Wall clock time and date at job start Sat Apr 11 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.51129 * 2 1 4 4 C 1.53747 * 109.47339 * 120.26224 * 2 1 3 5 5 N 1.47161 * 108.24707 * 173.08592 * 4 2 1 6 6 C 1.34779 * 121.05668 * 128.74497 * 5 4 2 7 7 O 1.21278 * 120.00476 * 179.71696 * 6 5 4 8 8 C 1.50704 * 119.99742 * 359.72375 * 6 5 4 9 9 F 1.39899 * 110.53794 * 312.60529 * 8 6 5 10 10 C 1.54270 * 110.48466 * 189.99850 * 8 6 5 11 11 C 1.53869 * 106.63967 * 217.73352 * 10 8 6 12 12 C 1.54268 * 106.60115 * 359.97438 * 11 10 8 13 13 C 1.54895 * 104.19476 * 23.60777 * 12 11 10 14 14 C 1.47292 * 117.88838 * 308.47354 * 5 4 2 15 15 C 1.52516 * 108.46149 * 49.60671 * 14 5 4 16 16 C 1.54525 * 110.02966 * 187.28288 * 15 14 5 17 17 C 1.55020 * 101.53405 * 206.94259 * 16 15 14 18 18 N 1.47484 * 104.89977 * 36.37217 * 17 16 15 19 19 C 1.36930 * 125.66442 * 155.93000 * 18 17 16 20 20 H 1.07999 * 119.99973 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00145 * 0.03349 * 19 18 17 22 22 N 1.31619 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47035 * 59.99992 * 23 21 19 25 25 H 1.48511 * 109.46894 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47325 * 299.99556 * 23 21 19 27 27 C 1.47186 * 108.66945 * 335.98272 * 18 17 16 28 28 O 1.42051 * 111.14058 * 309.79803 * 15 14 5 29 29 H 1.08994 * 109.47100 * 180.10002 * 1 2 3 30 30 H 1.09003 * 109.47381 * 300.10717 * 1 2 3 31 31 H 1.09005 * 109.46576 * 60.10751 * 1 2 3 32 32 H 1.09003 * 109.80050 * 53.43111 * 4 2 1 33 33 H 1.08998 * 109.70632 * 292.68231 * 4 2 1 34 34 H 1.09002 * 110.03399 * 98.42351 * 10 8 6 35 35 H 1.08995 * 110.02943 * 337.04251 * 10 8 6 36 36 H 1.08999 * 110.03405 * 119.26051 * 11 10 8 37 37 H 1.08996 * 110.03529 * 240.68999 * 11 10 8 38 38 H 1.08997 * 110.48788 * 142.28685 * 12 11 10 39 39 H 1.09001 * 110.48482 * 264.93365 * 12 11 10 40 40 H 1.09001 * 110.75082 * 80.37254 * 13 12 11 41 41 H 1.08991 * 110.75596 * 203.55944 * 13 12 11 42 42 H 1.08998 * 109.63640 * 169.29699 * 14 5 4 43 43 H 1.09000 * 109.63507 * 289.70946 * 14 5 4 44 44 H 1.08993 * 111.01624 * 325.01019 * 16 15 14 45 45 H 1.09002 * 111.01009 * 88.84369 * 16 15 14 46 46 H 1.08999 * 110.35365 * 155.23061 * 17 16 15 47 47 H 1.09001 * 110.35285 * 277.52139 * 17 16 15 48 48 H 0.96998 * 119.99915 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.90879 * 242.13681 * 27 18 17 50 50 H 1.09004 * 109.90816 * 120.87854 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0426 -0.7305 1.2520 5 7 3.5043 -0.8617 1.1429 6 6 4.3141 -0.4735 2.1480 7 8 5.5159 -0.5950 2.0398 8 6 3.7262 0.1113 3.4063 9 9 2.7741 1.0881 3.0953 10 6 4.8377 0.7048 4.2964 11 6 4.4495 0.3936 5.7524 12 6 3.1147 -0.3780 5.6974 13 6 3.0950 -1.0022 4.2798 14 6 4.0538 -1.4362 -0.0970 15 6 3.4231 -0.7157 -1.2841 16 6 3.8335 -1.4089 -2.6028 17 6 3.7397 -0.2358 -3.6118 18 7 4.2006 0.9474 -2.8616 19 6 4.7280 2.0854 -3.4110 20 1 5.0375 2.8998 -2.7727 21 6 4.8646 2.1925 -4.7882 22 7 4.4876 1.1998 -5.5660 23 14 5.5834 3.7453 -5.5376 24 1 6.9612 3.9511 -5.0234 25 1 5.6224 3.6092 -7.0160 26 1 4.7384 4.9096 -5.1695 27 6 4.0006 0.7013 -1.4243 28 8 2.0080 -0.6765 -1.1666 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3634 0.5155 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 1.5896 -1.7200 1.3135 33 1 1.7920 -0.1538 2.1424 34 1 4.8986 1.7830 4.1485 35 1 5.7946 0.2409 4.0577 36 1 5.2177 -0.2222 6.2202 37 1 4.3220 1.3206 6.3112 38 1 3.0935 -1.1584 6.4581 39 1 2.2743 0.3041 5.8256 40 1 3.7012 -1.9075 4.2480 41 1 2.0730 -1.2121 3.9644 42 1 5.1349 -1.2981 -0.1169 43 1 3.8194 -2.4997 -0.1432 44 1 4.8520 -1.7921 -2.5424 45 1 3.1337 -2.2039 -2.8606 46 1 4.3896 -0.4190 -4.4675 47 1 2.7092 -0.0991 -3.9396 48 1 4.5827 1.2748 -6.5284 49 1 3.2996 1.4298 -1.0170 50 1 4.9542 0.7669 -0.9004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071183771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:59 Heat of formation + Delta-G solvation = -111.020487 kcal Electronic energy + Delta-G solvation = -32538.522592 eV Core-core repulsion = 28287.285819 eV Total energy + Delta-G solvation = -4251.236773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.22155 -41.88510 -40.34789 -38.08620 -37.80840 -35.97908 -34.89240 -33.00299 -31.21842 -30.65131 -29.91247 -29.34310 -27.82623 -27.22839 -25.62000 -23.22469 -22.91934 -22.11423 -21.67553 -20.77393 -20.20823 -19.10365 -18.81122 -18.14675 -17.68865 -17.15609 -16.88391 -16.51823 -16.30175 -16.08969 -15.90374 -15.58251 -15.42459 -15.20684 -15.06027 -14.66400 -14.27622 -14.17437 -13.96694 -13.82228 -13.51598 -13.26992 -13.12344 -13.02696 -12.98124 -12.80477 -12.69720 -12.61072 -12.34004 -12.28191 -12.19837 -12.16613 -12.06660 -11.99097 -11.94583 -11.68397 -11.48174 -11.36309 -11.03171 -10.80120 -10.75396 -9.67787 -8.98317 -7.83653 -5.29575 1.16058 1.41433 1.45465 1.52153 1.59102 2.43650 2.54337 2.88035 3.12979 3.24283 3.28079 3.40841 3.53214 3.58035 3.71159 3.80575 3.90857 4.02440 4.12547 4.14534 4.27183 4.32017 4.32544 4.36613 4.41362 4.49033 4.53348 4.61181 4.63064 4.63884 4.73894 4.78088 4.86631 4.94153 4.94568 4.95766 5.03932 5.05280 5.12682 5.17750 5.24777 5.28240 5.36186 5.38437 5.56025 5.73096 6.07323 6.22751 6.26751 6.75075 7.03687 7.68277 8.33148 9.17964 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003450 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.196417 B = 8115.011326 C = 8788.614751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.061 3.939 3 H 0.038 0.962 4 C 0.066 3.934 5 N -0.603 5.603 6 C 0.499 3.501 7 O -0.560 6.560 8 C 0.098 3.902 9 F -0.189 7.189 10 C -0.141 4.141 11 C -0.119 4.119 12 C -0.117 4.117 13 C -0.132 4.132 14 C 0.104 3.896 15 C 0.109 3.891 16 C -0.116 4.116 17 C 0.162 3.838 18 N -0.621 5.621 19 C -0.251 4.251 20 H 0.071 0.929 21 C -0.060 4.060 22 N -0.944 5.944 23 Si 0.983 3.017 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.279 1.279 27 C 0.124 3.876 28 O -0.368 6.368 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.079 0.921 47 H -0.013 1.013 48 H 0.251 0.749 49 H 0.013 0.987 50 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -8.252 24.393 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 H 0.056 0.944 4 C -0.055 4.055 5 N -0.334 5.334 6 C 0.286 3.714 7 O -0.439 6.439 8 C 0.076 3.924 9 F -0.170 7.170 10 C -0.180 4.180 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.170 4.170 14 C -0.019 4.019 15 C 0.068 3.932 16 C -0.155 4.155 17 C 0.037 3.963 18 N -0.348 5.348 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.253 4.253 22 N -0.593 5.593 23 Si 0.810 3.190 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.205 1.205 27 C -0.002 4.002 28 O -0.287 6.287 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.097 0.903 47 H 0.005 0.995 48 H 0.060 0.940 49 H 0.030 0.970 50 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.569 -8.280 23.997 26.489 hybrid contribution 0.718 1.483 -1.081 1.971 sum -6.851 -6.796 22.916 24.865 Atomic orbital electron populations 1.21703 0.89622 1.04234 1.03454 1.22789 0.97406 0.94788 0.84752 0.94384 1.23217 0.77881 1.03814 1.00624 1.48297 1.08264 1.61114 1.15740 1.21279 0.86683 0.78113 0.85303 1.90694 1.15748 1.56711 1.80708 1.22101 0.89139 0.88943 0.92194 1.92786 1.65520 1.64649 1.94003 1.22714 0.97730 1.01793 0.95723 1.22156 0.98299 1.01684 0.93495 1.22409 0.97586 1.00204 0.95237 1.23200 1.02739 0.95911 0.95167 1.22117 0.99480 0.98453 0.81837 1.22017 0.81672 0.93834 0.95657 1.22871 1.01870 0.98264 0.92482 1.21705 0.96043 0.83916 0.94624 1.44786 1.72963 1.16192 1.00820 1.19342 1.34009 0.93597 0.91007 0.91097 1.25647 1.01973 1.01599 0.96074 1.70024 1.53647 1.32286 1.03339 0.85096 0.78312 0.78500 0.77051 1.20291 1.21129 1.20511 1.21778 0.96200 0.95807 0.86373 1.87836 1.19404 1.77006 1.44461 0.89939 0.88134 0.92934 0.87539 0.85432 0.90744 0.89742 0.90081 0.90040 0.88361 0.90097 0.88851 0.87627 0.89792 0.87601 0.89434 0.88297 0.90342 0.99471 0.93956 0.96950 0.96930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.57 71.98 0.69 -2.03 16 2 C 0.06 1.70 3.19 30.85 0.10 1.80 16 3 H 0.04 1.30 6.25 -2.39 -0.01 1.29 16 4 C 0.07 1.43 5.15 86.50 0.45 1.87 16 5 N -0.60 -16.75 2.94 -817.58 -2.41 -19.16 16 6 C 0.50 14.51 6.83 87.66 0.60 15.11 16 7 O -0.56 -20.28 14.90 -3.02 -0.05 -20.33 16 8 C 0.10 2.09 0.91 -10.44 -0.01 2.08 16 9 F -0.19 -4.34 14.28 44.97 0.64 -3.69 16 10 C -0.14 -2.87 6.06 31.32 0.19 -2.68 16 11 C -0.12 -1.49 6.80 31.32 0.21 -1.28 16 12 C -0.12 -1.13 6.83 31.67 0.22 -0.92 16 13 C -0.13 -1.74 5.70 31.91 0.18 -1.56 16 14 C 0.10 3.25 5.20 86.07 0.45 3.70 16 15 C 0.11 4.12 0.81 -10.21 -0.01 4.11 16 16 C -0.12 -4.57 6.21 31.80 0.20 -4.38 16 17 C 0.16 8.50 5.89 86.88 0.51 9.02 16 18 N -0.62 -35.04 3.40 -692.51 -2.36 -37.40 16 19 C -0.25 -15.19 10.28 84.03 0.86 -14.32 16 20 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 22 N -0.94 -57.96 10.09 21.65 0.22 -57.74 16 23 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.12 5.91 6.34 86.47 0.55 6.46 16 28 O -0.37 -13.08 9.89 -148.97 -1.47 -14.55 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.13 2.31 3.98 -2.39 -0.01 2.30 16 34 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 35 H 0.08 2.03 6.75 -2.39 -0.02 2.01 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 41 H 0.11 1.01 7.21 -2.39 -0.02 0.99 16 42 H 0.08 2.98 6.82 -2.39 -0.02 2.97 16 43 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.09 3.23 8.01 -2.39 -0.02 3.21 16 45 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.08 4.58 5.88 -2.39 -0.01 4.56 16 47 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.01 0.63 6.03 -2.39 -0.01 0.61 16 50 H 0.01 0.64 7.61 -2.39 -0.02 0.62 16 Total: -1.00 -76.53 378.03 3.19 -73.34 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.94 Total: 16.07 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.65 Total: 13.91 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -4.54 Total: -114.29 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.52 Total: -34.88 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.64 Total: -3.69 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -76.53 3.19 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071183771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.683 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds