Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.51403 * 2 1 4 4 C 1.53282 * 109.51622 * 239.89777 * 2 1 3 5 5 N 1.47171 * 108.51856 * 186.99529 * 4 2 1 6 6 C 1.34783 * 121.07260 * 231.28351 * 5 4 2 7 7 O 1.21283 * 120.00033 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.99963 * 0.02562 * 6 5 4 9 9 F 1.39897 * 110.01773 * 58.60805 * 8 6 5 10 10 C 1.54269 * 110.03215 * 297.16235 * 8 6 5 11 11 C 1.54889 * 104.19735 * 217.10675 * 10 8 6 12 12 C 1.54892 * 102.74643 * 37.94023 * 11 10 8 13 13 C 1.53882 * 110.03197 * 179.97438 * 8 6 5 14 14 C 1.47316 * 117.85254 * 51.30633 * 5 4 2 15 15 C 1.52362 * 108.46622 * 310.86869 * 14 5 4 16 16 C 1.54359 * 110.41449 * 286.28654 * 15 14 5 17 17 C 1.54468 * 102.88156 * 207.65301 * 16 15 14 18 18 N 1.47083 * 107.29342 * 21.49180 * 17 16 15 19 19 C 1.36934 * 125.62975 * 181.03238 * 18 17 16 20 20 H 1.08000 * 120.00354 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00082 * 359.96119 * 19 18 17 22 22 N 1.31623 * 120.00124 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00266 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46964 * 59.99768 * 23 21 19 25 25 H 1.48505 * 109.47188 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47089 * 299.99970 * 23 21 19 27 27 C 1.47572 * 108.74198 * 0.99565 * 18 17 16 28 28 O 1.41876 * 111.48271 * 49.85832 * 15 14 5 29 29 H 1.09002 * 109.47153 * 180.10259 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.10450 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.10432 * 1 2 3 32 32 H 1.09006 * 109.62271 * 306.70244 * 4 2 1 33 33 H 1.08990 * 109.62646 * 67.08223 * 4 2 1 34 34 H 1.09002 * 110.48453 * 335.78612 * 10 8 6 35 35 H 1.09003 * 110.48015 * 98.42699 * 10 8 6 36 36 H 1.08997 * 110.75513 * 279.63127 * 11 10 8 37 37 H 1.08994 * 110.75566 * 156.25776 * 11 10 8 38 38 H 1.09000 * 110.48249 * 203.37762 * 12 11 10 39 39 H 1.09005 * 110.48320 * 80.73727 * 12 11 10 40 40 H 1.08998 * 110.03181 * 238.56849 * 13 8 6 41 41 H 1.08997 * 110.02778 * 359.95027 * 13 8 6 42 42 H 1.09000 * 109.63551 * 70.55887 * 14 5 4 43 43 H 1.09000 * 109.63879 * 191.17381 * 14 5 4 44 44 H 1.08992 * 110.73642 * 326.00434 * 16 15 14 45 45 H 1.09003 * 110.72931 * 89.31025 * 16 15 14 46 46 H 1.08998 * 109.87643 * 262.06970 * 17 16 15 47 47 H 1.08992 * 109.99952 * 140.98553 * 17 16 15 48 48 H 0.96996 * 120.00376 * 179.97438 * 22 21 19 49 49 H 1.08991 * 110.37565 * 217.85271 * 27 18 17 50 50 H 1.09004 * 110.37206 * 95.50835 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2499 5 7 3.5037 -0.8605 -1.1455 6 6 4.3122 -0.4706 -2.1509 7 8 5.5143 -0.5911 -2.0440 8 6 3.7226 0.1162 -3.4076 9 9 2.9701 1.2541 -3.0975 10 6 2.8348 -0.9297 -4.1131 11 6 3.0856 -0.6850 -5.6219 12 6 4.5990 -0.3583 -5.6682 13 6 4.8444 0.4800 -4.3962 14 6 4.0546 -1.4370 0.0932 15 6 3.4214 -0.7232 1.2810 16 6 4.0047 0.6983 1.4283 17 6 3.8578 0.9758 2.9408 18 7 3.7480 -0.3265 3.6156 19 6 3.5836 -0.5160 4.9617 20 1 3.5129 -1.5168 5.3615 21 6 3.5078 0.5781 5.8125 22 7 3.5946 1.7978 5.3255 23 14 3.2842 0.3196 7.6491 24 1 4.4243 -0.4697 8.1803 25 1 3.2341 1.6373 8.3320 26 1 2.0169 -0.4143 7.8949 27 6 3.8436 -1.3951 2.6023 28 8 2.0080 -0.6775 1.1665 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3633 0.5122 -0.8909 31 1 -0.3634 0.5155 0.8891 32 1 1.5860 -1.7127 -1.3129 33 1 1.7876 -0.1466 -2.1382 34 1 3.1391 -1.9386 -3.8345 35 1 1.7852 -0.7657 -3.8693 36 1 2.4970 0.1598 -5.9793 37 1 2.8662 -1.5823 -6.2004 38 1 4.8367 0.2226 -6.5594 39 1 5.1881 -1.2750 -5.6407 40 1 4.8015 1.5427 -4.6349 41 1 5.8152 0.2330 -3.9666 42 1 3.8206 -2.5007 0.1378 43 1 5.1352 -1.2954 0.1142 44 1 5.0536 0.7176 1.1326 45 1 3.4254 1.4153 0.8465 46 1 2.9592 1.5650 3.1238 47 1 4.7331 1.5111 3.3083 48 1 3.5414 2.5624 5.9199 49 1 3.1644 -2.2117 2.8469 50 1 4.8681 -1.7606 2.5318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071183769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -112.164580 kcal Electronic energy + Delta-G solvation = -32466.176095 eV Core-core repulsion = 28214.889710 eV Total energy + Delta-G solvation = -4251.286385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.12283 -41.92080 -40.36731 -38.06269 -37.83900 -35.99419 -34.81267 -32.98021 -31.28747 -30.61072 -29.88262 -29.45947 -27.69931 -27.14650 -25.58515 -23.26126 -22.78457 -22.06961 -21.88487 -20.72802 -20.21158 -18.99066 -18.93919 -18.10035 -17.55438 -17.19264 -16.79535 -16.48084 -16.31787 -15.96581 -15.86566 -15.58026 -15.30035 -15.16321 -15.02631 -14.68826 -14.25790 -14.10898 -14.05730 -13.85487 -13.64303 -13.23460 -13.14579 -13.05998 -12.97502 -12.80887 -12.73976 -12.53683 -12.30574 -12.17053 -12.14956 -12.10594 -12.06183 -11.89818 -11.87924 -11.73991 -11.54280 -11.43008 -10.99398 -10.79080 -10.71667 -9.66996 -8.93901 -7.85725 -5.22148 1.17186 1.44496 1.49056 1.54956 1.57771 2.48061 2.56406 2.89934 3.18004 3.31166 3.32837 3.41764 3.52374 3.55759 3.77476 3.81287 3.87757 3.98210 4.12758 4.16940 4.25816 4.31699 4.34664 4.37301 4.41451 4.42730 4.53573 4.63943 4.66268 4.71025 4.73426 4.79912 4.80937 4.90596 4.96556 4.99959 5.05534 5.07410 5.10322 5.17210 5.25032 5.29470 5.38654 5.40847 5.53573 5.67039 6.07358 6.14920 6.33687 6.75362 7.06393 7.73216 8.38388 9.25151 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.003032 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.949908 B = 9231.110489 C = 9597.061423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.045 0.955 4 C 0.074 3.926 5 N -0.599 5.599 6 C 0.499 3.501 7 O -0.557 6.557 8 C 0.101 3.899 9 F -0.196 7.196 10 C -0.141 4.141 11 C -0.117 4.117 12 C -0.118 4.118 13 C -0.147 4.147 14 C 0.104 3.896 15 C 0.109 3.891 16 C -0.151 4.151 17 C 0.200 3.800 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.955 5.955 23 Si 0.983 3.017 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.147 3.853 28 O -0.367 6.367 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.007 0.993 47 H 0.005 0.995 48 H 0.246 0.754 49 H 0.056 0.944 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 -6.926 -26.227 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 H 0.063 0.937 4 C -0.048 4.048 5 N -0.331 5.331 6 C 0.286 3.714 7 O -0.435 6.435 8 C 0.079 3.921 9 F -0.176 7.176 10 C -0.179 4.179 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.185 4.185 14 C -0.019 4.019 15 C 0.067 3.933 16 C -0.190 4.190 17 C 0.075 3.925 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.811 3.189 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.201 1.201 27 C 0.021 3.979 28 O -0.287 6.287 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.025 0.975 47 H 0.023 0.977 48 H 0.055 0.945 49 H 0.075 0.925 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.887 -6.929 -25.833 27.189 hybrid contribution 0.365 0.851 1.631 1.875 sum -4.521 -6.078 -24.203 25.360 Atomic orbital electron populations 1.21711 0.90034 1.04033 1.03445 1.22721 0.97217 0.95065 0.84736 0.93676 1.22958 0.78127 1.03652 1.00013 1.48219 1.08084 1.61023 1.15765 1.21320 0.86675 0.78109 0.85282 1.90679 1.15725 1.56526 1.80610 1.21964 0.93379 0.84374 0.92341 1.92883 1.77570 1.52895 1.94262 1.23191 1.00135 0.97479 0.97047 1.22552 0.95618 1.03511 0.93719 1.22379 0.97164 0.99848 0.96189 1.22796 0.97727 1.02562 0.95415 1.22006 0.99687 0.98329 0.81860 1.22099 0.81808 0.94549 0.94825 1.23166 1.00447 0.97851 0.97502 1.20727 0.97134 0.87255 0.87421 1.44696 1.85768 1.01543 1.02674 1.19457 1.42120 0.93352 0.82039 0.89530 1.25718 1.02568 0.95023 1.02863 1.70205 1.58031 0.97624 1.34535 0.85084 0.78372 0.76278 0.79177 1.20061 1.22164 1.20117 1.21540 0.98403 0.91718 0.86190 1.87876 1.19525 1.77038 1.44230 0.90371 0.87855 0.93158 0.87697 0.86122 0.89095 0.87389 0.89872 0.88485 0.89170 0.90974 0.89457 0.90135 0.88264 0.89052 0.91491 0.91399 0.97460 0.97713 0.94493 0.92543 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.57 71.98 0.69 -2.11 16 2 C 0.06 1.64 3.20 30.69 0.10 1.74 16 3 H 0.05 1.41 6.25 -2.38 -0.01 1.40 16 4 C 0.07 1.51 4.90 86.35 0.42 1.93 16 5 N -0.60 -15.49 2.95 -818.68 -2.42 -17.91 16 6 C 0.50 13.46 6.71 87.66 0.59 14.04 16 7 O -0.56 -18.78 14.70 -3.04 -0.04 -18.83 16 8 C 0.10 2.00 1.08 -10.81 -0.01 1.99 16 9 F -0.20 -4.34 15.06 44.97 0.68 -3.66 16 10 C -0.14 -1.71 4.98 31.67 0.16 -1.55 16 11 C -0.12 -1.02 6.91 31.89 0.22 -0.80 16 12 C -0.12 -1.38 6.83 31.68 0.22 -1.16 16 13 C -0.15 -2.71 6.25 31.34 0.20 -2.51 16 14 C 0.10 3.09 5.29 86.01 0.46 3.55 16 15 C 0.11 4.00 0.84 -10.16 -0.01 3.99 16 16 C -0.15 -6.36 5.88 31.55 0.19 -6.18 16 17 C 0.20 10.78 5.39 86.77 0.47 11.25 16 18 N -0.62 -33.73 3.40 -692.74 -2.36 -36.09 16 19 C -0.24 -14.04 10.28 84.03 0.86 -13.18 16 20 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 22 N -0.95 -60.14 10.31 21.65 0.22 -59.91 16 23 Si 0.98 47.24 29.55 68.60 2.03 49.26 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 C 0.15 6.27 6.42 86.56 0.56 6.82 16 28 O -0.37 -13.33 9.92 -148.95 -1.48 -14.80 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.12 1.95 3.76 -2.39 -0.01 1.94 16 34 H 0.09 1.09 7.85 -2.39 -0.02 1.07 16 35 H 0.11 0.94 6.72 -2.39 -0.02 0.93 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.09 1.53 8.02 -2.39 -0.02 1.51 16 41 H 0.08 1.88 6.39 -2.39 -0.02 1.86 16 42 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.09 2.96 6.85 -2.39 -0.02 2.94 16 44 H 0.07 2.76 7.82 -2.39 -0.02 2.74 16 45 H 0.07 2.75 6.10 -2.39 -0.01 2.74 16 46 H 0.01 0.44 7.39 -2.39 -0.02 0.42 16 47 H 0.00 0.28 7.49 -2.39 -0.02 0.26 16 48 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.05 2.00 7.99 -2.38 -0.02 1.98 16 Total: -1.00 -76.28 377.42 3.13 -73.15 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.94 Total: 14.59 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.56 Total: 14.20 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.55 Total: -113.91 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.52 Total: -33.63 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.68 Total: -3.66 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -76.28 3.13 -73.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071183769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.017 kcal (2) G-P(sol) polarization free energy of solvation -76.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds