Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.51129 * 2 1 4 4 C 1.53747 * 109.47339 * 120.26224 * 2 1 3 5 5 N 1.47161 * 108.24707 * 173.08592 * 4 2 1 6 6 C 1.34779 * 121.05668 * 128.74497 * 5 4 2 7 7 O 1.21278 * 120.00476 * 179.71696 * 6 5 4 8 8 C 1.50704 * 119.99742 * 359.72375 * 6 5 4 9 9 F 1.39899 * 110.53794 * 312.60529 * 8 6 5 10 10 C 1.54270 * 110.48466 * 189.99850 * 8 6 5 11 11 C 1.53869 * 106.63967 * 217.73352 * 10 8 6 12 12 C 1.54268 * 106.60115 * 359.97438 * 11 10 8 13 13 C 1.54895 * 104.19476 * 23.60777 * 12 11 10 14 14 C 1.47292 * 117.88838 * 308.47354 * 5 4 2 15 15 C 1.52516 * 108.46149 * 49.60671 * 14 5 4 16 16 C 1.54525 * 110.02966 * 187.28288 * 15 14 5 17 17 C 1.55020 * 101.53405 * 206.94259 * 16 15 14 18 18 N 1.47484 * 104.89977 * 36.37217 * 17 16 15 19 19 C 1.36930 * 125.66442 * 155.93000 * 18 17 16 20 20 H 1.07999 * 119.99973 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00145 * 0.03349 * 19 18 17 22 22 N 1.31619 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47035 * 59.99992 * 23 21 19 25 25 H 1.48511 * 109.46894 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47325 * 299.99556 * 23 21 19 27 27 C 1.47186 * 108.66945 * 335.98272 * 18 17 16 28 28 O 1.42051 * 111.14058 * 309.79803 * 15 14 5 29 29 H 1.08994 * 109.47100 * 180.10002 * 1 2 3 30 30 H 1.09003 * 109.47381 * 300.10717 * 1 2 3 31 31 H 1.09005 * 109.46576 * 60.10751 * 1 2 3 32 32 H 1.09003 * 109.80050 * 53.43111 * 4 2 1 33 33 H 1.08998 * 109.70632 * 292.68231 * 4 2 1 34 34 H 1.09002 * 110.03399 * 98.42351 * 10 8 6 35 35 H 1.08995 * 110.02943 * 337.04251 * 10 8 6 36 36 H 1.08999 * 110.03405 * 119.26051 * 11 10 8 37 37 H 1.08996 * 110.03529 * 240.68999 * 11 10 8 38 38 H 1.08997 * 110.48788 * 142.28685 * 12 11 10 39 39 H 1.09001 * 110.48482 * 264.93365 * 12 11 10 40 40 H 1.09001 * 110.75082 * 80.37254 * 13 12 11 41 41 H 1.08991 * 110.75596 * 203.55944 * 13 12 11 42 42 H 1.08998 * 109.63640 * 169.29699 * 14 5 4 43 43 H 1.09000 * 109.63507 * 289.70946 * 14 5 4 44 44 H 1.08993 * 111.01624 * 325.01019 * 16 15 14 45 45 H 1.09002 * 111.01009 * 88.84369 * 16 15 14 46 46 H 1.08999 * 110.35365 * 155.23061 * 17 16 15 47 47 H 1.09001 * 110.35285 * 277.52139 * 17 16 15 48 48 H 0.96998 * 119.99915 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.90879 * 242.13681 * 27 18 17 50 50 H 1.09004 * 109.90816 * 120.87854 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0426 -0.7305 1.2520 5 7 3.5043 -0.8617 1.1429 6 6 4.3141 -0.4735 2.1480 7 8 5.5159 -0.5950 2.0398 8 6 3.7262 0.1113 3.4063 9 9 2.7741 1.0881 3.0953 10 6 4.8377 0.7048 4.2964 11 6 4.4495 0.3936 5.7524 12 6 3.1147 -0.3780 5.6974 13 6 3.0950 -1.0022 4.2798 14 6 4.0538 -1.4362 -0.0970 15 6 3.4231 -0.7157 -1.2841 16 6 3.8335 -1.4089 -2.6028 17 6 3.7397 -0.2358 -3.6118 18 7 4.2006 0.9474 -2.8616 19 6 4.7280 2.0854 -3.4110 20 1 5.0375 2.8998 -2.7727 21 6 4.8646 2.1925 -4.7882 22 7 4.4876 1.1998 -5.5660 23 14 5.5834 3.7453 -5.5376 24 1 6.9612 3.9511 -5.0234 25 1 5.6224 3.6092 -7.0160 26 1 4.7384 4.9096 -5.1695 27 6 4.0006 0.7013 -1.4243 28 8 2.0080 -0.6765 -1.1666 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3634 0.5155 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 1.5896 -1.7200 1.3135 33 1 1.7920 -0.1538 2.1424 34 1 4.8986 1.7830 4.1485 35 1 5.7946 0.2409 4.0577 36 1 5.2177 -0.2222 6.2202 37 1 4.3220 1.3206 6.3112 38 1 3.0935 -1.1584 6.4581 39 1 2.2743 0.3041 5.8256 40 1 3.7012 -1.9075 4.2480 41 1 2.0730 -1.2121 3.9644 42 1 5.1349 -1.2981 -0.1169 43 1 3.8194 -2.4997 -0.1432 44 1 4.8520 -1.7921 -2.5424 45 1 3.1337 -2.2039 -2.8606 46 1 4.3896 -0.4190 -4.4675 47 1 2.7092 -0.0991 -3.9396 48 1 4.5827 1.2748 -6.5284 49 1 3.2996 1.4298 -1.0170 50 1 4.9542 0.7669 -0.9004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071183771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -90.326986 kcal Electronic energy + Delta-G solvation = -32537.625255 eV Core-core repulsion = 28287.285819 eV Total energy + Delta-G solvation = -4250.339436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.28264 -40.59111 -39.07676 -37.10869 -36.33968 -34.70369 -33.14133 -31.30489 -29.89685 -29.24080 -29.12601 -28.00161 -26.52408 -25.67192 -23.91739 -22.06779 -21.67192 -21.04827 -20.27741 -19.63380 -18.88286 -17.82982 -17.01050 -16.92416 -16.36931 -16.18427 -15.65866 -15.22718 -14.93136 -14.72968 -14.66318 -14.40053 -14.00198 -13.84427 -13.63769 -13.40445 -13.34247 -12.83188 -12.62300 -12.28265 -12.24727 -12.09693 -12.02679 -11.88232 -11.64771 -11.57696 -11.51540 -11.47385 -11.15446 -11.04039 -10.89593 -10.82279 -10.79784 -10.45941 -10.32412 -10.10866 -9.95311 -9.65370 -9.56674 -9.52145 -8.61290 -8.40765 -6.79935 -5.61626 -3.03013 2.29134 2.69116 3.43571 3.47168 3.48822 3.80288 3.86738 3.88573 4.09437 4.30512 4.50733 4.68784 4.77166 4.90138 4.94624 4.97707 5.03318 5.06045 5.13843 5.19973 5.24975 5.34306 5.42551 5.47462 5.51167 5.52428 5.59435 5.63292 5.63639 5.69890 5.77618 5.85393 5.89256 5.90021 5.96757 6.06515 6.16594 6.26032 6.27406 6.47988 6.55525 6.63899 6.71383 7.19935 7.58984 7.65137 7.66360 7.88062 7.89290 8.38571 9.25491 9.85510 10.50859 11.42360 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003450 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.196417 B = 8115.011326 C = 8788.614751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.070 0.930 4 C 0.060 3.940 5 N -0.599 5.599 6 C 0.507 3.493 7 O -0.522 6.522 8 C 0.100 3.900 9 F -0.184 7.184 10 C -0.137 4.137 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.138 4.138 14 C 0.096 3.904 15 C 0.095 3.905 16 C -0.130 4.130 17 C 0.158 3.842 18 N -0.600 5.600 19 C -0.222 4.222 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.286 1.286 27 C 0.122 3.878 28 O -0.354 6.354 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.018 0.982 48 H 0.253 0.747 49 H 0.024 0.976 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -7.162 21.868 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.088 0.912 4 C -0.063 4.063 5 N -0.332 5.332 6 C 0.292 3.708 7 O -0.398 6.398 8 C 0.078 3.922 9 F -0.164 7.164 10 C -0.175 4.175 11 C -0.160 4.160 12 C -0.160 4.160 13 C -0.176 4.176 14 C -0.026 4.026 15 C 0.055 3.945 16 C -0.169 4.169 17 C 0.033 3.967 18 N -0.326 5.326 19 C -0.350 4.350 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.212 1.212 27 C -0.004 4.004 28 O -0.273 6.273 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.125 0.875 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.042 0.958 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.061 -7.187 21.440 23.411 hybrid contribution 0.269 1.065 -0.269 1.131 sum -5.792 -6.122 21.171 22.786 Atomic orbital electron populations 1.21685 0.92425 1.02793 1.02838 1.22508 0.95264 0.96361 0.84682 0.91227 1.23076 0.79516 1.02186 1.01535 1.48174 1.07124 1.61443 1.16433 1.20576 0.87036 0.78785 0.84360 1.90716 1.14033 1.55256 1.79787 1.21960 0.88665 0.87940 0.93630 1.92801 1.65436 1.64240 1.93959 1.22678 0.98664 1.02606 0.93577 1.22143 0.97318 1.00732 0.95850 1.22383 0.98172 0.99706 0.95784 1.23130 1.02099 0.97203 0.95168 1.22335 1.00831 0.97240 0.82174 1.22288 0.80834 0.96667 0.94751 1.23012 1.00250 0.99843 0.93766 1.21944 0.98804 0.82105 0.93845 1.44482 1.73068 1.16121 0.98937 1.19019 1.33145 0.92565 0.90305 0.90707 1.24768 1.01631 0.98314 0.95839 1.69779 1.53194 1.30687 1.03409 0.86146 0.78915 0.82310 0.78095 1.21151 1.21518 1.21248 1.21709 0.97060 0.92981 0.88684 1.87855 1.20374 1.76751 1.42289 0.91846 0.91137 0.91131 0.90641 0.87280 0.89811 0.87894 0.91014 0.91045 0.90586 0.90767 0.89117 0.89468 0.87873 0.90664 0.90584 0.90990 0.87458 0.96445 0.93673 0.95789 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 37.16 0.36 -1.24 16 2 C 0.07 1.03 3.19 -26.34 -0.08 0.95 16 3 H 0.07 1.17 6.25 -51.93 -0.32 0.84 16 4 C 0.06 0.73 5.15 -3.29 -0.02 0.71 16 5 N -0.60 -8.72 2.94 -172.35 -0.51 -9.22 16 6 C 0.51 7.49 6.83 -10.98 -0.07 7.42 16 7 O -0.52 -9.24 14.90 5.56 0.08 -9.16 16 8 C 0.10 1.14 0.91 -90.07 -0.08 1.05 16 9 F -0.18 -2.25 14.28 2.25 0.03 -2.22 16 10 C -0.14 -1.43 6.06 -25.61 -0.16 -1.58 16 11 C -0.12 -0.91 6.80 -25.62 -0.17 -1.09 16 12 C -0.12 -0.82 6.83 -25.07 -0.17 -0.99 16 13 C -0.14 -1.13 5.70 -24.70 -0.14 -1.27 16 14 C 0.10 1.55 5.20 -3.86 -0.02 1.53 16 15 C 0.10 1.79 0.81 -89.72 -0.07 1.72 16 16 C -0.13 -2.55 6.21 -24.86 -0.15 -2.71 16 17 C 0.16 3.98 5.89 -2.44 -0.01 3.96 16 18 N -0.60 -16.16 3.40 -170.24 -0.58 -16.74 16 19 C -0.22 -6.46 10.28 -15.06 -0.15 -6.61 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -27.40 10.09 55.49 0.56 -26.84 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.12 2.78 6.34 -3.33 -0.02 2.76 16 28 O -0.35 -6.42 9.89 -35.23 -0.35 -6.76 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 1.16 3.98 -51.93 -0.21 0.96 16 34 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.10 1.20 6.75 -51.93 -0.35 0.85 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 41 H 0.09 0.62 7.21 -51.93 -0.37 0.24 16 42 H 0.10 1.81 6.82 -51.93 -0.35 1.46 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.42 8.01 -51.93 -0.42 1.00 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.11 2.99 5.88 -51.93 -0.31 2.68 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.02 0.57 6.03 -51.93 -0.31 0.26 16 50 H 0.03 0.67 7.61 -51.93 -0.40 0.27 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -33.14 378.03 -9.24 -42.37 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.08 Total: 1.02 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.08 Total: 4.21 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.53 Total: -52.80 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.27 Total: -15.92 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.03 Total: -2.22 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.14 -9.24 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071183771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.952 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds