 4.78167 4.92829 5.06355 5.11023 5.13377 5.19091 5.34333 5.40130 5.40942 5.47736 5.55286 5.59710 5.63684 5.70158 5.77038 5.85798 5.89603 5.98031 6.08980 6.12386 6.23434 6.31872 6.42158 6.45913 6.60574 6.70513 6.79976 6.88490 6.94753 7.06261 7.17989 7.47467 7.74433 7.85206 7.96650 8.51934 9.28164 9.92282 10.49078 11.35820 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002516 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.444622 B =11126.818029 C =12132.549118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.186 6.186 3 C -0.094 4.094 4 H 0.107 0.893 5 C -0.144 4.144 6 C 0.533 3.467 7 O -0.515 6.515 8 N -0.605 5.605 9 C 0.102 3.898 10 C -0.135 4.135 11 C -0.117 4.117 12 C -0.094 4.094 13 H 0.071 0.929 14 C -0.069 4.069 15 C -0.138 4.138 16 C 0.171 3.829 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.063 0.937 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.145 3.855 27 C -0.126 4.126 28 C 0.116 3.884 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.016 0.984 45 H 0.086 0.914 46 H 0.254 0.746 47 H 0.015 0.985 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.780 1.048 -3.457 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.039 5.961 3 C -0.226 4.226 4 H 0.125 0.875 5 C -0.203 4.203 6 C 0.318 3.682 7 O -0.390 6.390 8 N -0.339 5.339 9 C -0.021 4.021 10 C -0.173 4.173 11 C -0.155 4.155 12 C -0.114 4.114 13 H 0.089 0.911 14 C -0.088 4.088 15 C -0.177 4.177 16 C 0.046 3.954 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.081 0.919 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.019 3.981 27 C -0.165 4.165 28 C -0.006 4.006 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.034 0.966 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.086 0.914 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.547 -0.456 -3.360 26.763 hybrid contribution -0.329 1.014 0.597 1.221 sum -26.876 0.558 -2.763 27.023 Atomic orbital electron populations 1.23553 0.95911 1.06682 1.04798 1.87567 1.04555 1.06121 1.97829 1.23375 0.97670 0.98250 1.03259 0.87542 1.22050 1.01800 1.01316 0.95173 1.19606 0.88641 0.82610 0.77300 1.90769 1.60239 1.39608 1.48404 1.48042 1.07888 1.11925 1.66043 1.21857 0.93670 0.86710 0.99836 1.21936 0.97689 0.97009 1.00636 1.21651 0.93365 0.98796 1.01655 1.21595 0.96073 0.93685 0.99999 0.91086 1.21011 0.91356 0.96721 0.99735 1.22284 0.99360 0.95648 1.00386 1.20764 0.89607 0.89807 0.95264 1.44049 1.33002 1.02589 1.51891 1.19131 0.96198 1.16695 1.06083 0.91884 1.25025 0.96904 1.01250 0.96563 1.70028 1.31457 1.29756 1.23499 0.86389 0.80484 0.77607 0.82412 1.21073 1.21647 1.20958 1.20889 0.89521 0.90556 0.97140 1.22082 0.98641 0.96084 0.99706 1.21848 0.78260 1.00031 1.00415 0.90626 0.87783 0.90403 0.90968 0.91310 0.90408 0.90092 0.91063 0.90766 0.91513 0.91789 0.90894 0.91870 0.92791 0.93234 0.96631 0.89596 0.93632 0.96726 0.93091 0.93125 0.92564 0.91359 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 10.45 101.05 1.06 0.22 16 2 S -0.19 -1.99 21.04 -107.50 -2.26 -4.25 16 3 C -0.09 -0.86 2.32 -27.88 -0.06 -0.93 16 4 H 0.11 0.73 6.80 -51.93 -0.35 0.38 16 5 C -0.14 -1.05 8.81 37.15 0.33 -0.72 16 6 C 0.53 6.90 6.88 -10.99 -0.08 6.83 16 7 O -0.52 -9.03 15.46 5.56 0.09 -8.94 16 8 N -0.61 -6.81 2.97 -172.76 -0.51 -7.32 16 9 C 0.10 0.77 5.81 -3.71 -0.02 0.75 16 10 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 11 C -0.12 -1.17 4.85 -26.69 -0.13 -1.30 16 12 C -0.09 -1.21 1.92 -90.50 -0.17 -1.39 16 13 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.07 -1.10 1.74 -90.58 -0.16 -1.26 16 15 C -0.14 -2.67 5.05 -26.61 -0.13 -2.81 16 16 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 17 N -0.59 -15.09 2.99 -172.32 -0.52 -15.60 16 18 C -0.25 -7.04 9.59 -15.06 -0.14 -7.18 16 19 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 20 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 21 N -0.90 -26.80 11.19 55.49 0.62 -26.18 16 22 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 27 C -0.13 -2.11 5.05 -26.61 -0.13 -2.25 16 28 C 0.12 1.52 5.19 -3.71 -0.02 1.50 16 29 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.38 7.14 -51.92 -0.37 0.00 16 32 H 0.07 0.45 6.89 -51.92 -0.36 0.09 16 33 H 0.07 0.36 6.92 -51.93 -0.36 0.00 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.44 4.76 -51.93 -0.25 0.19 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.74 6.33 -51.93 -0.33 0.42 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.90 6.50 -51.93 -0.34 0.56 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 49 H 0.05 0.71 6.33 -51.93 -0.33 0.38 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.10 1.57 5.59 -51.93 -0.29 1.28 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -33.02 396.44 -10.77 -43.78 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -9.17 Total: -2.05 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.41 Total: -49.10 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.26 Total: -4.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.02 -10.77 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047225575.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.117 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds