Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 102.99852 * 2 1 4 4 C 1.50701 * 109.46958 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00419 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99903 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63182 * 180.02562 * 6 4 3 8 8 C 1.53188 * 108.77739 * 233.58689 * 7 6 4 9 9 C 1.53044 * 109.31326 * 305.36503 * 8 7 6 10 10 C 1.52997 * 109.46309 * 181.38561 * 9 8 7 11 11 H 1.08999 * 110.21134 * 299.10730 * 10 9 8 12 12 C 1.50125 * 110.36940 * 61.11380 * 10 9 8 13 13 C 1.54834 * 110.81889 * 216.72202 * 12 10 9 14 14 C 1.54412 * 110.06701 * 321.07345 * 13 12 10 15 15 N 1.43430 * 116.39415 * 318.65382 * 14 13 12 16 16 C 1.36942 * 120.53329 * 271.73165 * 15 14 13 17 17 H 1.08000 * 120.00115 * 331.57578 * 16 15 14 18 18 C 1.38810 * 119.99667 * 151.58967 * 16 15 14 19 19 N 1.31621 * 119.99923 * 349.08283 * 18 16 15 20 20 Si 1.86803 * 119.99902 * 169.09325 * 18 16 15 21 21 H 1.48507 * 109.46565 * 269.99394 * 20 18 16 22 22 H 1.48494 * 109.47207 * 29.98829 * 20 18 16 23 23 H 1.48496 * 109.47158 * 149.99479 * 20 18 16 24 24 C 1.50167 * 118.92599 * 91.45382 * 15 14 13 25 25 C 1.46240 * 107.53191 * 289.83998 * 24 15 14 26 26 C 1.53041 * 109.52527 * 61.37050 * 9 8 7 27 27 C 1.46924 * 120.62936 * 359.97438 * 6 4 3 28 28 H 1.09003 * 109.46934 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47351 * 299.99733 * 1 2 3 30 30 H 1.08997 * 109.47055 * 60.00113 * 1 2 3 31 31 H 1.09001 * 109.46857 * 60.00321 * 3 2 1 32 32 H 1.08998 * 109.47544 * 299.99770 * 3 2 1 33 33 H 1.09000 * 109.58557 * 113.79930 * 7 6 4 34 34 H 1.08996 * 109.70129 * 353.44733 * 7 6 4 35 35 H 1.08996 * 109.50086 * 185.41533 * 8 7 6 36 36 H 1.08997 * 109.52476 * 65.33210 * 8 7 6 37 37 H 1.09005 * 109.45727 * 301.35942 * 9 8 7 38 38 H 1.09005 * 109.21062 * 337.06788 * 12 10 9 39 39 H 1.09003 * 109.20392 * 96.42281 * 12 10 9 40 40 H 1.08992 * 109.36271 * 81.33859 * 13 12 10 41 41 H 1.09004 * 109.36279 * 201.06653 * 13 12 10 42 42 H 1.09006 * 107.88634 * 196.93085 * 14 13 12 43 43 H 1.09004 * 108.10045 * 80.54535 * 14 13 12 44 44 H 0.96998 * 119.99492 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.84653 * 49.34760 * 24 15 14 46 46 H 1.08999 * 109.84533 * 170.33678 * 24 15 14 47 47 H 1.08998 * 108.52654 * 179.64945 * 25 24 15 48 48 H 1.08997 * 108.52384 * 297.32881 * 25 24 15 49 49 H 1.09000 * 109.49676 * 58.58115 * 26 9 8 50 50 H 1.09000 * 109.49787 * 178.68354 * 26 9 8 51 51 H 1.09000 * 109.58925 * 246.20250 * 27 6 4 52 52 H 1.08997 * 109.58920 * 6.49034 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9374 0.0006 5 8 4.4404 0.9622 0.0006 6 7 4.2574 3.1731 0.0013 7 6 5.7154 3.3548 0.0013 8 6 6.0983 4.2695 1.1690 9 6 5.3024 5.5732 1.0727 10 6 5.7075 6.5034 2.2179 11 1 5.4876 6.0366 3.1780 12 6 7.1677 6.8399 2.1262 13 6 7.8007 6.9322 3.5362 14 6 6.8161 7.6066 4.5160 15 7 6.0902 8.7370 4.0133 16 6 6.6142 9.9986 4.1085 17 1 7.2945 10.2416 4.9113 18 6 6.2707 10.9651 3.1733 19 7 5.6202 10.6227 2.0815 20 14 6.7318 12.7518 3.4641 21 1 5.6368 13.4318 4.2017 22 1 7.9816 12.8167 4.2634 23 1 6.9433 13.4273 2.1587 24 6 4.7493 8.5138 3.3752 25 6 4.9759 7.8365 2.0991 26 6 3.8060 5.2673 1.1693 27 6 3.3971 4.3641 0.0008 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8031 2.2371 0.8900 32 1 1.8031 2.2372 -0.8900 33 1 6.0267 3.8117 -0.9381 34 1 6.2061 2.3886 0.1179 35 1 7.1647 4.4902 1.1238 36 1 5.8693 3.7722 2.1115 37 1 5.5133 6.0578 0.1193 38 1 7.6788 6.0660 1.5535 39 1 7.2837 7.7974 1.6183 40 1 8.0373 5.9297 3.8924 41 1 8.7157 7.5223 3.4836 42 1 7.3815 7.9277 5.3908 43 1 6.0947 6.8568 4.8409 44 1 5.3805 11.2981 1.4278 45 1 4.1316 7.8896 4.0209 46 1 4.2571 9.4711 3.2038 47 1 4.0107 7.6606 1.6242 48 1 5.5617 8.4944 1.4571 49 1 3.5984 4.7602 2.1116 50 1 3.2407 6.1981 1.1242 51 1 3.5197 4.9031 -0.9386 52 1 2.3559 4.0629 0.1160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075444716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -29.238367 kcal Electronic energy + Delta-G solvation = -28964.674404 eV Core-core repulsion = 25283.197145 eV Total energy + Delta-G solvation = -3681.477258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38727 -40.10093 -38.16279 -35.82663 -34.03122 -33.10960 -32.31691 -31.89705 -30.66090 -29.53231 -28.10445 -26.60378 -25.15631 -24.40280 -23.73296 -21.88722 -21.34812 -20.17380 -20.02559 -18.54144 -18.30537 -17.57406 -16.89344 -16.76380 -16.42322 -16.09366 -15.62652 -15.50635 -15.19405 -14.92914 -14.87300 -14.77915 -14.56159 -14.51603 -14.16373 -13.92804 -13.71490 -13.43598 -13.37128 -13.16462 -13.06956 -13.01610 -12.81709 -12.67850 -12.46160 -12.17492 -12.07319 -11.90791 -11.82250 -11.65027 -11.48399 -11.09358 -11.00286 -10.95472 -10.93987 -10.80392 -10.51957 -10.34149 -9.68340 -8.70116 -8.50916 -7.76664 -5.25309 0.50826 1.47186 1.49355 1.49420 1.56175 1.64575 2.00610 2.55019 3.35644 3.38919 3.68765 3.79073 3.86891 3.92434 4.04325 4.16032 4.20728 4.27502 4.32819 4.39614 4.39814 4.40389 4.49075 4.49956 4.63420 4.70979 4.77902 4.81978 4.82262 4.91083 4.94417 4.99520 5.00322 5.05331 5.10276 5.17951 5.21594 5.30876 5.42725 5.47018 5.48830 5.53404 5.68252 5.70452 5.72974 5.82388 5.97076 6.31660 6.35241 6.51798 7.04493 7.25928 7.96910 8.48045 9.25537 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002349 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.858646 B =11917.421471 C =12374.506479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.271 6.271 3 C -0.109 4.109 4 C 0.524 3.476 5 O -0.571 6.571 6 N -0.602 5.602 7 C 0.115 3.885 8 C -0.120 4.120 9 C -0.070 4.070 10 C -0.062 4.062 11 H 0.059 0.941 12 C -0.094 4.094 13 C -0.138 4.138 14 C 0.155 3.845 15 N -0.602 5.602 16 C -0.260 4.260 17 H 0.054 0.946 18 C -0.039 4.039 19 N -0.913 5.913 20 Si 0.957 3.043 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.295 1.295 24 C 0.170 3.830 25 C -0.112 4.112 26 C -0.127 4.127 27 C 0.107 3.893 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.040 0.960 44 H 0.246 0.754 45 H 0.014 0.986 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 -16.417 -6.492 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.047 6.047 3 C -0.259 4.259 4 C 0.312 3.688 5 O -0.451 6.451 6 N -0.335 5.335 7 C -0.007 4.007 8 C -0.158 4.158 9 C -0.089 4.089 10 C -0.080 4.080 11 H 0.077 0.923 12 C -0.132 4.132 13 C -0.178 4.178 14 C 0.027 3.973 15 N -0.325 5.325 16 C -0.390 4.390 17 H 0.071 0.929 18 C -0.236 4.236 19 N -0.559 5.559 20 Si 0.787 3.213 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.221 1.221 24 C 0.047 3.953 25 C -0.151 4.151 26 C -0.165 4.165 27 C -0.015 4.015 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.103 0.897 51 H 0.103 0.897 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.622 -17.660 -6.599 21.166 hybrid contribution -0.117 2.496 0.202 2.507 sum -9.739 -15.163 -6.397 19.124 Atomic orbital electron populations 1.23548 0.91353 1.07689 1.06306 1.87831 1.09591 1.08986 1.98261 1.23523 0.95494 0.97645 1.09287 1.20194 0.90157 0.82728 0.75712 1.90716 1.63307 1.39593 1.51481 1.48156 1.07631 1.05635 1.72092 1.21598 0.79693 1.00320 0.99138 1.21929 1.00842 0.95052 0.97966 1.21050 0.95213 0.94261 0.98338 1.20427 0.94923 0.94918 0.97766 0.92293 1.21407 0.96100 0.99322 0.96342 1.22710 0.98575 0.99346 0.97194 1.20372 0.93471 0.89231 0.94185 1.44310 1.15974 1.01798 1.70392 1.19347 1.25002 0.88461 1.06237 0.92871 1.25627 1.01277 1.01519 0.95133 1.70067 1.44416 1.32081 1.09342 0.85431 0.77827 0.81702 0.76347 1.21536 1.20454 1.22143 1.20065 0.85344 0.97836 0.92058 1.20879 0.99442 0.95300 0.99443 1.21991 0.95904 1.00064 0.98529 1.22035 0.94932 0.84941 0.99584 0.87071 0.89135 0.88927 0.84926 0.84506 0.90367 0.90540 0.90129 0.92381 0.91630 0.92078 0.95379 0.91103 0.95024 0.96378 0.94203 0.94422 0.96781 0.92689 0.93686 0.91733 0.91804 0.89684 0.89723 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.76 113.37 1.22 0.11 16 2 S -0.27 -5.24 21.52 -56.49 -1.22 -6.46 16 3 C -0.11 -1.62 4.77 71.24 0.34 -1.28 16 4 C 0.52 11.89 7.72 87.66 0.68 12.57 16 5 O -0.57 -18.22 15.28 -3.02 -0.05 -18.27 16 6 N -0.60 -11.78 2.97 -818.82 -2.43 -14.21 16 7 C 0.11 2.45 6.43 86.36 0.56 3.00 16 8 C -0.12 -2.67 5.14 30.67 0.16 -2.51 16 9 C -0.07 -1.68 1.68 -10.77 -0.02 -1.70 16 10 C -0.06 -1.96 1.49 -11.88 -0.02 -1.97 16 11 H 0.06 1.92 6.28 -2.39 -0.02 1.90 16 12 C -0.09 -3.33 5.09 30.29 0.15 -3.17 16 13 C -0.14 -5.00 6.40 31.70 0.20 -4.80 16 14 C 0.16 6.40 5.13 87.43 0.45 6.85 16 15 N -0.60 -29.11 2.60 -708.84 -1.84 -30.96 16 16 C -0.26 -14.02 9.63 84.03 0.81 -13.21 16 17 H 0.05 2.91 7.85 -2.91 -0.02 2.89 16 18 C -0.04 -2.11 5.09 84.86 0.43 -1.68 16 19 N -0.91 -49.69 9.10 21.65 0.20 -49.49 16 20 Si 0.96 44.17 29.57 68.60 2.03 46.20 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 C 0.17 7.63 5.24 83.58 0.44 8.06 16 25 C -0.11 -4.36 4.46 28.36 0.13 -4.23 16 26 C -0.13 -2.45 5.17 30.69 0.16 -2.29 16 27 C 0.11 1.54 6.35 86.38 0.55 2.09 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.13 1.39 7.69 -2.39 -0.02 1.37 16 32 H 0.14 1.26 7.94 -2.39 -0.02 1.25 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.88 7.01 -2.39 -0.02 1.86 16 35 H 0.08 1.80 6.10 -2.39 -0.01 1.78 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.84 5.62 -2.38 -0.01 1.83 16 39 H 0.03 1.23 6.82 -2.39 -0.02 1.21 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.02 0.76 8.00 -2.38 -0.02 0.74 16 43 H 0.04 1.50 6.89 -2.39 -0.02 1.49 16 44 H 0.25 13.18 8.31 -92.71 -0.77 12.40 16 45 H 0.01 0.58 8.13 -2.39 -0.02 0.56 16 46 H 0.05 2.83 6.14 -2.39 -0.01 2.81 16 47 H 0.04 1.55 5.69 -2.39 -0.01 1.54 16 48 H 0.06 3.06 5.14 -2.39 -0.01 3.05 16 49 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.08 1.70 6.11 -2.39 -0.01 1.69 16 51 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.11 0.94 5.93 -2.39 -0.01 0.93 16 Total: -1.00 -67.07 389.97 3.81 -63.26 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.90 Total: 14.11 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 6.23 Total: -4.18 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.08 Total: -94.66 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -1.22 Total: -6.46 kcal Total: -67.07 3.81 -63.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075444716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.023 kcal (2) G-P(sol) polarization free energy of solvation -67.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds