Wall clock time and date at job start Sat Apr 11 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50698 * 120.00176 * 2 1 4 4 C 1.33122 * 120.00259 * 179.97438 * 2 1 3 5 5 F 1.35102 * 119.99476 * 5.11028 * 4 2 1 6 6 C 1.47294 * 120.00014 * 184.83323 * 4 2 1 7 7 O 1.21609 * 120.00177 * 90.12776 * 6 4 2 8 8 N 1.34774 * 120.00117 * 270.12005 * 6 4 2 9 9 C 1.47154 * 120.98751 * 4.44979 * 8 6 4 10 10 C 1.53302 * 108.37342 * 230.60332 * 9 8 6 11 11 H 1.08999 * 109.50816 * 67.61873 * 10 9 8 12 12 C 1.52993 * 109.51554 * 187.72140 * 10 9 8 13 13 O 1.42970 * 109.22898 * 307.64775 * 10 9 8 14 14 C 1.42899 * 114.21175 * 62.48710 * 13 10 9 15 15 C 1.52994 * 109.54587 * 177.79395 * 14 13 10 16 16 C 1.53187 * 109.35376 * 300.93377 * 15 14 13 17 17 N 1.46931 * 108.76814 * 305.41796 * 16 15 14 18 18 C 1.36941 * 120.63892 * 233.70261 * 17 16 15 19 19 H 1.08003 * 119.99944 * 31.82008 * 18 17 16 20 20 C 1.38811 * 119.99797 * 211.81724 * 18 17 16 21 21 N 1.31617 * 120.00265 * 11.02776 * 20 18 17 22 22 Si 1.86799 * 119.99843 * 191.02543 * 20 18 17 23 23 H 1.48501 * 109.47397 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47370 * 120.00229 * 22 20 18 25 25 H 1.48504 * 109.46999 * 240.00148 * 22 20 18 26 26 C 1.46923 * 118.71584 * 53.67767 * 17 16 15 27 27 C 1.52981 * 109.57012 * 57.48656 * 14 13 10 28 28 C 1.47155 * 120.98949 * 184.17434 * 8 6 4 29 29 H 1.09005 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47510 * 300.00086 * 1 2 3 31 31 H 1.09000 * 109.46828 * 60.00202 * 1 2 3 32 32 H 1.09003 * 109.47259 * 274.26756 * 3 2 1 33 33 H 1.09009 * 109.47003 * 34.26342 * 3 2 1 34 34 H 1.08999 * 109.47377 * 154.26173 * 3 2 1 35 35 H 1.09005 * 109.68781 * 350.32161 * 9 8 6 36 36 H 1.09000 * 109.68669 * 110.84992 * 9 8 6 37 37 H 1.09001 * 109.47451 * 60.00031 * 12 10 9 38 38 H 1.08995 * 109.47574 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.47282 * 300.00380 * 12 10 9 40 40 H 1.09000 * 109.49259 * 60.90104 * 15 14 13 41 41 H 1.09004 * 109.48824 * 180.97084 * 15 14 13 42 42 H 1.08995 * 109.59105 * 185.62586 * 16 15 14 43 43 H 1.09007 * 109.70483 * 65.27033 * 16 15 14 44 44 H 0.97002 * 120.00180 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58318 * 186.53529 * 26 17 16 46 46 H 1.08999 * 109.58071 * 66.12683 * 26 17 16 47 47 H 1.08998 * 109.49011 * 179.03413 * 27 14 13 48 48 H 1.09002 * 109.49031 * 299.07833 * 27 14 13 49 49 H 1.08999 * 109.67081 * 249.24580 * 28 8 6 50 50 H 1.08994 * 109.67696 * 9.78162 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1528 0.0005 5 9 1.5011 -2.3205 -0.1032 6 6 3.6416 -1.1550 0.1080 7 8 4.1712 -1.2021 1.2017 8 7 4.3989 -1.1049 -1.0058 9 6 3.7840 -0.9498 -2.3337 10 6 4.3487 -2.0351 -3.2574 11 1 3.9999 -3.0130 -2.9258 12 6 3.8764 -1.7829 -4.6906 13 8 5.7772 -1.9958 -3.2116 14 6 6.3301 -2.2741 -1.9236 15 6 7.8576 -2.2583 -2.0080 16 6 8.3209 -3.3087 -3.0222 17 7 7.7500 -4.6102 -2.6490 18 6 8.5565 -5.7045 -2.4838 19 1 9.5657 -5.5814 -2.1195 20 6 8.0768 -6.9719 -2.7845 21 7 6.9367 -7.1086 -3.4277 22 14 9.0494 -8.4835 -2.2762 23 1 10.2864 -8.0622 -1.5708 24 1 8.2242 -9.3214 -1.3695 25 1 9.4107 -9.2688 -3.4838 26 6 6.2972 -4.7145 -2.4561 27 6 5.8557 -3.6486 -1.4484 28 6 5.8655 -1.1976 -0.9296 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.3759 1.6580 -1.0248 33 1 1.7066 2.0444 0.5786 34 1 3.2438 1.1569 0.4463 35 1 2.7027 -1.0625 -2.2531 36 1 4.0215 0.0352 -2.7355 37 1 4.2271 -0.8056 -5.0222 38 1 4.2787 -2.5546 -5.3469 39 1 2.7872 -1.8086 -4.7240 40 1 8.1941 -1.2717 -2.3268 41 1 8.2783 -2.4876 -1.0289 42 1 9.4090 -3.3708 -3.0129 43 1 7.9792 -3.0323 -4.0197 44 1 6.6017 -7.9942 -3.6382 45 1 6.0498 -5.7045 -2.0730 46 1 5.7898 -4.5512 -3.4068 47 1 6.2918 -3.8669 -0.4736 48 1 4.7685 -3.6508 -1.3691 49 1 6.3080 -0.2365 -1.1914 50 1 6.1636 -1.4763 0.0811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098583872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:24 Heat of formation + Delta-G solvation = -83.379140 kcal Electronic energy + Delta-G solvation = -32478.523698 eV Core-core repulsion = 28228.485543 eV Total energy + Delta-G solvation = -4250.038155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.08787 -40.77548 -38.96228 -36.41458 -35.78661 -34.65258 -33.55143 -31.50180 -30.20243 -29.82741 -28.71927 -27.93422 -26.98618 -26.07231 -24.14432 -22.63079 -21.78477 -21.63076 -20.16513 -18.97745 -18.87641 -17.79467 -16.96851 -16.81104 -16.38197 -15.68028 -15.42926 -15.20569 -14.94331 -14.69085 -14.55821 -14.25088 -14.07153 -13.59021 -13.46933 -13.26968 -13.23422 -13.21313 -12.96110 -12.76424 -12.62817 -12.38135 -12.33192 -12.02645 -11.97305 -11.80051 -11.52163 -11.44059 -11.42448 -10.99140 -10.76574 -10.58771 -10.36657 -10.24267 -10.23457 -9.97446 -9.83982 -9.53189 -9.32147 -9.06070 -8.48360 -8.42891 -6.55253 -5.74525 -3.22007 1.19711 2.15340 2.66198 3.39030 3.46585 3.48622 3.85083 3.86944 4.27588 4.48537 4.52256 4.64563 4.83477 4.95246 5.03645 5.09267 5.10550 5.21763 5.25632 5.30134 5.31188 5.42513 5.45769 5.48898 5.50946 5.56814 5.61127 5.61422 5.76769 5.81110 5.87808 6.01315 6.07576 6.12070 6.17463 6.22700 6.33035 6.42913 6.44459 6.56326 6.68525 6.84255 7.06038 7.10615 7.42275 7.57066 7.73716 7.78450 7.82993 8.52200 9.26955 9.88833 10.48259 11.33673 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003363 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.330234 B = 8322.784829 C = 8583.188513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 C -0.117 4.117 4 C 0.010 3.990 5 F -0.124 7.124 6 C 0.553 3.447 7 O -0.517 6.517 8 N -0.595 5.595 9 C 0.079 3.921 10 C 0.071 3.929 11 H 0.071 0.929 12 C -0.141 4.141 13 O -0.354 6.354 14 C 0.119 3.881 15 C -0.117 4.117 16 C 0.151 3.849 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.183 3.817 27 C -0.162 4.162 28 C 0.088 3.912 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.252 0.748 45 H 0.084 0.916 46 H 0.022 0.978 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 18.277 2.095 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.126 4.126 3 C -0.174 4.174 4 C -0.012 4.012 5 F -0.103 7.103 6 C 0.339 3.661 7 O -0.393 6.393 8 N -0.328 5.328 9 C -0.044 4.044 10 C 0.012 3.988 11 H 0.089 0.911 12 C -0.198 4.198 13 O -0.273 6.273 14 C 0.079 3.921 15 C -0.157 4.157 16 C 0.025 3.975 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.057 3.943 27 C -0.202 4.202 28 C -0.034 4.034 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.040 0.960 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.093 0.907 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.841 18.074 2.470 21.748 hybrid contribution -0.018 -1.124 0.482 1.223 sum -11.859 16.950 2.952 20.896 Atomic orbital electron populations 1.20806 0.89983 1.03847 1.02993 1.22413 0.97345 0.93751 0.99071 1.20794 1.00000 0.93531 1.03070 1.19229 0.89951 0.82251 1.09798 1.91523 1.78977 1.46243 1.93518 1.18320 0.86090 0.77179 0.84547 1.90852 1.73194 1.48975 1.26279 1.48157 1.07616 1.70903 1.06103 1.22600 0.98499 1.00787 0.82552 1.22385 0.83128 0.97552 0.95750 0.91072 1.21690 1.00531 1.03144 0.94452 1.88015 1.17985 1.90991 1.30305 1.21822 0.94896 0.93101 0.82260 1.22000 0.91092 1.00367 1.02210 1.20795 0.96501 0.85850 0.94356 1.43992 1.02829 1.04904 1.79672 1.19218 0.96791 0.85054 1.37045 0.91820 1.25168 0.97754 0.98323 0.98230 1.69990 1.21159 1.21781 1.41882 0.86219 0.79502 0.83226 0.77804 1.20239 1.21646 1.21679 1.20621 0.83820 0.96093 0.93783 1.22740 0.99185 0.96224 1.02046 1.22693 0.77892 1.00172 1.02670 0.90961 0.90399 0.90410 0.90187 0.90382 0.91251 0.89419 0.90180 0.91913 0.90831 0.91316 0.92183 0.90821 0.92885 0.95456 0.93752 0.89776 0.95981 0.91772 0.93343 0.90703 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.10 36.00 0.36 -0.49 16 2 C -0.12 -1.18 6.05 -101.13 -0.61 -1.79 16 3 C -0.12 -0.92 9.73 36.00 0.35 -0.57 16 4 C 0.01 0.13 5.15 -37.68 -0.19 -0.07 16 5 F -0.12 -1.73 16.08 2.25 0.04 -1.69 16 6 C 0.55 8.30 5.53 -12.58 -0.07 8.24 16 7 O -0.52 -9.44 16.59 5.27 0.09 -9.35 16 8 N -0.60 -8.21 2.51 -173.33 -0.44 -8.64 16 9 C 0.08 0.90 5.84 -3.53 -0.02 0.88 16 10 C 0.07 0.98 3.01 -26.58 -0.08 0.90 16 11 H 0.07 1.14 6.29 -51.93 -0.33 0.82 16 12 C -0.14 -1.58 9.57 37.15 0.36 -1.23 16 13 O -0.35 -5.96 8.65 -35.23 -0.30 -6.27 16 14 C 0.12 2.03 0.68 -90.26 -0.06 1.97 16 15 C -0.12 -2.03 5.10 -26.64 -0.14 -2.16 16 16 C 0.15 3.22 6.28 -3.71 -0.02 3.19 16 17 N -0.59 -14.98 2.98 -172.33 -0.51 -15.49 16 18 C -0.25 -6.96 9.57 -15.06 -0.14 -7.10 16 19 H 0.06 1.73 7.85 -52.48 -0.41 1.32 16 20 C 0.00 0.11 5.04 -17.43 -0.09 0.02 16 21 N -0.90 -26.49 11.11 55.49 0.62 -25.87 16 22 Si 0.90 21.98 29.57 -169.99 -5.03 16.95 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.18 4.45 5.02 -3.72 -0.02 4.43 16 27 C -0.16 -3.25 4.34 -26.65 -0.12 -3.37 16 28 C 0.09 1.29 5.32 -3.31 -0.02 1.27 16 29 H 0.07 0.58 7.04 -51.93 -0.37 0.21 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.07 0.69 6.70 -51.93 -0.35 0.34 16 35 H 0.09 0.88 6.36 -51.93 -0.33 0.55 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.03 0.61 7.83 -51.93 -0.41 0.20 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.08 2.33 6.15 -51.93 -0.32 2.01 16 46 H 0.02 0.57 7.83 -51.93 -0.41 0.16 16 47 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.05 0.94 6.16 -51.93 -0.32 0.62 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.10 1.59 7.11 -51.93 -0.37 1.22 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -32.38 388.41 -8.42 -40.80 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.22 Total: -0.39 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.51 Total: 4.11 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.33 Total: -50.01 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.22 Total: -15.62 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.38 -8.42 -40.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098583872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.580 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds