Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81394 * 103.00153 * 2 1 4 4 C 1.50699 * 109.47198 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99813 * 0.02562 * 4 3 2 6 6 N 1.34768 * 120.00309 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.63494 * 179.97438 * 6 4 3 8 8 C 1.53183 * 108.78048 * 233.58873 * 7 6 4 9 9 C 1.53043 * 109.31060 * 305.36369 * 8 7 6 10 10 C 1.53007 * 109.46114 * 181.38239 * 9 8 7 11 11 H 1.09000 * 108.44916 * 292.61780 * 10 9 8 12 12 C 1.52569 * 108.51428 * 174.92405 * 10 9 8 13 13 C 1.50877 * 109.35487 * 153.88973 * 12 10 9 14 14 C 1.53975 * 110.10727 * 91.88119 * 13 12 10 15 15 N 1.47604 * 112.12700 * 319.45947 * 14 13 12 16 16 C 1.36937 * 118.64797 * 137.85669 * 15 14 13 17 17 H 1.07992 * 120.00393 * 209.13882 * 16 15 14 18 18 C 1.38818 * 119.99339 * 29.13379 * 16 15 14 19 19 N 1.31608 * 120.00601 * 11.22927 * 18 16 15 20 20 Si 1.86801 * 119.99515 * 191.22454 * 18 16 15 21 21 H 1.48504 * 109.47109 * 90.00026 * 20 18 16 22 22 H 1.48503 * 109.47322 * 210.00371 * 20 18 16 23 23 H 1.48503 * 109.47287 * 330.00404 * 20 18 16 24 24 C 1.44577 * 122.70984 * 317.83224 * 15 14 13 25 25 C 1.47098 * 108.38757 * 50.24136 * 10 9 8 26 26 C 1.53035 * 109.52675 * 61.37096 * 9 8 7 27 27 C 1.46925 * 120.63295 * 359.97438 * 6 4 3 28 28 H 1.08994 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46903 * 300.00036 * 1 2 3 30 30 H 1.09002 * 109.46935 * 59.99830 * 1 2 3 31 31 H 1.08998 * 109.47379 * 60.00271 * 3 2 1 32 32 H 1.08996 * 109.47226 * 300.00236 * 3 2 1 33 33 H 1.09000 * 109.58700 * 113.79398 * 7 6 4 34 34 H 1.09001 * 109.70417 * 353.44570 * 7 6 4 35 35 H 1.08997 * 109.50252 * 185.41172 * 8 7 6 36 36 H 1.09001 * 109.49911 * 65.31208 * 8 7 6 37 37 H 1.08998 * 109.46094 * 301.35668 * 9 8 7 38 38 H 1.08996 * 109.49224 * 273.85567 * 12 10 9 39 39 H 1.09004 * 109.48284 * 33.92612 * 12 10 9 40 40 H 1.08999 * 109.36794 * 212.08016 * 13 12 10 41 41 H 1.08996 * 109.36870 * 331.69602 * 13 12 10 42 42 H 1.08998 * 108.96755 * 198.76672 * 14 13 12 43 43 H 1.09009 * 108.87788 * 80.08683 * 14 13 12 44 44 H 0.97001 * 120.00501 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.45572 * 330.71061 * 24 15 14 46 46 H 1.08998 * 109.43070 * 210.76945 * 24 15 14 47 47 H 1.09003 * 109.32673 * 304.22919 * 25 10 9 48 48 H 1.08995 * 109.33406 * 63.70424 * 25 10 9 49 49 H 1.08998 * 109.49897 * 58.58058 * 26 9 8 50 50 H 1.09007 * 109.49978 * 178.67502 * 26 9 8 51 51 H 1.09001 * 109.59172 * 246.20173 * 27 6 4 52 52 H 1.09007 * 109.58144 * 6.48158 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7196 1.9373 -0.0006 5 8 4.4405 0.9619 -0.0015 6 7 4.2576 3.1729 -0.0002 7 6 5.7156 3.3545 -0.0003 8 6 6.0987 4.2693 1.1672 9 6 5.3029 5.5730 1.0708 10 6 5.7081 6.5034 2.2159 11 1 5.3718 6.0623 3.1542 12 6 4.9985 7.8409 2.0276 13 6 4.8390 8.5154 3.3677 14 6 6.0385 9.4414 3.6405 15 7 7.3157 8.8371 3.2133 16 6 8.2313 9.6249 2.5680 17 1 8.9128 9.1866 1.8541 18 6 8.2831 10.9868 2.8315 19 7 7.6153 11.4861 3.8497 20 14 9.3010 12.1109 1.7407 21 1 8.4600 12.6113 0.6237 22 1 9.7971 13.2600 2.5401 23 1 10.4552 11.3552 1.1911 24 6 7.6401 7.4480 3.4485 25 6 7.1760 6.5948 2.2423 26 6 3.8065 5.2673 1.1675 27 6 3.3975 4.3640 0.0003 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8033 2.2371 0.8900 32 1 1.8032 2.2371 -0.8899 33 1 6.0270 3.8112 -0.9398 34 1 6.2064 2.3883 0.1165 35 1 7.1651 4.4899 1.1219 36 1 5.8693 3.7719 2.1096 37 1 5.5136 6.0575 0.1174 38 1 5.5898 8.4767 1.3686 39 1 4.0163 7.6724 1.5859 40 1 3.9210 9.1030 3.3696 41 1 4.7824 7.7577 4.1492 42 1 6.0869 9.6532 4.7086 43 1 5.8917 10.3771 3.1008 44 1 7.6518 12.4377 4.0340 45 1 7.1350 7.1051 4.3514 46 1 8.7179 7.3435 3.5736 47 1 7.5983 5.5933 2.3250 48 1 7.5255 7.0557 1.3185 49 1 3.5989 4.7604 2.1099 50 1 3.2412 6.1982 1.1224 51 1 3.5194 4.9033 -0.9391 52 1 2.3563 4.0627 0.1162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075444717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -21.170740 kcal Electronic energy + Delta-G solvation = -28628.137343 eV Core-core repulsion = 24947.009924 eV Total energy + Delta-G solvation = -3681.127420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55245 -38.92812 -36.94128 -34.64882 -32.62565 -31.81778 -31.47361 -30.49346 -29.68392 -28.99364 -26.50028 -25.18028 -24.19142 -22.85213 -22.67399 -20.94939 -19.55931 -19.30589 -19.06651 -17.56969 -16.84832 -16.50680 -16.10556 -15.68201 -15.20631 -14.76204 -14.46247 -14.35080 -14.23180 -14.01958 -13.95304 -13.78887 -13.49252 -13.36464 -13.07003 -12.85607 -12.72679 -12.67283 -12.50882 -12.20505 -11.68343 -11.60519 -11.36975 -11.19638 -10.99257 -10.89244 -10.78707 -10.56120 -10.49237 -10.33078 -10.11623 -10.07166 -9.90512 -9.74601 -9.59930 -9.51900 -9.40740 -8.85559 -8.38050 -8.01829 -6.57023 -5.74389 -3.21446 1.08737 2.15423 2.29433 2.74241 3.37088 3.44274 3.45221 4.07206 4.49998 4.51396 4.54760 4.70423 4.71456 4.73133 4.73875 4.79271 4.94411 5.12392 5.17589 5.28366 5.28891 5.38363 5.42531 5.55250 5.59234 5.63637 5.70306 5.74578 5.86114 5.93222 5.99537 6.11059 6.15000 6.22834 6.30756 6.37014 6.43003 6.57292 6.65583 6.77036 6.77734 6.85845 6.96377 7.03194 7.07499 7.20148 7.50442 7.76824 7.84236 7.85558 8.52889 9.29270 9.95890 10.42072 11.32447 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027240 B = 0.002163 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.662322 B =12939.721960 C =13315.715877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.187 6.187 3 C -0.126 4.126 4 C 0.531 3.469 5 O -0.523 6.523 6 N -0.605 5.605 7 C 0.112 3.888 8 C -0.132 4.132 9 C -0.086 4.086 10 C -0.061 4.061 11 H 0.053 0.947 12 C -0.101 4.101 13 C -0.142 4.142 14 C 0.180 3.820 15 N -0.589 5.589 16 C -0.254 4.254 17 H 0.063 0.937 18 C 0.004 3.996 19 N -0.907 5.907 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.159 3.841 25 C -0.144 4.144 26 C -0.132 4.132 27 C 0.105 3.895 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.021 0.979 43 H 0.072 0.928 44 H 0.252 0.748 45 H 0.029 0.971 46 H 0.042 0.958 47 H 0.051 0.949 48 H 0.059 0.941 49 H 0.065 0.935 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.805 -16.971 -7.734 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.037 5.963 3 C -0.277 4.277 4 C 0.317 3.683 5 O -0.399 6.399 6 N -0.339 5.339 7 C -0.010 4.010 8 C -0.170 4.170 9 C -0.105 4.105 10 C -0.080 4.080 11 H 0.071 0.929 12 C -0.138 4.138 13 C -0.181 4.181 14 C 0.055 3.945 15 N -0.311 5.311 16 C -0.384 4.384 17 H 0.081 0.919 18 C -0.195 4.195 19 N -0.551 5.551 20 Si 0.731 3.269 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.031 3.969 25 C -0.185 4.185 26 C -0.170 4.170 27 C -0.018 4.018 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.101 0.899 51 H 0.091 0.909 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.758 -18.188 -7.647 24.053 hybrid contribution -0.528 1.960 -0.523 2.097 sum -14.286 -16.227 -8.171 23.112 Atomic orbital electron populations 1.23540 0.95809 1.06787 1.04910 1.87558 1.04598 1.06134 1.98003 1.23567 0.98008 0.99208 1.06944 1.19614 0.88815 0.83170 0.76700 1.90743 1.61927 1.38053 1.49215 1.48062 1.07698 1.05167 1.73005 1.21707 0.78918 1.01319 0.99034 1.22126 1.01344 0.95478 0.98037 1.21326 0.93421 0.95251 1.00465 1.19964 0.96663 0.94870 0.96492 0.92854 1.21052 0.98400 0.95939 0.98434 1.22048 1.00033 0.99600 0.96438 1.20983 0.81722 0.93954 0.97834 1.43601 1.14608 1.05059 1.67798 1.19194 1.12865 0.89851 1.16499 0.91948 1.25114 0.99278 0.98254 0.96833 1.70034 1.45257 1.12196 1.27635 0.86319 0.80056 0.80604 0.79934 1.21560 1.21803 1.20491 1.20660 0.97453 0.85459 0.93371 1.21659 0.94926 0.99395 1.02476 1.22074 0.97649 0.99497 0.97769 1.21854 0.93825 0.86186 0.99926 0.87725 0.90436 0.90498 0.87171 0.87291 0.91386 0.89076 0.89571 0.91662 0.91159 0.90953 0.93732 0.93388 0.93933 0.96087 0.90999 0.93767 0.95307 0.93943 0.93052 0.92248 0.91600 0.89917 0.90939 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 10.76 101.05 1.09 0.32 16 2 S -0.19 -1.82 21.52 -107.50 -2.31 -4.14 16 3 C -0.13 -1.02 4.77 36.01 0.17 -0.85 16 4 C 0.53 6.09 7.72 -10.99 -0.08 6.01 16 5 O -0.52 -8.08 15.28 5.55 0.08 -7.99 16 6 N -0.60 -6.09 2.97 -172.79 -0.51 -6.60 16 7 C 0.11 1.19 6.43 -3.71 -0.02 1.17 16 8 C -0.13 -1.44 4.70 -26.61 -0.13 -1.57 16 9 C -0.09 -0.98 1.70 -90.58 -0.15 -1.13 16 10 C -0.06 -0.88 1.33 -93.67 -0.12 -1.01 16 11 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 12 C -0.10 -1.61 4.84 -28.02 -0.14 -1.75 16 13 C -0.14 -2.56 5.71 -27.29 -0.16 -2.72 16 14 C 0.18 4.20 4.64 -2.93 -0.01 4.18 16 15 N -0.59 -14.14 2.27 -172.07 -0.39 -14.53 16 16 C -0.25 -6.77 9.43 -15.06 -0.14 -6.91 16 17 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 18 C 0.00 0.10 4.97 -17.43 -0.09 0.01 16 19 N -0.91 -25.99 10.92 55.49 0.61 -25.38 16 20 Si 0.90 21.52 29.57 -169.99 -5.03 16.49 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.16 3.22 5.66 -4.08 -0.02 3.19 16 25 C -0.14 -2.36 4.49 -28.58 -0.13 -2.49 16 26 C -0.13 -1.23 5.16 -26.63 -0.14 -1.36 16 27 C 0.11 0.81 6.34 -3.73 -0.02 0.79 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.11 0.70 7.69 -51.93 -0.40 0.30 16 32 H 0.11 0.65 7.94 -51.93 -0.41 0.23 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 35 H 0.09 0.96 6.08 -51.93 -0.32 0.65 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.39 7.48 -51.93 -0.39 1.00 16 39 H 0.04 0.60 5.74 -51.93 -0.30 0.30 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.74 7.32 -51.93 -0.38 0.36 16 42 H 0.02 0.54 8.00 -51.93 -0.42 0.12 16 43 H 0.07 1.88 6.40 -51.92 -0.33 1.55 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 46 H 0.04 0.89 7.99 -51.93 -0.41 0.47 16 47 H 0.05 0.74 5.76 -51.93 -0.30 0.44 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.75 6.11 -51.93 -0.32 0.43 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -31.25 394.93 -10.92 -42.17 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -9.22 Total: -1.84 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.10 Total: -4.13 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.30 Total: -46.51 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.08 Total: -7.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.31 Total: -4.14 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.25 -10.92 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075444717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.002 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds