Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.51403 * 2 1 4 4 C 1.53282 * 109.51622 * 239.89777 * 2 1 3 5 5 N 1.47171 * 108.51856 * 186.99529 * 4 2 1 6 6 C 1.34783 * 121.07260 * 231.28351 * 5 4 2 7 7 O 1.21283 * 120.00033 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.99963 * 0.02562 * 6 5 4 9 9 F 1.39897 * 110.01773 * 58.60805 * 8 6 5 10 10 C 1.54269 * 110.03215 * 297.16235 * 8 6 5 11 11 C 1.54889 * 104.19735 * 217.10675 * 10 8 6 12 12 C 1.54892 * 102.74643 * 37.94023 * 11 10 8 13 13 C 1.53882 * 110.03197 * 179.97438 * 8 6 5 14 14 C 1.47316 * 117.85254 * 51.30633 * 5 4 2 15 15 C 1.52362 * 108.46622 * 310.86869 * 14 5 4 16 16 C 1.54359 * 110.41449 * 286.28654 * 15 14 5 17 17 C 1.54468 * 102.88156 * 207.65301 * 16 15 14 18 18 N 1.47083 * 107.29342 * 21.49180 * 17 16 15 19 19 C 1.36934 * 125.62975 * 181.03238 * 18 17 16 20 20 H 1.08000 * 120.00354 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00082 * 359.96119 * 19 18 17 22 22 N 1.31623 * 120.00124 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00266 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46964 * 59.99768 * 23 21 19 25 25 H 1.48505 * 109.47188 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47089 * 299.99970 * 23 21 19 27 27 C 1.47572 * 108.74198 * 0.99565 * 18 17 16 28 28 O 1.41876 * 111.48271 * 49.85832 * 15 14 5 29 29 H 1.09002 * 109.47153 * 180.10259 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.10450 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.10432 * 1 2 3 32 32 H 1.09006 * 109.62271 * 306.70244 * 4 2 1 33 33 H 1.08990 * 109.62646 * 67.08223 * 4 2 1 34 34 H 1.09002 * 110.48453 * 335.78612 * 10 8 6 35 35 H 1.09003 * 110.48015 * 98.42699 * 10 8 6 36 36 H 1.08997 * 110.75513 * 279.63127 * 11 10 8 37 37 H 1.08994 * 110.75566 * 156.25776 * 11 10 8 38 38 H 1.09000 * 110.48249 * 203.37762 * 12 11 10 39 39 H 1.09005 * 110.48320 * 80.73727 * 12 11 10 40 40 H 1.08998 * 110.03181 * 238.56849 * 13 8 6 41 41 H 1.08997 * 110.02778 * 359.95027 * 13 8 6 42 42 H 1.09000 * 109.63551 * 70.55887 * 14 5 4 43 43 H 1.09000 * 109.63879 * 191.17381 * 14 5 4 44 44 H 1.08992 * 110.73642 * 326.00434 * 16 15 14 45 45 H 1.09003 * 110.72931 * 89.31025 * 16 15 14 46 46 H 1.08998 * 109.87643 * 262.06970 * 17 16 15 47 47 H 1.08992 * 109.99952 * 140.98553 * 17 16 15 48 48 H 0.96996 * 120.00376 * 179.97438 * 22 21 19 49 49 H 1.08991 * 110.37565 * 217.85271 * 27 18 17 50 50 H 1.09004 * 110.37206 * 95.50835 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2499 5 7 3.5037 -0.8605 -1.1455 6 6 4.3122 -0.4706 -2.1509 7 8 5.5143 -0.5911 -2.0440 8 6 3.7226 0.1162 -3.4076 9 9 2.9701 1.2541 -3.0975 10 6 2.8348 -0.9297 -4.1131 11 6 3.0856 -0.6850 -5.6219 12 6 4.5990 -0.3583 -5.6682 13 6 4.8444 0.4800 -4.3962 14 6 4.0546 -1.4370 0.0932 15 6 3.4214 -0.7232 1.2810 16 6 4.0047 0.6983 1.4283 17 6 3.8578 0.9758 2.9408 18 7 3.7480 -0.3265 3.6156 19 6 3.5836 -0.5160 4.9617 20 1 3.5129 -1.5168 5.3615 21 6 3.5078 0.5781 5.8125 22 7 3.5946 1.7978 5.3255 23 14 3.2842 0.3196 7.6491 24 1 4.4243 -0.4697 8.1803 25 1 3.2341 1.6373 8.3320 26 1 2.0169 -0.4143 7.8949 27 6 3.8436 -1.3951 2.6023 28 8 2.0080 -0.6775 1.1665 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3633 0.5122 -0.8909 31 1 -0.3634 0.5155 0.8891 32 1 1.5860 -1.7127 -1.3129 33 1 1.7876 -0.1466 -2.1382 34 1 3.1391 -1.9386 -3.8345 35 1 1.7852 -0.7657 -3.8693 36 1 2.4970 0.1598 -5.9793 37 1 2.8662 -1.5823 -6.2004 38 1 4.8367 0.2226 -6.5594 39 1 5.1881 -1.2750 -5.6407 40 1 4.8015 1.5427 -4.6349 41 1 5.8152 0.2330 -3.9666 42 1 3.8206 -2.5007 0.1378 43 1 5.1352 -1.2954 0.1142 44 1 5.0536 0.7176 1.1326 45 1 3.4254 1.4153 0.8465 46 1 2.9592 1.5650 3.1238 47 1 4.7331 1.5111 3.3083 48 1 3.5414 2.5624 5.9199 49 1 3.1644 -2.2117 2.8469 50 1 4.8681 -1.7606 2.5318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071183769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -91.391153 kcal Electronic energy + Delta-G solvation = -32465.275292 eV Core-core repulsion = 28214.889710 eV Total energy + Delta-G solvation = -4250.385581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.22477 -40.68402 -39.12645 -37.12803 -36.39960 -34.75431 -33.09076 -31.32998 -29.93959 -29.23542 -29.02684 -28.19794 -26.57057 -25.59090 -23.83225 -22.11249 -21.64979 -21.28874 -20.18977 -19.56913 -18.99127 -17.96900 -17.01875 -16.93844 -16.32522 -16.18347 -15.65943 -15.22382 -14.86162 -14.67579 -14.58105 -14.29564 -14.14440 -13.82381 -13.69786 -13.49912 -13.41915 -12.91320 -12.58168 -12.29892 -12.23313 -12.18779 -11.97141 -11.87846 -11.83748 -11.59697 -11.51861 -11.43096 -11.22341 -10.97521 -10.95116 -10.89119 -10.82946 -10.34051 -10.20652 -10.09226 -10.05706 -9.77144 -9.63081 -9.51489 -8.54016 -8.44378 -6.78644 -5.65446 -2.98862 2.24905 2.63596 3.44649 3.48279 3.49834 3.76779 3.85927 3.89250 4.08188 4.25640 4.52307 4.66888 4.72548 4.84214 4.87620 4.97724 5.02969 5.05977 5.11409 5.16566 5.19502 5.31793 5.39124 5.46452 5.48791 5.51971 5.58747 5.61811 5.62621 5.73418 5.77912 5.79212 5.84129 5.90344 5.92518 6.02311 6.14173 6.19750 6.29141 6.50274 6.50980 6.55789 6.65750 7.14954 7.59161 7.66880 7.69165 7.83893 7.87814 8.30058 9.26484 9.86524 10.52298 11.46346 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.003032 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.949908 B = 9231.110489 C = 9597.061423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.068 3.932 5 N -0.598 5.598 6 C 0.505 3.495 7 O -0.522 6.522 8 C 0.103 3.897 9 F -0.188 7.188 10 C -0.144 4.144 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.143 4.143 14 C 0.096 3.904 15 C 0.093 3.907 16 C -0.166 4.166 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.154 3.846 28 O -0.343 6.343 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.252 0.748 49 H 0.051 0.949 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 -5.030 -23.796 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.055 4.055 5 N -0.330 5.330 6 C 0.291 3.709 7 O -0.398 6.398 8 C 0.081 3.919 9 F -0.169 7.169 10 C -0.182 4.182 11 C -0.161 4.161 12 C -0.159 4.159 13 C -0.181 4.181 14 C -0.027 4.027 15 C 0.052 3.948 16 C -0.204 4.204 17 C 0.061 3.939 18 N -0.325 5.325 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.027 3.973 28 O -0.262 6.262 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.309 -5.000 -23.367 24.124 hybrid contribution -0.131 0.231 0.877 0.917 sum -3.440 -4.769 -22.490 23.246 Atomic orbital electron populations 1.21688 0.92356 1.02939 1.02841 1.22426 0.95407 0.96180 0.84876 0.91506 1.22836 0.79630 1.02183 1.00870 1.48134 1.07060 1.61311 1.16496 1.20668 0.87033 0.78780 0.84460 1.90694 1.14121 1.55237 1.79779 1.21788 0.92398 0.83875 0.93832 1.92896 1.77454 1.52321 1.94220 1.23122 1.00014 0.98661 0.96385 1.22534 0.96593 1.02232 0.94739 1.22365 0.96171 1.00185 0.97228 1.22765 0.99198 1.01800 0.94359 1.22249 1.00652 0.97478 0.82300 1.22395 0.81129 0.96539 0.94765 1.23365 0.99934 0.95740 1.01402 1.21097 1.00807 0.87775 0.84177 1.44411 1.85844 1.00063 1.02199 1.18995 1.42862 0.92871 0.80633 0.90433 1.24793 1.02254 0.95268 0.98129 1.69959 1.56755 0.96958 1.33332 0.86186 0.77975 0.76594 0.84914 1.21205 1.21664 1.21188 1.21331 0.97488 0.92614 0.85915 1.87912 1.20064 1.76511 1.41707 0.91769 0.91237 0.90954 0.90374 0.88305 0.89394 0.89140 0.90668 0.90512 0.90687 0.90936 0.89657 0.87798 0.90612 0.87903 0.91729 0.91982 0.93514 0.93909 0.93772 0.93078 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.57 37.16 0.36 -1.27 16 2 C 0.07 1.00 3.20 -26.59 -0.09 0.91 16 3 H 0.07 1.05 6.25 -51.93 -0.32 0.73 16 4 C 0.07 0.79 4.90 -3.53 -0.02 0.77 16 5 N -0.60 -8.28 2.95 -172.70 -0.51 -8.79 16 6 C 0.51 7.12 6.71 -10.98 -0.07 7.04 16 7 O -0.52 -8.81 14.70 5.56 0.08 -8.73 16 8 C 0.10 1.12 1.08 -90.65 -0.10 1.03 16 9 F -0.19 -2.29 15.06 2.25 0.03 -2.25 16 10 C -0.14 -1.14 4.98 -25.07 -0.12 -1.26 16 11 C -0.12 -0.78 6.91 -24.74 -0.17 -0.95 16 12 C -0.12 -0.87 6.83 -25.05 -0.17 -1.04 16 13 C -0.14 -1.41 6.25 -25.59 -0.16 -1.57 16 14 C 0.10 1.48 5.29 -3.92 -0.02 1.46 16 15 C 0.09 1.72 0.84 -89.64 -0.08 1.65 16 16 C -0.17 -3.38 5.88 -25.25 -0.15 -3.53 16 17 C 0.19 4.74 5.39 -2.95 -0.02 4.73 16 18 N -0.60 -15.78 3.40 -170.31 -0.58 -16.36 16 19 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -27.77 10.31 55.49 0.57 -27.20 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 3.26 6.42 -2.86 -0.02 3.25 16 28 O -0.34 -6.34 9.92 -35.22 -0.35 -6.69 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.99 3.76 -51.93 -0.20 0.79 16 34 H 0.09 0.69 7.85 -51.93 -0.41 0.29 16 35 H 0.09 0.61 6.72 -51.93 -0.35 0.27 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 41 H 0.10 1.20 6.39 -51.93 -0.33 0.87 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.69 6.85 -51.93 -0.36 1.34 16 44 H 0.06 1.29 7.82 -51.93 -0.41 0.88 16 45 H 0.06 1.21 6.10 -51.93 -0.32 0.90 16 46 H 0.05 1.33 7.39 -51.93 -0.38 0.94 16 47 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.04 0.73 7.99 -51.93 -0.42 0.32 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -33.20 377.42 -9.23 -42.43 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.06 Total: 0.07 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.07 Total: 4.30 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.52 Total: -52.35 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.27 Total: -15.42 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.20 -9.23 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071183769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.962 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds